Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006175

Physical Location & Seq

Genomic Coordinates Forward (+)

976246 .. 979163

Gene Structure 2918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGAGTAGCTTCAACGGAGACTCCATGGATGATTTCAAAGGCCTCCGAATAACTCAGCTTGATGATGATGACGATGATGAAACTGCGGTGGAACCTATAAATATGGATGAATTTGATGATGATGATGAGGAAGATGATGAAGATTATGAACCTGTGATGTTAGGTTTCGTTGAGAGTCCTAAATTCGCATGGTCAAATCTTCGTCAACTGTTCCCTAATTTAGCTGGTGGTGTTCCGGCATGGTTGGATCCAGTTAATTTACCATCAGGGAAGTCAATTCTATGTGATCTATGTGAAGAACCTATGCAATTTGTACTTCAACTTTATGCTCCTTTAACAGACAAGGAATCAGCTTTTCATCGGACATTGTTTCTCTTCATGTGTCCATCTATGTCTTGTCTCCTTCGTGATCAACATGAACAATGGAAACGTGCCCCAGAGAAGGCTATGCGGAGTACGAAGGTTTTCCGTTGCCAATTGCCTCGAGCTAATCCTTTTTACTCGAGTGAGGCTCCAAAGCACGATGGAACAGACAAGCCATTGGGTCATGGAGCTCCGCTTTGCACTTGGTGTGGAACATGGAAAGGAGATAAACTATGTAGCGGCTGCAAAAATGCTCGATACTGTTCACCGAAACACCAGGCCCTGCATTGGCGCTTGGGTCATAAAACCGAATGCCAACAGCTTCGAACGGTTAGCGAAACATCTGACTCAGGCCCTGTCAATAATGGGGTTGCTCCAACTGAAAAGCAGAAAGTTGCGAGTAAGAGTTTATGGAAAGAATTTGTATTGATCAATGAGGATGAAAGTGAGTATGATACTGAGATGTCAGGAGATGATGAAGTAGCTAAACCTTTGGTCTCAAAGAGAGAAGTTGACGACCAAATGAAATCGCTAATGAACGATTTTGAGGGAGATGCTGATAAAAAGAATTGGGTTAATTTCCAGCAACGCGTAGACAAAGCCCCTGAACAAGTTCTGAGATATTCCCGGAGCTCTGGTGCTAAACCCCTTTGGCCAATAGCAAGCGGACGAGTCTCTAAATCTGAGCTTCCCAGTTGCAAATCTTGTGGTGGTCCTCGTTGTTTTGAATTTCAGGTGATGCCGCAGCTACTGTTCTTCTTCGGTGGGAAGAACGAGAGGGAATCTCTCGATTGGGCAACAATCGTGGTGTACACTTGTGAGAACTCGTGTGACTCGAGCTTAAGTTACAAGGAAGAGTTTGTCTGGGTTCAACTATACAGTCAGACAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD2_C zf-MYND

Protein Analysis

418

Amino Acids

47.49

Weight (kDa)

