Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006175

Physical Location & Seq

Genomic Coordinates Forward (+)

17659462 .. 17663867

Gene Structure 4406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG168000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAGGGTGGTCTGAGAGGTGACGGAACAGAAGAGCTTAAGGGTCTTCGAATCACCTCACTGGATGATGAGAGTGATGAAGAAGAACTACAACAGAAAGAAGAAATTGTTGTAGATGATGAGGAGGAGGAAGAGGAAGAAGATGAAGAAGCAAGAGATTCTGTGGTTTTAGGTTTTGTGAAAAGGCCCAAGAAAGCCAGCTCTCTTCTACGCCATTTCTTCCCTTCAAAGGCTGGAGGAGTTCCTGCTTGGTTGGATCCAGAAAATTTGCCATCCGGAAGATCTTGTCTTTGTGACCTATGCGGTGAACCTTTGCAATTTATGCTTCAGGTGTATGCACCAGAGGAGAAGCCATCCACATTTCATCGAACATTGTTTGTTTTTATGTGTACGTCAATGGCGTGTCTTCGTCGAGATCAACATGAGCAATGGAAATGCCATCGGGACAACCCTTCTAGAAGTGTGAAGGTTTTCCGCTGCCAATTACCTCGTGATAATCCTTTCTACCCAAGTGAGCCCCCAAAGAAGGGTACTGAGCCTCCATTGGCTAGAGCTGCACTCTGCAATTGGTGTGGTACCTGGAAAGGGATTAAATGCTGTACTGGTTGCAGACAAACACTTTATTGCTCAGAGAAACATTGGGTCAAGCATTCCCGCTCCGGTCATGAATCTGACTGTCAGCGTATGAGGATAAGTTCTCAGTTGGTTGAAGGTAGCTCTGCTACCGCTGAAAACCCTTCTTCTGTAGTCCAGAAAGTTGCAAGCAAAGCTTTATGGCCTGAATACAAGATCATACAGGAGTTTGAAAGTGCTTATGACACACAGATGCCTGATGATAATGTGAATGCTAACTCCATGGTCTCTAGGAACCAGATGGACGATGGATTGATGTCGATAGCAGACAATTTCGCGGTACTAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD2_C zf-MYND

Protein Analysis

307

Amino Acids

34.78

Weight (kDa)

4.99

Isoelectric Point (pI)

