Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006175

Physical Location & Seq

Genomic Coordinates Forward (+)

7241151 .. 7244507

Gene Structure 3357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G131100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGCTGGTGGTCTGAAAGATGATGATACGGAAGAGTTTAAGGGTCTTCGAATCGCCTCACTGGACGATGAAAGCGATGAAGAAGAAGAACAAAATGAACAAGATATTGTTATTGATGAAGACGATGAAGAAGAAGAAGACGAAGAAGCAAGAAAGTCTGTGGTTTTAGGTTTTGTGAAAATGCCTAAGACAGCCCGCTCTCTTCTTCGCCATTTCTTCCCTTCCAAGGCTGGAGGCGTTCCTGCTTGGTTGGATCCAGAAAATTTGCCATCCGGAAGATCTTGTTTTTGCGACATATGTGATGAACCTTTGCAGTTTGTGCTTCAGGTGTATGCACCAGAGGAGAAGCAATCTGCATTTCATCGAACGTTGTTTGTTTTTATGTGTACATCAATGGTGTGTCTTCGTCGAGATCAACATGAACAATGGAAATGCCATCAGGACAAGCCTTCTAGAAGTGTGAAGGTTTTCCGCTGCCAATTACCGCGTGATAATCCTTTCTACTCAAGTGAGCCACCAAAGAAGGATAGTACAGACCCGCCTCTTAAGGCTGGAGCTGCACTCTGTAATTGGTGTGGCAGCTGGAAAGGGATTAAACGCTGTACAGGTTGCAGAAGAGCACTTTATTGCTCAGAGAAACATTGGGTCAAGCATTCTCGGACTGGTCATGAACATGATTGTCAACGATTGAGGATAAGTTCTCAGTTGGCTGACAGTAGCTCTGATGAAACCACACCTGCAGTACTTCTAAAAGTTGCAAGCAACAATGTATGGCCAGAGTACAAAATTATACAGGAGTCTGAAAGTTCATACGAGACAGATATGCCTGATGATAATGTATGCACTAATTCCTTGGTGTCTAGTAACCGGACAGATGATGCACTAATGTCAATAGCAGAGAATTTCGAGGGTGATGATGACAGAAAGAGCTGGGCTTCATTCCATGAGCGCATAGCCCTGGCACCTGAGCAAGTATTGAGGTATTGTAGAATTCCTGGTGCAAAACCCTTATGGCCCGTGTCAAGTGGCCGTCCATCCAAGGCTGATATTCCTAAATGCAGTTATTGTGCCGGTCCATTGTGTTTTGAATTTCAGATTATGCCACAGTTGCTATTTTACTTTAATGTGAAGAATGACGTGGACTCTCTTGATTGGGCTACAATTGCTGTTTATACATGTGAAGCCTCCTGTGATGCAAGTGTGGCTTACAAAGAAGAATTCGCATGGGTTCAACTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD2_C zf-MYND

Protein Analysis

414

Amino Acids

46.93

Weight (kDa)

4.87

Isoelectric Point (pI)