4.78

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	188 - 226	2.2e-09	MYND finger
PDCD2_C	PF04194	310 - 412	1.7e-33	Programmed cell death protein 2, C-terminal putative domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02220
fragaria_vesca	FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570
malus_domestica	MD05G1235200.v1.1 MD10G1211200.v1.1
prunus_persica	Prupe.4G131100_v2.0.a1
pyrus_communis	pycom05g21210
rosa_chinensis	RchiOBHm_Chr5g0024021
rosa_laevigata	RLG00000032755
rosa_multiflora	Rmu_sc0005837.1_g000013 Rmu_sc0011761.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055220
rosa_rugosa	Rorug05G0080800 Rorug05G0080900 Rorug05G0081000
rosa_samantha	Rh5AG171300 Rh5BG168000 Rh5CG183500 Rh5DG170000
rosa_wichuraiana	Rw5G015500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	957
AccII	CGCG	1 cut(s)	954
AciI	CCGC	6 cut(s)	86, 451, 557, 603, 1029, 1106
AclWI	GGATC	2 cut(s)	242, 255
AcoI	YGGCCR	1 cut(s)	1016
AcsI	RAATTY	4 cut(s)	110, 182, 782, 1091
AdeI	CACNNNGTG	1 cut(s)	570
AfaI	GTAC	3 cut(s)	315, 457, 1175
AfiI	CCNNNNNNNGG	2 cut(s)	442, 651
AflII	CTTAAG	1 cut(s)	1204
AflIII	ACRYGT	1 cut(s)	952
AgsI	TTSAA	5 cut(s)	13, 37, 320, 1091, 1235
AjnI	CCWGG	1 cut(s)	639
Alw21I	GWGCWC	2 cut(s)	556, 998
Alw26I	GTCTC	4 cut(s)	12, 404, 865, 1042
AlwI	GGATC	2 cut(s)	242, 255
AlwNI	CAGNNNCTG	3 cut(s)	646, 719, 1114
Ama87I	CYCGRG	3 cut(s)	483, 502, 1198
AoxI	GGCC	4 cut(s)	40, 642, 715, 1016
ApeKI	GCWGC	2 cut(s)	606, 1108
ApoI	RAATTY	4 cut(s)	110, 182, 782, 1091
Asp700I	GAANNNNTTC	2 cut(s)	464, 975
AspLEI	GCGC	1 cut(s)	657
AspS9I	GGNCC	3 cut(s)	643, 716, 1076
AsuC2I	CCSGG	1 cut(s)	991
AsuHPI	GGTGA	2 cut(s)	621, 1111
AsuII	TTCGAA	1 cut(s)	688
AvaI	CYCGRG	3 cut(s)	483, 502, 1198
AvaII	GGWCC	1 cut(s)	1076
BaeGI	GKGCMC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	1018
BamHI	GGATCC	1 cut(s)	247
BanII	GRGCYC	2 cut(s)	556, 998
BauI	CACGAG	1 cut(s)	1189
Bbv12I	GWGCWC	2 cut(s)	556, 998
BbvI	GCAGC	2 cut(s)	593, 1120
BccI	CCATC	3 cut(s)	271, 394, 518
BciT130I	CCWGG	1 cut(s)	641
BclI	TGATCA	2 cut(s)	409, 792
BcnI	CCSGG	1 cut(s)	991
BcoDI	GTCTC	4 cut(s)	12, 404, 865, 1042
BfoI	RGCGCY	1 cut(s)	658
BfrI	CTTAAG	1 cut(s)	1204
BisI	GCNGC	4 cut(s)	604, 607, 1106, 1109
BlsI	GCNGC	4 cut(s)	605, 608, 1107, 1110
Bme1390I	CCNGG	2 cut(s)	641, 991
Bme18I	GGWCC	1 cut(s)	1076
BmeT110I	CYCGRG	3 cut(s)	483, 502, 1198
BmgT120I	GGNCC	3 cut(s)	643, 716, 1076
BmiI	GGNNCC	3 cut(s)	93, 249, 513
BmrFI	CCNGG	2 cut(s)	641, 991
BmrI	ACTGGG	1 cut(s)	1050
BmsI	GCATC	2 cut(s)	907, 1092
BmuI	ACTGGG	1 cut(s)	1050
BplI	GAGNNNNNCTC	4 cut(s)	496, 528, 1132, 1164
Bpu14I	TTCGAA	1 cut(s)	688
BpuMI	CCSGG	1 cut(s)	991
BsaI	GGTCTC	1 cut(s)	865
BsaJI	CCNNGG	1 cut(s)	24