69.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02220
fragaria_vesca	FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570
malus_domestica	MD05G1235200.v1.1 MD10G1211200.v1.1
prunus_persica	Prupe.4G131100_v2.0.a1
pyrus_communis	pycom05g21210
rosa_chinensis	RchiOBHm_Chr5g0024021
rosa_laevigata	RLG00000032755
rosa_multiflora	Rmu_sc0005837.1_g000013 Rmu_sc0011761.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055220
rosa_rugosa	Rorug05G0080800 Rorug05G0080900 Rorug05G0081000
rosa_samantha	Rh5AG171300 Rh5BG168000 Rh5CG183500 Rh5DG170000
rosa_wichuraiana	Rw5G015500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	575
AccB1I	GGYRCC	1 cut(s)	575
AccBSI	CCGCTC	1 cut(s)	657
AccII	CGCG	1 cut(s)	911
AccIII	TCCGGA	1 cut(s)	275
AciI	CCGC	5 cut(s)	303, 475, 655, 726, 911
AclWI	GGATC	2 cut(s)	251, 264
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	5 cut(s)	391, 532, 577, 601, 915
AfiI	CCNNNNNNNGG	4 cut(s)	229, 526, 527, 585
AflII	CTTAAG	1 cut(s)	38
AgsI	TTSAA	3 cut(s)	228, 710, 806
AjnI	CCWGG	1 cut(s)	578
AluBI	AGCT	5 cut(s)	37, 201, 554, 717, 770
AluI	AGCT	5 cut(s)	37, 201, 554, 717, 770
Alw26I	GTCTC	1 cut(s)	865
AlwI	GGATC	2 cut(s)	251, 264
Aor13HI	TCCGGA	1 cut(s)	275
AoxI	GGCC	2 cut(s)	185, 776
ApeKI	GCWGC	2 cut(s)	477, 554
ApoI	RAATTY	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	470
Asp718I	GGTACC	1 cut(s)	575
AspS9I	GGNCC	1 cut(s)	186
AsuHPI	GGTGA	3 cut(s)	32, 46, 317
AsuII	TTCGAA	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	519
BarI	GAAGNNNNNNTAC	2 cut(s)	72, 104
BauI	CACGAG	1 cut(s)	489
BbsI	GAAGAC	2 cut(s)	38, 398
BbvI	GCAGC	2 cut(s)	464, 541
BccI	CCATC	5 cut(s)	280, 361, 447, 868, 875
BciT130I	CCWGG	1 cut(s)	580
BcoDI	GTCTC	1 cut(s)	865
BfaI	CTAG	4 cut(s)	456, 549, 864, 917
BfmI	CTRYAG	1 cut(s)	744
BfrI	CTTAAG	1 cut(s)	38
BglII	AGATCT	1 cut(s)	281
BisI	GCNGC	2 cut(s)	478, 555
BlsI	GCNGC	2 cut(s)	479, 556
Bme1390I	CCNGG	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	3 cut(s)	258, 577, 869
BmrFI	CCNGG	1 cut(s)	580
BmsI	GCATC	1 cut(s)	816
BpiI	GAAGAC	2 cut(s)	38, 398
BplI	GAGNNNNNCTC	2 cut(s)	543, 575
BpmI	CTGGAG	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	865
BsaJI	CCNNGG	1 cut(s)	855
BsaWI	WCCGGW	2 cut(s)	275, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	523, 553
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 526, 527, 585
Bse1I	ACTGG	2 cut(s)	66, 607
Bse3DI	GCAATG	1 cut(s)	434
BseAI	TCCGGA	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	580
BseDI	CCNNGG	1 cut(s)	855
BseGI	GGATG	3 cut(s)	70, 272, 353
BseLI	CCNNNNNNNGG	4 cut(s)	229, 526, 527, 585
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	4 cut(s)	5, 525, 642, 713
BseNI	ACTGG	2 cut(s)	66, 607
BseRI	GAGGAG	4 cut(s)	137, 140, 252, 359
BseXI	GCAGC	2 cut(s)	464, 541
BsgI	GTGCAG	1 cut(s)	540
Bsh1236I	CGCG	1 cut(s)	911
BshFI	GGCC	2 cut(s)	187, 778
BshNI	GGYRCC	1 cut(s)	575
BsiSI	CCGG	2 cut(s)	276, 660
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	4 cut(s)	229, 526, 527, 585
BsmAI	GTCTC	1 cut(s)	865
BsmFI	GGGAC	1 cut(s)	458
BsmI	GAATGC	2 cut(s)	649, 850
BsnI	GGCC	2 cut(s)	187, 778
Bso31I	GGTCTC	1 cut(s)	865
Bsp119I	TTCGAA	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp13I	TCCGGA	1 cut(s)	275
