Rorug05G0080800

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006175
Physical Location & Seq
Reverse (-)
6983904 .. 6984753
850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0080800.1

Sequence Viewer

Length: 732 bp
ATGCTAGGCAACATTCGTCATCGAAATCTGATCAAAATCATCAGTTGCTGCAATCAAATTGATTTCAAAGCCGTGGTACTGCACTACATGCCTAATGGGAGCCTTGAGAAGTGGTTGTATTCTCTAAAATTTTCTTTAAACATCCTGCAGAGGTTAAGTATTATGATAGATGTTGCATCGGCATTGGAATACCTTCATCATGGCTATGGAACACCTATTGTTCATTGTGATTTGAAGCCCAGCAATATCCTTCTGGATAAGGATATGAGTGCACATGTAGCTGACTTTGGCATTGCAAAACTCTTGTGTGGAAGAGATTCGTTGACCCGAACCATCACTCAAGCCACAATTGGATATATGGCCCCAGAGTATGGAATGGAAGGAATAGTTACTAGAAGAGGAGATGTTTACAGTTTTGGTATTGTACTGATGGAAACATTCACAAAAAAGAAGCCAACAGATGAGATGTTTGGGGACATCAGTTTGAAGCAATGGGTTGCAAATTCACCATTAGTTGATGTCGTTGATGCCAACTTACTTGGGACAGAAGAAGGAAATCATGAATTTGAGAACAAAAGGGAGTGTTTATCATCCATTATGAGATTAGCTCTAGCTTGTTCCATCGAATCACCAGATGGGAGGATAAATATGCAAGAGGCTCTAGCCACTCTAAACAAAATCAAAAACAAGTTTTTCAAGGATGCTGCTTATGATGGGTTTCATTTCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDCD2_C zf-MYND

Protein Analysis

243

Amino Acids

27.33

Weight (kDa)

