Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006175

Physical Location & Seq

Genomic Coordinates Forward (+)

8984596 .. 8989384

Gene Structure 4789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14570.t9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGAGGGTGGTCTGAAAGGTGATGGTACAGAAGAGCTTAAGGGTCTTCGAATCACCTCACTGGATGATGAGAGTGATGAAGAAGAGGAACAGCTGAAAGAACAGGAAATTGTTGTGGATAACGATGATGAGGAAGAGGAAGAAGATGAAGAAGCAAGAGACTCTATGGTTTTAGGTTTTGTGAAAAGGCCCAAGAAAGCCAGCTCTCTTCTACGCCATTTCTTCCCTTCCAAGGCTGGAGGAGTTCCTGCTTGGTTGGATCCAGAAAATTTGCCATCCGGAAGATCTTGTCTTTGCGACCTATGTGGTGAACCTTTACAATTTATGCTTCAGGTGTATGCACCAGAGGAGAAGCCATCCACATTTCATCGAACATTGTTTGTTTTTATGTGTACGTCAATGGCGTGTCTTCGTCGAGATCAACATGAGCAATGGAAAAGCCATCGGGAAAATCCTTCTAGAAGTGTGAAGGTTTTCCGCTGCCAATTACCTCGTGATAATCCTTTCTACCCAAGTGAGCCCCCAAAGAAGGATACTGAGCCACCGGAGGCTAGAGCTGCGCTCTGCAATTGGTGTGGTACCTGGAAAGGGATTAAACGCTGTACTGGTTGCAGACAAACACTATATTGCTCAGAGAAACATTGGGTCGAGCATTCCCGCTCCGGTCATGAATCTGACTGTCAGCGTATGAGGATAAGTTCTCAGTTGGTTGAAGGTAGCTCTGCCACCGCTGTATACCCTCCTGCTGTACTTCAGAAAGTTGCAAGCAAAGCTCTATGGCCTGAATACAAAATCATACAGGAGTTTGAAAGTGATTATGACACACAGATGCCTGATAATAATGTGAATGCTAATTCTATGGTCTCTAGGAACCAGATGGATGATGGATTGATGTCGATAGCGGACAGTTTTGAGGGCGATGGTGACAAAAAGAGCTGGGCTTCATTTCAAGAGCGAATAGGCCTGGCCCCTGAACAAGTATTAAGATACTGTAGGAGTTCTGGTGCAAAACCCCTATGGCCCCTGACTAGTGGCCGACCATCAAAGGCTGACATTCCTAAATGCCATTATTGTGATGGTCCATTGTGTTTTGAATTTCAGATTTTGCCTCAGTTGCTATATTACTTTCATGTGAAGAATGACGCAGACTCTCTTGATTGGGCTACAATTGTTGTGTATACATGTGAAGCCTCTTGTGATGCCAGTGTGGTTTACAAAGAAGAATTTGCTTGGGTCCAAATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD2_C zf-MYND

Protein Analysis

416

Amino Acids

47.22

Weight (kDa)

4.95

Isoelectric Point (pI)