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 985, 1015
Bsc4I	CCNNNNNNNGG	2 cut(s)	442, 651
Bse1I	ACTGG	2 cut(s)	251, 1056
BseBI	CCWGG	1 cut(s)	641
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	3 cut(s)	34, 112, 808
BseLI	CCNNNNNNNGG	2 cut(s)	442, 651
BseMII	CTCAG	5 cut(s)	68, 726, 813, 971, 1038
BseNI	ACTGG	2 cut(s)	251, 1056
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	593, 1120
Bsh1236I	CGCG	1 cut(s)	954
BshFI	GGCC	4 cut(s)	42, 644, 717, 1018
BsiHKAI	GWGCWC	2 cut(s)	556, 998
BsiHKCI	CYCGRG	3 cut(s)	483, 502, 1198
BsiSI	CCGG	2 cut(s)	236, 991
BslI	CCNNNNNNNGG	2 cut(s)	442, 651
BsmAI	GTCTC	4 cut(s)	12, 404, 865, 1042
BsmI	GAATGC	1 cut(s)	680
BsnI	GGCC	4 cut(s)	42, 644, 717, 1018
Bso31I	GGTCTC	1 cut(s)	865
BsoBI	CYCGRG	3 cut(s)	483, 502, 1198
Bsp119I	TTCGAA	1 cut(s)	688
Bsp1286I	GDGCHC	3 cut(s)	436, 556, 998
Bsp1407I	TGTACA	1 cut(s)	1173
Bsp143I	GATC	4 cut(s)	247, 286, 409, 792
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	6 cut(s)	86, 451, 557, 603, 1029, 1106
BspANI	GGCC	4 cut(s)	42, 644, 717, 1018
BspCNI	CTCAG	5 cut(s)	67, 725, 814, 972, 1039
BspFNI	CGCG	1 cut(s)	954
BspLI	GGNNCC	3 cut(s)	93, 249, 513
BspPI	GGATC	2 cut(s)	242, 255
BspT104I	TTCGAA	1 cut(s)	688
BspTI	CTTAAG	1 cut(s)	1204
BspTNI	GGTCTC	1 cut(s)	865
BsrGI	TGTACA	1 cut(s)	1173
BsrI	ACTGG	2 cut(s)	251, 1056
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	4 cut(s)	247, 286, 409, 792
BssSI	CACGAG	1 cut(s)	1189
BssT1I	CCWWGG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	1189
Bst2UI	CCWGG	1 cut(s)	641
Bst4CI	ACNGT	5 cut(s)	210, 626, 694, 1116, 1244
Bst6I	CTCTTC	2 cut(s)	380, 1212
BstAFI	CTTAAG	1 cut(s)	1204
BstAUI	TGTACA	1 cut(s)	1173
BstBI	TTCGAA	1 cut(s)	688
BstC8I	GCNNGC	1 cut(s)	1027
BstDEI	CTNAG	6 cut(s)	54, 712, 822, 980, 1047, 1254
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	3 cut(s)	34, 112, 808
BstFNI	CGCG	1 cut(s)	954
BstH2I	RGCGCY	1 cut(s)	658
BstHHI	GCGC	1 cut(s)	657
BstKTI	GATC	4 cut(s)	250, 289, 412, 795
BstMAI	GTCTC	4 cut(s)	12, 404, 865, 1042
BstMBI	GATC	4 cut(s)	247, 286, 409, 792
BstNI	CCWGG	1 cut(s)	641
BstSCI	CCNGG	2 cut(s)	639, 989
BstSLI	GKGCMC	1 cut(s)	436
BstUI	CGCG	1 cut(s)	954
BstV1I	GCAGC	2 cut(s)	593, 1120
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	4 cut(s)	42, 644, 717, 1018
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	3 cut(s)	34, 112, 808
Cac8I	GCNNGC	1 cut(s)	1027
CaiI	CAGNNNCTG	3 cut(s)	646, 719, 1114
CfoI	GCGC	1 cut(s)	657
Cfr13I	GGNCC	3 cut(s)	643, 716, 1076
Csp6I	GTAC	3 cut(s)	314, 456, 1174
CspCI	CAANNNNNGTGG	4 cut(s)	1051, 1086, 1149, 1184
CviAII	CATG	7 cut(s)	25, 189, 240, 379, 416, 548, 579
CviQI	GTAC	3 cut(s)	314, 456, 1174
DdeI	CTNAG	6 cut(s)	54, 712, 822, 980, 1047, 1254