Bsp143I	GATC	4 cut(s)	256, 281, 415, 789
Bsp19I	CCATGG	1 cut(s)	855
BspACI	CCGC	5 cut(s)	303, 475, 655, 726, 911
BspANI	GGCC	2 cut(s)	187, 778
BspCNI	CTCAG	4 cut(s)	6, 526, 641, 712
BspEI	TCCGGA	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	911
BspHI	TCATGA	1 cut(s)	664
BspLI	GGNNCC	3 cut(s)	258, 577, 869
BspPI	GGATC	2 cut(s)	251, 264
BspQI	GCTCTTC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	575
BspTI	CTTAAG	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	865
BsrBI	CCGCTC	1 cut(s)	657
BsrDI	GCAATG	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	66, 607
BssECI	CCNNGG	1 cut(s)	855
BssMI	GATC	4 cut(s)	256, 281, 415, 789
BssSI	CACGAG	1 cut(s)	489
BssT1I	CCWWGG	1 cut(s)	855
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	1 cut(s)	677
Bst6I	CTCTTC	3 cut(s)	27, 126, 210
BstAFI	CTTAAG	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstBI	TTCGAA	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	199, 763
BstDEI	CTNAG	4 cut(s)	14, 534, 628, 699
BstDSI	CCRYGG	1 cut(s)	855
BstF5I	GGATG	3 cut(s)	70, 272, 353
BstFNI	CGCG	1 cut(s)	911
BstKTI	GATC	4 cut(s)	259, 284, 418, 792
BstMAI	GTCTC	1 cut(s)	865
BstMBI	GATC	4 cut(s)	256, 281, 415, 789
BstMWI	GCNNNNNNNGC	3 cut(s)	322, 554, 767
BstNI	CCWGG	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	578
BstSFI	CTRYAG	1 cut(s)	744
BstUI	CGCG	1 cut(s)	911
BstV1I	GCAGC	2 cut(s)	464, 541
BstV2I	GAAGAC	2 cut(s)	38, 398
BstX2I	RGATCY	2 cut(s)	256, 281
BstYI	RGATCY	2 cut(s)	256, 281
BsuRI	GGCC	2 cut(s)	187, 778
BtgI	CCRYGG	1 cut(s)	855
BtsCI	GGATG	3 cut(s)	70, 272, 353
BtsIMutI	CAGTG	1 cut(s)	59
Cac8I	GCNNGC	2 cut(s)	199, 763
CciI	TCATGA	1 cut(s)	664
Cfr13I	GGNCC	1 cut(s)	186
Csp6I	GTAC	5 cut(s)	390, 531, 576, 600, 914
CspCI	CAANNNNNGTGG	2 cut(s)	553, 588
CviAII	CATG	3 cut(s)	422, 665, 856
CviQI	GTAC	5 cut(s)	390, 531, 576, 600, 914
DdeI	CTNAG	4 cut(s)	14, 534, 628, 699
DpnI	GATC	4 cut(s)	258, 283, 417, 791
DpnII	GATC	4 cut(s)	256, 281, 415, 789
Eam1104I	CTCTTC	3 cut(s)	27, 126, 210
EarI	CTCTTC	3 cut(s)	27, 126, 210
Eco130I	CCWWGG	1 cut(s)	855
Eco24I	GRGCYC	1 cut(s)	519
Eco31I	GGTCTC	1 cut(s)	865
Eco57I	CTGAAG	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	578
EcoT14I	CCWWGG	1 cut(s)	855
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	855
FaeI	CATG	3 cut(s)	425, 668, 859
FalI	AAGNNNNNCTT	2 cut(s)	754, 786
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	3 cut(s)	421, 664, 855
FauI	CCCGC	1 cut(s)	662
Fnu4HI	GCNGC	2 cut(s)	478, 555
FokI	GGATG	3 cut(s)	77, 259, 340
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	2 cut(s)	478, 555
FspBI	CTAG	4 cut(s)	456, 549, 864, 917
GluI	GCNGC	2 cut(s)	478, 555
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	187, 778
HapII	CCGG	2 cut(s)	276, 660
Hin1II	CATG	3 cut(s)	425, 668, 859
HindIII	AAGCTT	1 cut(s)	768
HinfI	GANTC	3 cut(s)	51, 158, 668
HpaII	CCGG	2 cut(s)	276, 660
HphI	GGTGA	3 cut(s)	32, 46, 317
Hpy166II	GTNNAC	2 cut(s)	308, 390
Hpy188I	TCNGA	3 cut(s)	15, 631, 673
Hpy188III	TCNNGA	8 cut(s)	260, 276, 413, 443, 456, 491, 665, 751
Hpy8I	GTNNAC	2 cut(s)	308, 390
Hpy99I	CGWCG	1 cut(s)	414
HpyAV	CCTTC	6 cut(s)	234, 460, 462, 520, 704, 747
HpyCH4III	ACNGT	1 cut(s)	677