62.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02220
fragaria_vesca	FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570
malus_domestica	MD05G1235200.v1.1 MD10G1211200.v1.1
prunus_persica	Prupe.4G131100_v2.0.a1
pyrus_communis	pycom05g21210
rosa_chinensis	RchiOBHm_Chr5g0024021
rosa_laevigata	RLG00000032755
rosa_multiflora	Rmu_sc0005837.1_g000013 Rmu_sc0011761.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055220
rosa_rugosa	Rorug05G0080800 Rorug05G0080900 Rorug05G0081000
rosa_samantha	Rh5AG171300 Rh5BG168000 Rh5CG183500 Rh5DG170000
rosa_wichuraiana	Rw5G015500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	578
AccB1I	GGYRCC	1 cut(s)	578
AccBSI	CCGCTC	1 cut(s)	660
AccI	GTMKAC	2 cut(s)	735, 1178
AccIII	TCCGGA	1 cut(s)	278
AciI	CCGC	4 cut(s)	478, 658, 729, 902
AclWI	GGATC	2 cut(s)	254, 267
AcoI	YGGCCR	1 cut(s)	1033
AcsI	RAATTY	4 cut(s)	268, 1094, 1223, 1239
AcuI	CTGAAG	2 cut(s)	314, 737
AfaI	GTAC	5 cut(s)	28, 394, 580, 604, 750
AfiI	CCNNNNNNNGG	3 cut(s)	232, 529, 588
AflII	CTTAAG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	1181
AgsI	TTSAA	4 cut(s)	713, 809, 950, 1094
AhlI	ACTAGT	1 cut(s)	1028
AjnI	CCWGG	2 cut(s)	581, 963
AluBI	AGCT	7 cut(s)	37, 94, 204, 557, 720, 773, 936
AluI	AGCT	7 cut(s)	37, 94, 204, 557, 720, 773, 936
Alw26I	GTCTC	2 cut(s)	153, 868
AlwI	GGATC	2 cut(s)	254, 267
Aor13HI	TCCGGA	1 cut(s)	278
AoxI	GGCC	6 cut(s)	188, 779, 961, 966, 1019, 1033
ApeKI	GCWGC	2 cut(s)	480, 557
ApoI	RAATTY	4 cut(s)	268, 1094, 1223, 1239
Asp700I	GAANNNNTTC	1 cut(s)	473
Asp718I	GGTACC	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	5 cut(s)	189, 967, 1020, 1079, 1234
AsuHPI	GGTGA	4 cut(s)	32, 46, 320, 935
AsuII	TTCGAA	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	1079, 1234
BamHI	GGATCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	578
BanII	GRGCYC	1 cut(s)	522
BauI	CACGAG	1 cut(s)	492
BbsI	GAAGAC	2 cut(s)	38, 401
BbvI	GCAGC	2 cut(s)	467, 544
BccI	CCATC	9 cut(s)	17, 283, 364, 450, 871, 878, 914, 1048, 1070
BciT130I	CCWGG	2 cut(s)	583, 965
BciVI	GTATCC	1 cut(s)	526
BcoDI	GTCTC	2 cut(s)	153, 868
BcuI	ACTAGT	1 cut(s)	1028
BfaI	CTAG	4 cut(s)	459, 552, 867, 1029
BfmI	CTRYAG	1 cut(s)	991
BfrI	CTTAAG	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	526
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	2 cut(s)	481, 558
BlsI	GCNGC	2 cut(s)	482, 559
Bme1390I	CCNGG	2 cut(s)	583, 965
Bme18I	GGWCC	2 cut(s)	1079, 1234
BmgT120I	GGNCC	5 cut(s)	189, 967, 1020, 1079, 1234
BmiI	GGNNCC	6 cut(s)	261, 580, 872, 969, 1022, 1235
BmrFI	CCNGG	2 cut(s)	583, 965
BmsI	GCATC	2 cut(s)	819, 1189
BpiI	GAAGAC	2 cut(s)	38, 401
BplI	GAGNNNNNCTC	2 cut(s)	546, 578
BpmI	CTGGAG	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	868
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	3 cut(s)	278, 544, 662