60.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02220
fragaria_vesca	FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570
malus_domestica	MD05G1235200.v1.1 MD10G1211200.v1.1
prunus_persica	Prupe.4G131100_v2.0.a1
pyrus_communis	pycom05g21210
rosa_chinensis	RchiOBHm_Chr5g0024021
rosa_laevigata	RLG00000032755
rosa_multiflora	Rmu_sc0005837.1_g000013 Rmu_sc0011761.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055220
rosa_rugosa	Rorug05G0080800 Rorug05G0080900 Rorug05G0081000
rosa_samantha	Rh5AG171300 Rh5BG168000 Rh5CG183500 Rh5DG170000
rosa_wichuraiana	Rw5G015500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	745
Acc36I	ACCTGC	1 cut(s)	745
AccB1I	GGYRCC	1 cut(s)	961
AccBSI	CCGCTC	1 cut(s)	198
AccII	CGCG	1 cut(s)	487
AccIII	TCCGGA	1 cut(s)	272
AciI	CCGC	4 cut(s)	196, 472, 485, 539
AclI	AACGTT	1 cut(s)	368
AclWI	GGATC	2 cut(s)	248, 261
AcoI	YGGCCR	2 cut(s)	773, 1027
AcsI	RAATTY	5 cut(s)	262, 901, 990, 1088, 1217
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	5 cut(s)	388, 532, 604, 744, 782
AfiI	CCNNNNNNNGG	1 cut(s)	226
AflII	CTTAAG	1 cut(s)	545
AflIII	ACRYGT	1 cut(s)	1175
AgsI	TTSAA	2 cut(s)	1088, 1232
AjiI	CACGTC	1 cut(s)	1138
AjnI	CCWGG	2 cut(s)	957, 994
AluBI	AGCT	4 cut(s)	557, 582, 720, 930
AluI	AGCT	4 cut(s)	557, 582, 720, 930
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	1 cut(s)	809
AlwI	GGATC	2 cut(s)	248, 261
Aor13HI	TCCGGA	1 cut(s)	272
AoxI	GGCC	3 cut(s)	773, 1013, 1027
ApeKI	GCWGC	3 cut(s)	474, 557, 579
ApoI	RAATTY	5 cut(s)	262, 901, 990, 1088, 1217
Asp700I	GAANNNNTTC	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	951
AspS9I	GGNCC	2 cut(s)	1014, 1073
AsuHPI	GGTGA	1 cut(s)	923
AsuII	TTCGAA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	1073
BalI	TGGCCA	1 cut(s)	775
BamHI	GGATCC	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	961
BbsI	GAAGAC	4 cut(s)	38, 126, 144, 395
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	3 cut(s)	461, 544, 591
BccI	CCATC	3 cut(s)	277, 444, 1042
BceAI	ACGGC	1 cut(s)	1014
BciT130I	CCWGG	2 cut(s)	959, 996
BcoDI	GTCTC	1 cut(s)	809
BfaI	CTAG	2 cut(s)	453, 861
BfmI	CTRYAG	1 cut(s)	738
BfrI	CTTAAG	1 cut(s)	545
BfuAI	ACCTGC	1 cut(s)	745
BglII	AGATCT	1 cut(s)	278
BisI	GCNGC	3 cut(s)	475, 558, 580
BlsI	GCNGC	3 cut(s)	476, 559, 581
BmcAI	AGTACT	1 cut(s)	744
Bme1390I	CCNGG	2 cut(s)	959, 996
Bme18I	GGWCC	1 cut(s)	1073
BmgBI	CACGTC	1 cut(s)	1138
BmgT120I	GGNCC	2 cut(s)	1014, 1073
BmiI	GGNNCC	2 cut(s)	255, 963
BmrFI	CCNGG	2 cut(s)	959, 996
BmsI	GCATC	2 cut(s)	868, 1183
BpiI	GAAGAC	4 cut(s)	38, 126, 144, 395
BplI	GAGNNNNNCTC	2 cut(s)	546, 578
BpmI	CTGGAG	2 cut(s)	252, 573
Bpu10I	CCTNAGC	1 cut(s)	966
Bpu14I	TTCGAA	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	490
