RLG00000027970

Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0004269
Physical Location & Seq
Reverse (-)
17340989 .. 17342442
1454 bp
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UTR
Exon/CDS
Intron
RLM00000027970

Sequence Viewer

Length: 375 bp
ATGGAGATGAGCTGCCAGTCGAATGGCAATTCTACTGACATTCAACAGCTCTGTAACTCTGGGGGGACCTCATACCAGGACAAGACTTACTCAGGCTATATGCCTCCTCCTCCTTTTGTTGATTTAGACCTGGGTAACTACGAGCGGTTCGTAGATGTGACTCTTACTAGGGACAACAATGTTACGACGGGCAAGATATATCAGTCTGTCTATGACAAGGAGCGGAGCGGAGATTATCTTGGAAAGAATGTGCAGGCTCTGGAACTTAGCAATGAGGAACAAAGGAAAATACTACATGAGAACAATGGGAACCCTGTCCCAGCAAAGGTCGCCAAAGTAAAGGCCCTATGTAAAGAACTCAATCTTCAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
CTP_synth_N GATase

Protein Analysis

125

Amino Acids

13.92

Weight (kDa)

5.1

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_synth_N PF06418 40 - 97 7.5e-20 CTP synthase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 145, 223, 228
AciI CCGC 3 cut(s) 145, 223, 228
AcuI CTGAAG 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 1 cut(s) 44
AjnI CCWGG 2 cut(s) 75, 129
AluBI AGCT 2 cut(s) 12, 49
AluI AGCT 2 cut(s) 12, 49
AlwNI CAGNNNCTG 1 cut(s) 259
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 66, 343
AvaII GGWCC 1 cut(s) 66
BciT130I CCWGG 2 cut(s) 77, 131
BfaI CTAG 1 cut(s) 168
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 2 cut(s) 77, 131
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 66, 343
BmiI GGNNCC 2 cut(s) 67, 311
BmrFI CCNGG 2 cut(s) 77, 131
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 2 cut(s) 77, 131
BseDI CCNNGG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 2 cut(s) 96, 99
BseYI CCCAGC 1 cut(s) 319
BsgI GTGCAG 1 cut(s) 272
BshFI GGCC 1 cut(s) 344
BslFI GGGAC 3 cut(s) 79, 185, 302
BslI CCNNNNNNNGG 1 cut(s) 325
BsmFI GGGAC 3 cut(s) 79, 185, 302
BsnI GGCC 1 cut(s) 344
BspACI CCGC 3 cut(s) 145, 223, 228
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 104
BspLI GGNNCC 2 cut(s) 67, 311
BsrBI CCGCTC 3 cut(s) 145, 223, 228
BsrDI GCAATG 1 cut(s) 277
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 130
Bst2UI CCWGG 2 cut(s) 77, 131
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 2 cut(s) 91, 266
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 2 cut(s) 77, 131
BstSCI CCNGG 2 cut(s) 75, 129
BstXI CCANNNNNNTGG 1 cut(s) 23
BsuRI GGCC 1 cut(s) 344
Cac8I GCNNGC 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 66, 343
CviAII CATG 1 cut(s) 296
CviJI RGCY 5 cut(s) 12, 49, 96, 257, 344
CviKI_1 RGCY 5 cut(s) 12, 49, 96, 257, 344
DdeI CTNAG 2 cut(s) 91, 266
Eco47I GGWCC 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 350
EcoO109I RGGNCCY 2 cut(s) 66, 343
EcoRII CCWGG 2 cut(s) 75, 129
FaeI CATG 1 cut(s) 299
FaiI YATR 7 cut(s) 73, 99, 101, 199, 213, 297, 349
FaqI GGGAC 3 cut(s) 79, 185, 302
FatI CATG 1 cut(s) 295
Fnu4HI GCNGC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 1 cut(s) 168
GluI GCNGC 1 cut(s) 13
GsaI CCCAGC 1 cut(s) 323
HaeIII GGCC 1 cut(s) 344
Hin1II CATG 1 cut(s) 299
HinfI GANTC 1 cut(s) 160
Hpy188III TCNNGA 1 cut(s) 260
Hpy99I CGWCG 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 2 cut(s) 91, 266
Hsp92II CATG 1 cut(s) 299
LmnI GCTCC 2 cut(s) 220, 225
MaeI CTAG 1 cut(s) 168
MaeIII GTNAC 4 cut(s) 53, 134, 157, 181
MbiI CCGCTC 3 cut(s) 145, 223, 228
MboII GAAGA 1 cut(s) 356
MluCI AATT 1 cut(s) 28
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 5 cut(s) 79, 114, 117, 120, 268
MspR9I CCNGG 2 cut(s) 77, 131
MvaI CCWGG 2 cut(s) 77, 131
MwoI GCNNNNNNNGC 1 cut(s) 329
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 2 cut(s) 67, 311
NmuCI GTSAC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 75, 129
PspFI CCCAGC 1 cut(s) 319
PspGI CCWGG 2 cut(s) 75, 129
PspN4I GGNNCC 2 cut(s) 67, 311
PspPI GGNCC 2 cut(s) 66, 343
PspPPI RGGWCCY 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 259
SatI GCNGC 1 cut(s) 13
Sau96I GGNCC 2 cut(s) 66, 343
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 2 cut(s) 77, 131
SetI ASST 5 cut(s) 14, 51, 71, 132, 330
SinI GGWCC 1 cut(s) 66
Sse9I AATT 1 cut(s) 28
SsiI CCGC 3 cut(s) 145, 223, 228
SspMI CTAG 1 cut(s) 168
StyD4I CCNGG 2 cut(s) 75, 129
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 28
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 66
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.