BsaXI	ACNNNNNCTCC	2 cut(s)	988, 1018
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 529, 588
Bse1I	ACTGG	3 cut(s)	66, 610, 1203
Bse3DI	GCAATG	1 cut(s)	437
BseAI	TCCGGA	1 cut(s)	278
BseBI	CCWGG	2 cut(s)	583, 965
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	4 cut(s)	70, 275, 356, 886
BseLI	CCNNNNNNNGG	3 cut(s)	232, 529, 588
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	4 cut(s)	528, 645, 716, 1124
BseNI	ACTGG	3 cut(s)	66, 610, 1203
BseRI	GAGGAG	2 cut(s)	255, 362
BseXI	GCAGC	2 cut(s)	467, 544
BseYI	CCCAGC	1 cut(s)	936
BshFI	GGCC	6 cut(s)	190, 781, 963, 968, 1021, 1035
BshNI	GGYRCC	1 cut(s)	578
BsiSI	CCGG	3 cut(s)	279, 545, 663
BslI	CCNNNNNNNGG	3 cut(s)	232, 529, 588
BsmAI	GTCTC	2 cut(s)	153, 868
BsmI	GAATGC	2 cut(s)	652, 853
BsnI	GGCC	6 cut(s)	190, 781, 963, 968, 1021, 1035
Bso31I	GGTCTC	1 cut(s)	868
Bsp119I	TTCGAA	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp13I	TCCGGA	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	259, 284, 418
BspACI	CCGC	4 cut(s)	478, 658, 729, 902
BspANI	GGCC	6 cut(s)	190, 781, 963, 968, 1021, 1035
BspCNI	CTCAG	4 cut(s)	529, 644, 715, 1123
BspEI	TCCGGA	1 cut(s)	278
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	6 cut(s)	261, 580, 872, 969, 1022, 1235
BspPI	GGATC	2 cut(s)	254, 267
BspQI	GCTCTTC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	578
BspTI	CTTAAG	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	868
BsrBI	CCGCTC	1 cut(s)	660
BsrDI	GCAATG	1 cut(s)	437
BsrI	ACTGG	3 cut(s)	66, 610, 1203
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	3 cut(s)	259, 284, 418
BssNAI	GTATAC	2 cut(s)	736, 1179
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	231
Bst1107I	GTATAC	2 cut(s)	736, 1179
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	583, 965
Bst4CI	ACNGT	3 cut(s)	680, 908, 992
Bst6I	CTCTTC	4 cut(s)	27, 78, 129, 213
BstAFI	CTTAAG	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	202, 766
BstDEI	CTNAG	5 cut(s)	537, 631, 702, 1110, 1245
BstF5I	GGATG	4 cut(s)	70, 275, 356, 886
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	3 cut(s)	262, 287, 421
BstMAI	GTCTC	2 cut(s)	153, 868
BstMBI	GATC	3 cut(s)	259, 284, 418
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 770, 1114
BstNI	CCWGG	2 cut(s)	583, 965
BstNSI	RCATGY	1 cut(s)	1185
BstSCI	CCNGG	2 cut(s)	581, 963
BstSFI	CTRYAG	1 cut(s)	991
BstV1I	GCAGC	2 cut(s)	467, 544
BstV2I	GAAGAC	2 cut(s)	38, 401
BstX2I	RGATCY	2 cut(s)	259, 284
BstYI	RGATCY	2 cut(s)	259, 284
BstZ17I	GTATAC	2 cut(s)	736, 1179
BsuI	GTATCC	1 cut(s)	526
BsuRI	GGCC	6 cut(s)	190, 781, 963, 968, 1021, 1035
BtgZI	GCGATG	1 cut(s)	933
BtsCI	GGATG	4 cut(s)	70, 275, 356, 886
BtsIMutI	CAGTG	2 cut(s)	59, 1210
Cac8I	GCNNGC	2 cut(s)	202, 766
CciI	TCATGA	1 cut(s)	667
CfoI	GCGC	1 cut(s)	562