BsaJI	CCNNGG	4 cut(s)	225, 852, 957, 1038
BsaWI	WCCGGW	2 cut(s)	272, 867
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	1070
Bse1I	ACTGG	2 cut(s)	66, 667
BseAI	TCCGGA	1 cut(s)	272
BseBI	CCWGG	2 cut(s)	959, 996
BseDI	CCNNGG	4 cut(s)	225, 852, 957, 1038
BseGI	GGATG	2 cut(s)	269, 1034
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	3 cut(s)	645, 716, 957
BseNI	ACTGG	2 cut(s)	66, 667
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	3 cut(s)	461, 544, 591
BseYI	CCCAGC	1 cut(s)	930
BsgI	GTGCAG	1 cut(s)	543
Bsh1236I	CGCG	1 cut(s)	487
BshFI	GGCC	3 cut(s)	775, 1015, 1029
BshNI	GGYRCC	1 cut(s)	961
BsiHKAI	GWGCWC	1 cut(s)	622
BsiSI	CCGG	3 cut(s)	273, 868, 1071
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	809
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	3 cut(s)	775, 1015, 1029
Bsp119I	TTCGAA	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp13I	TCCGGA	1 cut(s)	272
Bsp1407I	TGTACA	2 cut(s)	386, 602
Bsp143I	GATC	3 cut(s)	253, 278, 412
BspACI	CCGC	4 cut(s)	196, 472, 485, 539
BspANI	GGCC	3 cut(s)	775, 1015, 1029
BspCNI	CTCAG	3 cut(s)	644, 715, 958
BspEI	TCCGGA	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	487
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	2 cut(s)	255, 963
BspMAI	CTGCAG	1 cut(s)	742
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	2 cut(s)	248, 261
BspQI	GCTCTTC	1 cut(s)	610
BspT104I	TTCGAA	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	961
BspTI	CTTAAG	1 cut(s)	545
BsrBI	CCGCTC	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	1070
BsrGI	TGTACA	2 cut(s)	386, 602
BsrI	ACTGG	2 cut(s)	66, 667
BssAI	RCCGGY	1 cut(s)	1070
BssECI	CCNNGG	4 cut(s)	225, 852, 957, 1038
BssMI	GATC	3 cut(s)	253, 278, 412
BssT1I	CCWWGG	3 cut(s)	225, 852, 1038
Bst2UI	CCWGG	2 cut(s)	959, 996
Bst4CI	ACNGT	2 cut(s)	716, 1107
Bst6I	CTCTTC	3 cut(s)	27, 207, 610
BstAFI	CTTAAG	1 cut(s)	545
BstAPI	GCANNNNNTGC	1 cut(s)	319
BstAUI	TGTACA	2 cut(s)	386, 602
BstBI	TTCGAA	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	196, 760
BstDEI	CTNAG	5 cut(s)	186, 631, 702, 966, 1239
BstF5I	GGATG	2 cut(s)	269, 1034
BstFNI	CGCG	1 cut(s)	487
BstHHI	GCGC	1 cut(s)	951
BstKTI	GATC	3 cut(s)	256, 281, 415
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	3 cut(s)	253, 278, 412
BstMWI	GCNNNNNNNGC	5 cut(s)	319, 557, 1108, 1163, 1202
BstNI	CCWGG	2 cut(s)	959, 996
BstNSI	RCATGY	1 cut(s)	1179
BstSCI	CCNGG	2 cut(s)	957, 994
BstSFI	CTRYAG	1 cut(s)	738
BstUI	CGCG	1 cut(s)	487
BstV1I	GCAGC	3 cut(s)	461, 544, 591
BstV2I	GAAGAC	4 cut(s)	38, 126, 144, 395
BstX2I	RGATCY	2 cut(s)	253, 278
BstYI	RGATCY	2 cut(s)	253, 278
BsuRI	GGCC	3 cut(s)	775, 1015, 1029
BtgZI	GCGATG	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	1138
BtsCI	GGATG	2 cut(s)	269, 1034