DpnI	GATC	4 cut(s)	249, 288, 411, 794
DpnII	GATC	4 cut(s)	247, 286, 409, 792
DraIII	CACNNNGTG	1 cut(s)	570
EaeI	YGGCCR	1 cut(s)	1016
Eam1104I	CTCTTC	2 cut(s)	380, 1212
EarI	CTCTTC	2 cut(s)	380, 1212
Ecl136II	GAGCTC	2 cut(s)	554, 996
Eco130I	CCWWGG	1 cut(s)	24
Eco147I	AGGCCT	1 cut(s)	42
Eco24I	GRGCYC	2 cut(s)	556, 998
Eco31I	GGTCTC	1 cut(s)	865
Eco47I	GGWCC	1 cut(s)	1076
Eco53kI	GAGCTC	2 cut(s)	554, 996
Eco88I	CYCGRG	3 cut(s)	483, 502, 1198
EcoICRI	GAGCTC	2 cut(s)	554, 996
EcoO109I	RGGNCCY	2 cut(s)	643, 716
EcoRII	CCWGG	1 cut(s)	639
EcoT14I	CCWWGG	1 cut(s)	24
EcoT38I	GRGCYC	2 cut(s)	556, 998
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	7 cut(s)	28, 192, 243, 382, 419, 551, 582
FatI	CATG	7 cut(s)	24, 188, 239, 378, 415, 547, 578
FbaI	TGATCA	2 cut(s)	409, 792
FblI	GTMKAC	1 cut(s)	957
Fnu4HI	GCNGC	4 cut(s)	604, 607, 1106, 1109
FokI	GGATG	3 cut(s)	41, 119, 815
FriOI	GRGCYC	2 cut(s)	556, 998
Fsp4HI	GCNGC	4 cut(s)	604, 607, 1106, 1109
GlaI	GCGC	1 cut(s)	656
GluI	GCNGC	4 cut(s)	604, 607, 1106, 1109
HaeII	RGCGCY	1 cut(s)	658
HaeIII	GGCC	4 cut(s)	42, 644, 717, 1018
HapII	CCGG	2 cut(s)	236, 991
HhaI	GCGC	1 cut(s)	657
Hin1II	CATG	7 cut(s)	28, 192, 243, 382, 419, 551, 582
Hin6I	GCGC	1 cut(s)	655
HinP1I	GCGC	1 cut(s)	655
HincII	GTYRAC	2 cut(s)	206, 877
HindII	GTYRAC	2 cut(s)	206, 877
HinfI	GANTC	7 cut(s)	20, 175, 347, 710, 1035, 1145, 1196
HpaII	CCGG	2 cut(s)	236, 991
HphI	GGTGA	2 cut(s)	621, 1111
Hpy166II	GTNNAC	6 cut(s)	206, 629, 877, 958, 1174, 1176
Hpy188I	TCNGA	6 cut(s)	47, 363, 709, 981, 1048, 1248
Hpy188III	TCNNGA	3 cut(s)	407, 831, 1151
Hpy8I	GTNNAC	6 cut(s)	206, 629, 877, 958, 1174, 1176
HpyAV	CCTTC	3 cut(s)	413, 436, 454
HpyCH4III	ACNGT	5 cut(s)	210, 626, 694, 1116, 1244
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	5 cut(s)	307, 564, 609, 649, 1062
HpyF3I	CTNAG	6 cut(s)	54, 712, 822, 980, 1047, 1254
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	7 cut(s)	28, 192, 243, 382, 419, 551, 582
HspAI	GCGC	1 cut(s)	655
Ksp22I	TGATCA	2 cut(s)	409, 792
Kzo9I	GATC	4 cut(s)	247, 286, 409, 792
LmnI	GCTCC	6 cut(s)	334, 517, 551, 559, 742, 993
Lsp1109I	GCAGC	2 cut(s)	593, 1120
LweI	GCATC	2 cut(s)	907, 1092
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	2 cut(s)	1193, 1208
MalI	GATC	4 cut(s)	249, 288, 411, 794
MboI	GATC	4 cut(s)	247, 286, 409, 792
MboII	GAAGA	9 cut(s)	143, 152, 191, 308, 367, 1111, 1114, 1144, 1229
MfeI	CAATTG	1 cut(s)	476
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	3 cut(s)	436, 556, 998
MlsI	TGGCCA	1 cut(s)	1018
MluI	ACGCGT	1 cut(s)	952
MluNI	TGGCCA	1 cut(s)	1018
MlyI	GAGTC	5 cut(s)	14, 184, 704, 1044, 1190
MmeI	TCCRAC	2 cut(s)	225, 764
MnlI	CCTC	8 cut(s)	53, 121, 492, 502, 793, 904, 1089, 1134
Mox20I	TGGCCA	1 cut(s)	1018