6.44

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 222 5.3e-33 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 222 1.1e-31 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 371
AcsI RAATTY 3 cut(s) 128, 502, 563
AfaI GTAC 2 cut(s) 78, 426
AfiI CCNNNNNNNGG 1 cut(s) 371
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 4 cut(s) 67, 235, 487, 697
AluBI AGCT 3 cut(s) 281, 608, 614
AluI AGCT 3 cut(s) 281, 608, 614
Alw21I GWGCWC 1 cut(s) 274
Alw44I GTGCAC 1 cut(s) 270
AlwNI CAGNNNCTG 1 cut(s) 48
AoxI GGCC 1 cut(s) 360
ApaLI GTGCAC 1 cut(s) 270
ApeKI GCWGC 2 cut(s) 48, 704
ApoI RAATTY 3 cut(s) 128, 502, 563
Asp700I GAANNNNTTC 2 cut(s) 192, 316
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 498, 621
BaeGI GKGCMC 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 2 cut(s) 35, 691
BccI CCATC 5 cut(s) 341, 424, 629, 629, 707
BceAI ACGGC 1 cut(s) 56
BclI TGATCA 1 cut(s) 30
BfaI CTAG 4 cut(s) 5, 393, 611, 662
BfmI CTRYAG 1 cut(s) 146
BisI GCNGC 2 cut(s) 49, 705
BlsI GCNGC 2 cut(s) 50, 706
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 2 cut(s) 101, 363
BmsI GCATC 3 cut(s) 185, 517, 691
BplI GAGNNNNNCTC 2 cut(s) 592, 624
BpuEI CTTGAG 2 cut(s) 125, 324
BsaBI GATNNNNATC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse3DI GCAATG 2 cut(s) 291, 497
Bse8I GATNNNNATC 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 3 cut(s) 141, 590, 706
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 2 cut(s) 291, 497
BseRI GAGGAG 1 cut(s) 414
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 2 cut(s) 35, 691
BseYI CCCAGC 1 cut(s) 239
BsgI GTGCAG 1 cut(s) 65
BshFI GGCC 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 274
BslFI GGGAC 2 cut(s) 488, 556
BslI CCNNNNNNNGG 1 cut(s) 371
BsmFI GGGAC 2 cut(s) 488, 556
BsnI GGCC 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 1 cut(s) 30
BspANI GGCC 1 cut(s) 362
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 2 cut(s) 101, 363
BspMAI CTGCAG 1 cut(s) 150
BsrDI GCAATG 2 cut(s) 291, 497
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 2 cut(s) 307, 391
BstAPI GCANNNNNTGC 1 cut(s) 88
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 3 cut(s) 141, 590, 706
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 88, 278
BstNSI RCATGY 2 cut(s) 91, 278
BstSFI CTRYAG 1 cut(s) 146
BstSLI GKGCMC 1 cut(s) 274
BstV1I GCAGC 2 cut(s) 35, 691
BsuRI GGCC 1 cut(s) 362
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 3 cut(s) 141, 590, 706
CaiI CAGNNNCTG 1 cut(s) 48
CciI TCATGA 1 cut(s) 559
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 2 cut(s) 77, 425
CviAII CATG 4 cut(s) 88, 200, 275, 560
CviQI GTAC 2 cut(s) 77, 425
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
DraI TTTAAA 1 cut(s) 138
Eam1104I CTCTTC 2 cut(s) 307, 391
EarI CTCTTC 2 cut(s) 307, 391
FaeI CATG 4 cut(s) 91, 203, 278, 563
FaqI GGGAC 2 cut(s) 488, 556
FatI CATG 4 cut(s) 87, 199, 274, 559
FbaI TGATCA 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 49, 705
FokI GGATG 3 cut(s) 128, 577, 713
Fsp4HI GCNGC 2 cut(s) 49, 705
FspBI CTAG 4 cut(s) 5, 393, 611, 662
GluI GCNGC 2 cut(s) 49, 705
GsaI CCCAGC 1 cut(s) 243
HaeIII GGCC 1 cut(s) 362
Hin1II CATG 4 cut(s) 91, 203, 278, 563
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 2 cut(s) 317, 626
HphI GGTGA 2 cut(s) 498, 621
Hpy166II GTNNAC 3 cut(s) 272, 324, 409
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 2 cut(s) 254, 560
Hpy8I GTNNAC 3 cut(s) 272, 324, 409
HpyAV CCTTC 4 cut(s) 203, 260, 374, 545
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4V TGCA 8 cut(s) 51, 82, 148, 176, 272, 296, 500, 652
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 278
Hsp92II CATG 4 cut(s) 91, 203, 278, 563
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 5 cut(s) 158, 239, 253, 378, 645
Lsp1109I GCAGC 2 cut(s) 35, 691
LweI GCATC 3 cut(s) 185, 517, 691
MaeI CTAG 4 cut(s) 5, 393, 611, 662
MaeIII GTNAC 1 cut(s) 388
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 3 cut(s) 324, 408, 560
MfeI CAATTG 1 cut(s) 348
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 5 cut(s) 57, 128, 348, 502, 563
MnlI CCTC 4 cut(s) 144, 392, 633, 649
MroXI GAANNNNTTC 2 cut(s) 192, 316
MseI TTAA 2 cut(s) 137, 155
MslI CAYNNNNRTG 1 cut(s) 204
MunI CAATTG 1 cut(s) 348
MwoI GCNNNNNNNGC 2 cut(s) 88, 278
NdeII GATC 1 cut(s) 30
NlaIII CATG 4 cut(s) 91, 203, 278, 563
NlaIV GGNNCC 2 cut(s) 101, 363
NspI RCATGY 2 cut(s) 91, 278
PagI TCATGA 1 cut(s) 559
PciI ACATGT 1 cut(s) 274
PdmI GAANNNNTTC 2 cut(s) 192, 316
PfeI GAWTC 2 cut(s) 317, 626
PflMI CCANNNNNTGG 1 cut(s) 371
PkrI GCNGC 2 cut(s) 50, 706
PscI ACATGT 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 101, 363
PspPI GGNCC 1 cut(s) 361
PstI CTGCAG 1 cut(s) 150
PstNI CAGNNNCTG 1 cut(s) 48
RsaI GTAC 2 cut(s) 78, 426
RsaNI GTAC 2 cut(s) 77, 425
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 2 cut(s) 137, 155
SatI GCNGC 2 cut(s) 49, 705
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 361
SduI GDGCHC 1 cut(s) 274
SetI ASST 6 cut(s) 155, 195, 217, 283, 610, 616
SfaNI GCATC 3 cut(s) 185, 517, 691
SfcI CTRYAG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 2 cut(s) 104, 339
SmoI CTYRAG 2 cut(s) 104, 339
Sse9I AATT 5 cut(s) 57, 128, 348, 502, 563
SspMI CTAG 4 cut(s) 5, 393, 611, 662
TaaI ACNGT 1 cut(s) 413
TaqI TCGA 2 cut(s) 22, 624
TasI AATT 5 cut(s) 57, 128, 348, 502, 563
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 2 cut(s) 317, 626
Tru1I TTAA 2 cut(s) 137, 155
Tru9I TTAA 2 cut(s) 137, 155
TseI GCWGC 2 cut(s) 48, 704
TspDTI ATGAA 4 cut(s) 185, 212, 576, 710
Van91I CCANNNNNTGG 1 cut(s) 371
VneI GTGCAC 1 cut(s) 270
XapI RAATTY 3 cut(s) 128, 502, 563
XceI RCATGY 2 cut(s) 91, 278
XmnI GAANNNNTTC 2 cut(s) 192, 316
XspI CTAG 4 cut(s) 5, 393, 611, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.