Cfr13I	GGNCC	5 cut(s)	189, 967, 1020, 1079, 1234
CseI	GACGC	1 cut(s)	1151
Csp6I	GTAC	5 cut(s)	27, 393, 579, 603, 749
CspCI	CAANNNNNGTGG	2 cut(s)	556, 591
CviAII	CATG	4 cut(s)	425, 668, 1130, 1182
CviQI	GTAC	5 cut(s)	27, 393, 579, 603, 749
DdeI	CTNAG	5 cut(s)	537, 631, 702, 1110, 1245
DpnI	GATC	3 cut(s)	261, 286, 420
DpnII	GATC	3 cut(s)	259, 284, 418
EaeI	YGGCCR	1 cut(s)	1033
Eam1104I	CTCTTC	4 cut(s)	27, 78, 129, 213
EarI	CTCTTC	4 cut(s)	27, 78, 129, 213
Eco130I	CCWWGG	1 cut(s)	231
Eco147I	AGGCCT	1 cut(s)	963
Eco24I	GRGCYC	1 cut(s)	522
Eco31I	GGTCTC	1 cut(s)	868
Eco47I	GGWCC	2 cut(s)	1079, 1234
Eco57I	CTGAAG	2 cut(s)	314, 737
EcoRII	CCWGG	2 cut(s)	581, 963
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	4 cut(s)	428, 671, 1133, 1185
FatI	CATG	4 cut(s)	424, 667, 1129, 1181
FauI	CCCGC	1 cut(s)	665
FblI	GTMKAC	2 cut(s)	735, 1178
Fnu4HI	GCNGC	2 cut(s)	481, 558
FokI	GGATG	4 cut(s)	77, 262, 343, 893
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	2 cut(s)	481, 558
FspBI	CTAG	4 cut(s)	459, 552, 867, 1029
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	2 cut(s)	481, 558
GsaI	CCCAGC	1 cut(s)	940
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	6 cut(s)	190, 781, 963, 968, 1021, 1035
HapII	CCGG	3 cut(s)	279, 545, 663
HgaI	GACGC	1 cut(s)	1151
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	4 cut(s)	428, 671, 1133, 1185
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HinfI	GANTC	4 cut(s)	51, 161, 671, 1148
HpaII	CCGG	3 cut(s)	279, 545, 663
HphI	GGTGA	4 cut(s)	32, 46, 320, 935
Hpy166II	GTNNAC	5 cut(s)	311, 393, 736, 1179, 1213
Hpy188I	TCNGA	5 cut(s)	15, 634, 676, 756, 1101
Hpy188III	TCNNGA	9 cut(s)	263, 279, 416, 446, 459, 494, 668, 950, 1154
Hpy8I	GTNNAC	5 cut(s)	311, 393, 736, 1179, 1213
Hpy99I	CGWCG	1 cut(s)	417
HpyAV	CCTTC	5 cut(s)	237, 463, 465, 523, 707
HpyCH4III	ACNGT	3 cut(s)	680, 908, 992
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	5 cut(s)	341, 567, 612, 764, 1007
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 770, 1114
HpyF3I	CTNAG	5 cut(s)	537, 631, 702, 1110, 1245
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	4 cut(s)	428, 671, 1133, 1185
HspAI	GCGC	1 cut(s)	560
Kpn2I	TCCGGA	1 cut(s)	278
KpnI	GGTACC	1 cut(s)	582
Kzo9I	GATC	3 cut(s)	259, 284, 418
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	2 cut(s)	467, 544
LweI	GCATC	2 cut(s)	819, 1189
MaeI	CTAG	4 cut(s)	459, 552, 867, 1029
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	923
MalI	GATC	3 cut(s)	261, 286, 420
MbiI	CCGCTC	1 cut(s)	660
MboI	GATC	3 cut(s)	259, 284, 418
MfeI	CAATTG	2 cut(s)	568, 1167
MflI	RGATCY	2 cut(s)	259, 284
MhlI	GDGCHC	1 cut(s)	522
MlyI	GAGTC	2 cut(s)	155, 1142
MmeI	TCCRAC	1 cut(s)	237
MroI	TCCGGA	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	3 cut(s)	39, 594, 983