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	6 cut(s)	316, 338, 557, 564, 609, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	322, 554, 767
HpyF3I	CTNAG	4 cut(s)	14, 534, 628, 699
HpySE526I	ACGT	1 cut(s)	392
Hsp92II	CATG	3 cut(s)	425, 668, 859
Kpn2I	TCCGGA	1 cut(s)	275
KpnI	GGTACC	1 cut(s)	579
Kzo9I	GATC	4 cut(s)	256, 281, 415, 789
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	662
Lsp1109I	GCAGC	2 cut(s)	464, 541
LweI	GCATC	1 cut(s)	816
MaeI	CTAG	4 cut(s)	456, 549, 864, 917
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	20, 293
MalI	GATC	4 cut(s)	258, 283, 417, 791
MbiI	CCGCTC	1 cut(s)	657
MboI	GATC	4 cut(s)	256, 281, 415, 789
MfeI	CAATTG	1 cut(s)	565
MflI	RGATCY	2 cut(s)	256, 281
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	6 cut(s)	105, 265, 317, 482, 565, 904
MmeI	TCCRAC	1 cut(s)	234
MroI	TCCGGA	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	470
MseI	TTAA	3 cut(s)	39, 591, 922
MslI	CAYNNNNRTG	1 cut(s)	824
MspA1I	CMGCKG	2 cut(s)	477, 728
MspCI	CTTAAG	1 cut(s)	38
MspI	CCGG	2 cut(s)	276, 660
MspR9I	CCNGG	1 cut(s)	580
MunI	CAATTG	1 cut(s)	565
Mva1269I	GAATGC	2 cut(s)	649, 850
MvaI	CCWGG	1 cut(s)	580
MvnI	CGCG	1 cut(s)	911
MwoI	GCNNNNNNNGC	3 cut(s)	322, 554, 767
NcoI	CCATGG	1 cut(s)	855
NdeII	GATC	4 cut(s)	256, 281, 415, 789
NlaIII	CATG	3 cut(s)	425, 668, 859
NlaIV	GGNNCC	3 cut(s)	258, 577, 869
NmuCI	GTSAC	2 cut(s)	20, 293
NspV	TTCGAA	1 cut(s)	49
PagI	TCATGA	1 cut(s)	664
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	398
PctI	GAATGC	2 cut(s)	649, 850
PdmI	GAANNNNTTC	1 cut(s)	470
PfeI	GAWTC	3 cut(s)	51, 158, 668
PkrI	GCNGC	2 cut(s)	479, 556
Psp6I	CCWGG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	578
PspN4I	GGNNCC	3 cut(s)	258, 577, 869
PspPI	GGNCC	1 cut(s)	186
PsuI	RGATCY	2 cut(s)	256, 281
RsaI	GTAC	5 cut(s)	391, 532, 577, 601, 915
RsaNI	GTAC	5 cut(s)	390, 531, 576, 600, 914
RseI	CAYNNNNRTG	1 cut(s)	824
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	39, 591, 922
SatI	GCNGC	2 cut(s)	478, 555
Sau3AI	GATC	4 cut(s)	256, 281, 415, 789
Sau96I	GGNCC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	580
SduI	GDGCHC	1 cut(s)	519
SfaNI	GCATC	1 cut(s)	816
SfcI	CTRYAG	1 cut(s)	744
SfuI	TTCGAA	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	824
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	6 cut(s)	105, 265, 317, 482, 565, 904
SsiI	CCGC	5 cut(s)	303, 475, 655, 726, 911
SspMI	CTAG	4 cut(s)	456, 549, 864, 917
StyD4I	CCNGG	1 cut(s)	578
StyI	CCWWGG	1 cut(s)	855
TaaI	ACNGT	1 cut(s)	677
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	4 cut(s)	49, 367, 412, 893
TasI	AATT	6 cut(s)	105, 265, 317, 482, 565, 904
TatI	WGTACW	1 cut(s)	599
TfiI	GAWTC	3 cut(s)	51, 158, 668
Tru1I	TTAA	3 cut(s)	39, 591, 922
Tru9I	TTAA	3 cut(s)	39, 591, 922
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	2 cut(s)	20, 293
TseI	GCWGC	2 cut(s)	477, 554
Tsp45I	GTSAC	2 cut(s)	20, 293
TspDTI	ATGAA	4 cut(s)	93, 159, 353, 681
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	66
Vha464I	CTTAAG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	265
XbaI	TCTAGA	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	878
XmnI	GAANNNNTTC	1 cut(s)	470
XspI	CTAG	4 cut(s)	456, 549, 864, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.