MroXI	GAANNNNTTC	2 cut(s)	464, 975
MscI	TGGCCA	1 cut(s)	1018
MseI	TTAA	4 cut(s)	255, 335, 939, 1205
Msp20I	TGGCCA	1 cut(s)	1018
MspCI	CTTAAG	1 cut(s)	1204
MspI	CCGG	2 cut(s)	236, 991
MspR9I	CCNGG	2 cut(s)	641, 991
MunI	CAATTG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	641
MvnI	CGCG	1 cut(s)	954
NciI	CCSGG	1 cut(s)	991
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	4 cut(s)	247, 286, 409, 792
NlaIII	CATG	7 cut(s)	28, 192, 243, 382, 419, 551, 582
NlaIV	GGNNCC	3 cut(s)	93, 249, 513
NmuCI	GTSAC	1 cut(s)	1193
NspV	TTCGAA	1 cut(s)	688
PaeR7I	CTCGAG	3 cut(s)	483, 502, 1198
PceI	AGGCCT	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	1196
PctI	GAATGC	1 cut(s)	680
PdmI	GAANNNNTTC	2 cut(s)	464, 975
PfeI	GAWTC	2 cut(s)	347, 1145
PfoI	TCCNGGA	1 cut(s)	989
PkrI	GCNGC	4 cut(s)	605, 608, 1107, 1110
PleI	GAGTC	5 cut(s)	14, 183, 704, 1043, 1190
PpsI	GAGTC	5 cut(s)	14, 183, 704, 1043, 1190
Psp124BI	GAGCTC	2 cut(s)	556, 998
Psp6I	CCWGG	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	639
PspN4I	GGNNCC	3 cut(s)	93, 249, 513
PspPI	GGNCC	3 cut(s)	643, 716, 1076
PspXI	VCTCGAGB	3 cut(s)	483, 502, 1198
PstNI	CAGNNNCTG	3 cut(s)	646, 719, 1114
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	3 cut(s)	315, 457, 1175
RsaNI	GTAC	3 cut(s)	314, 456, 1174
SacI	GAGCTC	2 cut(s)	556, 998
SaqAI	TTAA	4 cut(s)	255, 335, 939, 1205
SatI	GCNGC	4 cut(s)	604, 607, 1106, 1109
Sau3AI	GATC	4 cut(s)	247, 286, 409, 792
Sau96I	GGNCC	3 cut(s)	643, 716, 1076
SchI	GAGTC	5 cut(s)	14, 184, 704, 1044, 1190
ScrFI	CCNGG	2 cut(s)	641, 991
SduI	GDGCHC	3 cut(s)	436, 556, 998
SfaNI	GCATC	2 cut(s)	907, 1092
Sfr274I	CTCGAG	3 cut(s)	483, 502, 1198
SfuI	TTCGAA	1 cut(s)	688
SinI	GGWCC	1 cut(s)	1076
SlaI	CTCGAG	3 cut(s)	483, 502, 1198
SmlI	CTYRAG	4 cut(s)	483, 502, 1198, 1204
SmoI	CTYRAG	4 cut(s)	483, 502, 1198, 1204
SseBI	AGGCCT	1 cut(s)	42
SsiI	CCGC	6 cut(s)	86, 451, 557, 603, 1029, 1106
SstI	GAGCTC	2 cut(s)	556, 998
StuI	AGGCCT	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	639, 989
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	5 cut(s)	210, 626, 694, 1116, 1244
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	6 cut(s)	484, 503, 619, 688, 1152, 1199
TatI	WGTACW	2 cut(s)	313, 1173
TauI	GCSGC	2 cut(s)	606, 1108
TfiI	GAWTC	2 cut(s)	347, 1145
Tru1I	TTAA	4 cut(s)	255, 335, 939, 1205
Tru9I	TTAA	4 cut(s)	255, 335, 939, 1205
TseFI	GTSAC	1 cut(s)	1193
TseI	GCWGC	2 cut(s)	606, 1108
Tsp45I	GTSAC	1 cut(s)	1193
TspGWI	ACGGA	2 cut(s)	30, 458
Vha464I	CTTAAG	1 cut(s)	1204
VpaK11BI	GGWCC	1 cut(s)	1076
XapI	RAATTY	4 cut(s)	110, 182, 782, 1091
XhoI	CTCGAG	3 cut(s)	483, 502, 1198
XmiI	GTMKAC	1 cut(s)	957
XmnI	GAANNNNTTC	2 cut(s)	464, 975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.