MslI	CAYNNNNRTG	2 cut(s)	827, 1071
MspA1I	CMGCKG	3 cut(s)	94, 480, 731
MspCI	CTTAAG	1 cut(s)	38
MspI	CCGG	3 cut(s)	279, 545, 663
MspR9I	CCNGG	2 cut(s)	583, 965
MunI	CAATTG	2 cut(s)	568, 1167
Mva1269I	GAATGC	2 cut(s)	652, 853
MvaI	CCWGG	2 cut(s)	583, 965
MwoI	GCNNNNNNNGC	3 cut(s)	557, 770, 1114
NdeII	GATC	3 cut(s)	259, 284, 418
NlaIII	CATG	4 cut(s)	428, 671, 1133, 1185
NlaIV	GGNNCC	6 cut(s)	261, 580, 872, 969, 1022, 1235
NmuCI	GTSAC	1 cut(s)	923
NspI	RCATGY	1 cut(s)	1185
NspV	TTCGAA	1 cut(s)	49
PagI	TCATGA	1 cut(s)	667
PceI	AGGCCT	1 cut(s)	963
PciI	ACATGT	1 cut(s)	1181
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PctI	GAATGC	2 cut(s)	652, 853
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	51, 671
PkrI	GCNGC	2 cut(s)	482, 559
PleI	GAGTC	2 cut(s)	155, 1142
PpsI	GAGTC	2 cut(s)	155, 1142
PscI	ACATGT	1 cut(s)	1181
Psp6I	CCWGG	2 cut(s)	581, 963
PspFI	CCCAGC	1 cut(s)	936
PspGI	CCWGG	2 cut(s)	581, 963
PspN4I	GGNNCC	6 cut(s)	261, 580, 872, 969, 1022, 1235
PspPI	GGNCC	5 cut(s)	189, 967, 1020, 1079, 1234
PsuI	RGATCY	2 cut(s)	259, 284
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	5 cut(s)	28, 394, 580, 604, 750
RsaNI	GTAC	5 cut(s)	27, 393, 579, 603, 749
RseI	CAYNNNNRTG	2 cut(s)	827, 1071
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	39, 594, 983
SatI	GCNGC	2 cut(s)	481, 558
Sau3AI	GATC	3 cut(s)	259, 284, 418
Sau96I	GGNCC	5 cut(s)	189, 967, 1020, 1079, 1234
SchI	GAGTC	2 cut(s)	155, 1142
ScrFI	CCNGG	2 cut(s)	583, 965
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	2 cut(s)	819, 1189
SfcI	CTRYAG	1 cut(s)	991
SfuI	TTCGAA	1 cut(s)	49
SinI	GGWCC	2 cut(s)	1079, 1234
SmiMI	CAYNNNNRTG	2 cut(s)	827, 1071
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SpeI	ACTAGT	1 cut(s)	1028
SseBI	AGGCCT	1 cut(s)	963
SsiI	CCGC	4 cut(s)	478, 658, 729, 902
SspMI	CTAG	4 cut(s)	459, 552, 867, 1029
StuI	AGGCCT	1 cut(s)	963
StyD4I	CCNGG	2 cut(s)	581, 963
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	3 cut(s)	680, 908, 992
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	5 cut(s)	49, 370, 415, 648, 896
TatI	WGTACW	2 cut(s)	602, 748
TfiI	GAWTC	2 cut(s)	51, 671
Tru1I	TTAA	3 cut(s)	39, 594, 983
Tru9I	TTAA	3 cut(s)	39, 594, 983
TscAI	CASTG	2 cut(s)	66, 1210
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	2 cut(s)	480, 557
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	6 cut(s)	93, 162, 356, 684, 933, 1118
TspRI	CASTG	2 cut(s)	66, 1210
Vha464I	CTTAAG	1 cut(s)	38
VpaK11BI	GGWCC	2 cut(s)	1079, 1234
XapI	RAATTY	4 cut(s)	268, 1094, 1223, 1239
XbaI	TCTAGA	1 cut(s)	458
XceI	RCATGY	1 cut(s)	1185
XcmI	CCANNNNNNNNNTGG	2 cut(s)	881, 1073
XmiI	GTMKAC	2 cut(s)	735, 1178
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	4 cut(s)	459, 552, 867, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.