BtsIMutI	CAGTG	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	2 cut(s)	196, 760
CciI	TCATGA	1 cut(s)	667
CfoI	GCGC	1 cut(s)	951
Cfr10I	RCCGGY	1 cut(s)	1070
Cfr13I	GGNCC	2 cut(s)	1014, 1073
Csp6I	GTAC	5 cut(s)	387, 531, 603, 743, 781
CviAII	CATG	6 cut(s)	419, 668, 674, 944, 1176, 1224
CviQI	GTAC	5 cut(s)	387, 531, 603, 743, 781
DdeI	CTNAG	5 cut(s)	186, 631, 702, 966, 1239
DpnI	GATC	3 cut(s)	255, 280, 414
DpnII	GATC	3 cut(s)	253, 278, 412
EaeI	YGGCCR	2 cut(s)	773, 1027
Eam1104I	CTCTTC	3 cut(s)	27, 207, 610
EarI	CTCTTC	3 cut(s)	27, 207, 610
Eco130I	CCWWGG	3 cut(s)	225, 852, 1038
Eco47I	GGWCC	1 cut(s)	1073
Eco57I	CTGAAG	1 cut(s)	308
EcoRI	GAATTC	2 cut(s)	990, 1217
EcoRII	CCWGG	2 cut(s)	957, 994
EcoT14I	CCWWGG	3 cut(s)	225, 852, 1038
ErhI	CCWWGG	3 cut(s)	225, 852, 1038
FaeI	CATG	6 cut(s)	422, 671, 677, 947, 1179, 1227
FalI	AAGNNNNNCTT	2 cut(s)	1189, 1221
FatI	CATG	6 cut(s)	418, 667, 673, 943, 1175, 1223
FauI	CCCGC	2 cut(s)	203, 546
FauNDI	CATATG	1 cut(s)	296
Fnu4HI	GCNGC	3 cut(s)	475, 558, 580
FokI	GGATG	2 cut(s)	256, 1021
Fsp4HI	GCNGC	3 cut(s)	475, 558, 580
FspBI	CTAG	2 cut(s)	453, 861
GlaI	GCGC	1 cut(s)	950
GluI	GCNGC	3 cut(s)	475, 558, 580
GsaI	CCCAGC	1 cut(s)	934
GsuI	CTGGAG	2 cut(s)	252, 573
HaeIII	GGCC	3 cut(s)	775, 1015, 1029
HapII	CCGG	3 cut(s)	273, 868, 1071
HhaI	GCGC	1 cut(s)	951
Hin1II	CATG	6 cut(s)	422, 671, 677, 947, 1179, 1227
Hin6I	GCGC	1 cut(s)	949
HinP1I	GCGC	1 cut(s)	949
HincII	GTYRAC	1 cut(s)	683
HindII	GTYRAC	1 cut(s)	683
HinfI	GANTC	3 cut(s)	51, 797, 1142
HpaII	CCGG	3 cut(s)	273, 868, 1071
HphI	GGTGA	1 cut(s)	923
Hpy166II	GTNNAC	3 cut(s)	387, 683, 1141
Hpy188I	TCNGA	6 cut(s)	15, 634, 660, 724, 802, 1095
Hpy188III	TCNNGA	7 cut(s)	257, 273, 410, 440, 453, 668, 1148
Hpy8I	GTNNAC	3 cut(s)	387, 683, 1141
Hpy99I	CGWCG	1 cut(s)	411
HpyAV	CCTTC	4 cut(s)	231, 457, 459, 517
HpyCH4III	ACNGT	2 cut(s)	716, 1107
HpyCH4IV	ACGT	2 cut(s)	368, 1137
HpyF10VI	GCNNNNNNNGC	5 cut(s)	319, 557, 1108, 1163, 1202
HpyF3I	CTNAG	5 cut(s)	186, 631, 702, 966, 1239
HpySE526I	ACGT	2 cut(s)	368, 1137
Hsp92II	CATG	6 cut(s)	422, 671, 677, 947, 1179, 1227
HspAI	GCGC	1 cut(s)	949
Kpn2I	TCCGGA	1 cut(s)	272
Kzo9I	GATC	3 cut(s)	253, 278, 412
LguI	GCTCTTC	1 cut(s)	610
LmnI	GCTCC	1 cut(s)	554
Lsp1109I	GCAGC	3 cut(s)	461, 544, 591
LweI	GCATC	2 cut(s)	868, 1183
MaeI	CTAG	2 cut(s)	453, 861
MaeII	ACGT	2 cut(s)	368, 1137
MaeIII	GTNAC	1 cut(s)	863
MalI	GATC	3 cut(s)	255, 280, 414
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	3 cut(s)	253, 278, 412
MfeI	CAATTG	1 cut(s)	1161
MflI	RGATCY	2 cut(s)	253, 278
MhlI	GDGCHC	1 cut(s)	622
MlsI	TGGCCA	1 cut(s)	775
MluNI	TGGCCA	1 cut(s)	775
MlyI	GAGTC	2 cut(s)	806, 1136
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	8 cut(s)	67, 227, 334, 552, 684, 901, 972, 1195
