pycom05g21210

Programmed cell death protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
23889427 .. 23891722
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g21210.8

Sequence Viewer

Length: 1242 bp
ATGGCTGGTACTCTGAAAGGTGATGGTACGGAAGAGTTTAAGGGTCTTAGAATCACATCACTGGACGATGATAGTGACCAAGAAGAAGAACAAAAGGAGCAAGATATTGCTATGGATGACGATGACGAAGAAGAAGAAGATGAAGAAGCAAGAAATTCGGTGATTTTGGGTTTTGTGAAAAACCCCAAGAGAGCCCGGTCTCTTCTTCGTCATTTCTTTCCTTCCAAGGCTGGAGGAGTTCCTGCTTGGCTGGATCCAGAAAATTTGCCATCGGGGAGATCGTTTTTTTGCGACATATGTGGCGAACCTTTGCAATTTGTGCTTCAGGTATATGCTCCGGAGGAGAAGGAATCTGCTTTTCATCGAACATTGTTTGTCTTTATGTGTACGTCAATGGCGTGTCTTCGCCGTGACCAACACGAGCAATGGAAATGCCAGCGGGATAAGCCCTCTAGAAGCGTGAAGGTTTTTCGTTGCCAATTACCCTGCGATAATCCTTTCTACTCAAGCGAGCCTCCAAAGAAGGATAGTACGGACGACCCTCTTAAGGCTGGAGCTGCACTCTGTAGTTGGTGTGGTACCTGGAAGGGGAGTAAACGCTGTACTGGTTGCAGAAAAGCACTTTATTGCTCAGAGAAACATTGGATCAAGCATTCTCGGTCTGGTCATGAACATGATTGTCAACGATTGAGGATTCAGCTGGGTGACAGTAGCTCTGCTAACAGTGAATCCACTTCTACTGTAATTCCAAAAGTTGCAAGCAATAATTTATGGCCAGAATACAAAATTATACAGGAGCCTGAAAGTTCGTATGACACGGAAATGCCTAATGATGATGTGGGCACTAATTCTTTGATCTATAGTAACCAGATGGATGACGGCCTAATGTCAATAGCAGACAATTTTACGGGTGATGGTGACAGAAAGAGCTGGGCTTCGTTCCATGTGCGCATAGCCCTTGCCCCTGAACAAGTACTAAGGTACTGTAGGAGTCCGGGTGCTAATCCCTTATGGCCCGTGTCAAGTGGCCGGCCATCCACGGCTGATATTCCTAAATGCAGTTATTGTAGTGGCCCAATGTGTTTTGAATTTCAGATTATGCCTCAGTTGCTATTTTACTTTAACGTGAAGAATGATGTGGACTCGCTTGATTGGGCTACGATCGATGTGTATACATGTGAAGCCTCCTGTGATGCAAGTGTGGTTTACAAAGAAGAATTCGCTTGGGTTCAACTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

414

Amino Acids

46.7

Weight (kDa)