Mox20I	TGGCCA	1 cut(s)	775
MroI	TCCGGA	1 cut(s)	272
MroXI	GAANNNNTTC	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	775
MseI	TTAA	4 cut(s)	39, 546, 594, 1122
MslI	CAYNNNNRTG	1 cut(s)	672
Msp20I	TGGCCA	1 cut(s)	775
MspA1I	CMGCKG	2 cut(s)	474, 582
MspCI	CTTAAG	1 cut(s)	545
MspI	CCGG	3 cut(s)	273, 868, 1071
MspR9I	CCNGG	2 cut(s)	959, 996
MunI	CAATTG	1 cut(s)	1161
Mva1269I	GAATGC	1 cut(s)	652
MvaI	CCWGG	2 cut(s)	959, 996
MvnI	CGCG	1 cut(s)	487
MwoI	GCNNNNNNNGC	5 cut(s)	319, 557, 1108, 1163, 1202
NdeI	CATATG	1 cut(s)	296
NdeII	GATC	3 cut(s)	253, 278, 412
NlaIII	CATG	6 cut(s)	422, 671, 677, 947, 1179, 1227
NlaIV	GGNNCC	2 cut(s)	255, 963
NspI	RCATGY	1 cut(s)	1179
NspV	TTCGAA	1 cut(s)	49
PagI	TCATGA	1 cut(s)	667
PaqCI	CACCTGC	1 cut(s)	745
PciI	ACATGT	1 cut(s)	1175
PciSI	GCTCTTC	1 cut(s)	610
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	652
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	51
PkrI	GCNGC	3 cut(s)	476, 559, 581
PleI	GAGTC	2 cut(s)	805, 1136
PpsI	GAGTC	2 cut(s)	805, 1136
PscI	ACATGT	1 cut(s)	1175
Psp1406I	AACGTT	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	957, 994
PspFI	CCCAGC	1 cut(s)	930
PspGI	CCWGG	2 cut(s)	957, 994
PspN4I	GGNNCC	2 cut(s)	255, 963
PspPI	GGNCC	2 cut(s)	1014, 1073
PstI	CTGCAG	1 cut(s)	742
PsuI	RGATCY	2 cut(s)	253, 278
PvuII	CAGCTG	1 cut(s)	582
RsaI	GTAC	5 cut(s)	388, 532, 604, 744, 782
RsaNI	GTAC	5 cut(s)	387, 531, 603, 743, 781
RseI	CAYNNNNRTG	1 cut(s)	672
SapI	GCTCTTC	1 cut(s)	610
SaqAI	TTAA	4 cut(s)	39, 546, 594, 1122
SatI	GCNGC	3 cut(s)	475, 558, 580
Sau3AI	GATC	3 cut(s)	253, 278, 412
Sau96I	GGNCC	2 cut(s)	1014, 1073
ScaI	AGTACT	1 cut(s)	744
SchI	GAGTC	2 cut(s)	806, 1136
ScrFI	CCNGG	2 cut(s)	959, 996
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	2 cut(s)	868, 1183
SfcI	CTRYAG	1 cut(s)	738
SfuI	TTCGAA	1 cut(s)	49
SinI	GGWCC	1 cut(s)	1073
SmiMI	CAYNNNNRTG	1 cut(s)	672
SmlI	CTYRAG	2 cut(s)	505, 545
SmoI	CTYRAG	2 cut(s)	505, 545
SsiI	CCGC	4 cut(s)	196, 472, 485, 539
SspMI	CTAG	2 cut(s)	453, 861
StyD4I	CCNGG	2 cut(s)	957, 994
StyI	CCWWGG	3 cut(s)	225, 852, 1038
TaaI	ACNGT	2 cut(s)	716, 1107
TaiI	ACGT	2 cut(s)	371, 1140
TaqI	TCGA	4 cut(s)	49, 364, 409, 906
TatI	WGTACW	5 cut(s)	386, 530, 602, 742, 780
TfiI	GAWTC	1 cut(s)	51
Tru1I	TTAA	4 cut(s)	39, 546, 594, 1122
Tru9I	TTAA	4 cut(s)	39, 546, 594, 1122
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	3 cut(s)	474, 557, 579
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	66
Vha464I	CTTAAG	1 cut(s)	545
VpaK11BI	GGWCC	1 cut(s)	1073
XapI	RAATTY	5 cut(s)	262, 901, 990, 1088, 1217
XbaI	TCTAGA	1 cut(s)	452
XceI	RCATGY	1 cut(s)	1179
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	2 cut(s)	453, 861
ZrmI	AGTACT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.