4.89

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 950
Acc65I GGTACC 1 cut(s) 578
AccB1I GGYRCC 1 cut(s) 578
AccI GTMKAC 1 cut(s) 1172
AccIII TCCGGA 1 cut(s) 337
AciI CCGC 1 cut(s) 439
AclWI GGATC 3 cut(s) 248, 261, 653
AcoI YGGCCR 3 cut(s) 773, 1027, 1031
AcsI RAATTY 4 cut(s) 154, 262, 1088, 1217
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 8 cut(s) 10, 28, 388, 532, 580, 604, 975, 983
AfiI CCNNNNNNNGG 2 cut(s) 547, 588
AflII CTTAAG 1 cut(s) 545
AflIII ACRYGT 1 cut(s) 1175
AgsI TTSAA 2 cut(s) 1088, 1232
AjnI CCWGG 1 cut(s) 581
AluBI AGCT 4 cut(s) 557, 700, 714, 930
AluI AGCT 4 cut(s) 557, 700, 714, 930
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 3 cut(s) 248, 261, 653
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 6 cut(s) 773, 880, 1013, 1027, 1031, 1072
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 4 cut(s) 154, 262, 1088, 1217
Asp718I GGTACC 1 cut(s) 578
AspLEI GCGC 1 cut(s) 951
AspS9I GGNCC 2 cut(s) 1014, 1073
AsuC2I CCSGG 2 cut(s) 196, 996
AsuHPI GGTGA 5 cut(s) 32, 172, 716, 923, 929
BaeGI GKGCMC 1 cut(s) 845
BalI TGGCCA 1 cut(s) 775
BamHI GGATCC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 578
BanII GRGCYC 1 cut(s) 196
BauI CACGAG 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 395
BbvI GCAGC 1 cut(s) 544
BccI CCATC 5 cut(s) 17, 277, 865, 908, 1042
BceAI ACGGC 3 cut(s) 393, 895, 1056
BcgI CGANNNNNNTGC 2 cut(s) 138, 172
BciT130I CCWGG 1 cut(s) 583
BcnI CCSGG 2 cut(s) 196, 996
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 1 cut(s) 453
BfmI CTRYAG 3 cut(s) 565, 859, 985
BfrI CTTAAG 1 cut(s) 545
BisI GCNGC 1 cut(s) 558
BlsI GCNGC 1 cut(s) 559
BmcAI AGTACT 1 cut(s) 975
Bme1390I CCNGG 3 cut(s) 196, 583, 996
BmgT120I GGNCC 2 cut(s) 1014, 1073
BmiI GGNNCC 3 cut(s) 255, 580, 798
BmrFI CCNGG 3 cut(s) 196, 583, 996
BmsI GCATC 1 cut(s) 1183
BpiI GAAGAC 1 cut(s) 395
BplI GAGNNNNNCTC 2 cut(s) 546, 578
BpmI CTGGAG 2 cut(s) 252, 573
BpuEI CTTGAG 1 cut(s) 490
BpuMI CCSGG 2 cut(s) 196, 996
Bsa29I ATCGAT 1 cut(s) 1164
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 225, 1038
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 2 cut(s) 982, 1012
Bsc4I CCNNNNNNNGG 2 cut(s) 547, 588
Bse118I RCCGGY 1 cut(s) 1029
Bse1I ACTGG 2 cut(s) 66, 610
Bse3DI GCAATG 1 cut(s) 431
BseAI TCCGGA 1 cut(s) 337
BseBI CCWGG 1 cut(s) 583
BseCI ATCGAT 1 cut(s) 1164
BseDI CCNNGG 2 cut(s) 225, 1038
BseGI GGATG 3 cut(s) 121, 880, 1034
BseLI CCNNNNNNNGG 2 cut(s) 547, 588
BseMI GCAATG 1 cut(s) 431
BseMII CTCAG 2 cut(s) 645, 1118
BseNI ACTGG 2 cut(s) 66, 610
BseRI GAGGAG 2 cut(s) 249, 356
BseSI GKGCMC 1 cut(s) 845
BseXI GCAGC 1 cut(s) 544
BseYI CCCAGC 2 cut(s) 700, 930
BsgI GTGCAG 1 cut(s) 543
Bsh1285I CGRYCG 1 cut(s) 1164
BshFI GGCC 6 cut(s) 775, 882, 1015, 1029, 1033, 1074
BshNI GGYRCC 1 cut(s) 578
BshVI ATCGAT 1 cut(s) 1164
BsiEI CGRYCG 1 cut(s) 1164
BsiSI CCGG 4 cut(s) 196, 338, 995, 1030
BslI CCNNNNNNNGG 2 cut(s) 547, 588
BsmAI GTCTC 1 cut(s) 204
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 6 cut(s) 775, 882, 1015, 1029, 1033, 1074
Bso31I GGTCTC 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 196, 845
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 5 cut(s) 253, 278, 645, 855, 1161
BspACI CCGC 1 cut(s) 439
BspANI GGCC 6 cut(s) 775, 882, 1015, 1029, 1033, 1074
BspCNI CTCAG 2 cut(s) 644, 1117
BspDI ATCGAT 1 cut(s) 1164
BspEI TCCGGA 1 cut(s) 337
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 3 cut(s) 255, 580, 798
BspPI GGATC 3 cut(s) 248, 261, 653
BspT107I GGYRCC 1 cut(s) 578
BspTI CTTAAG 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 431
BsrFI RCCGGY 1 cut(s) 1029
BsrI ACTGG 2 cut(s) 66, 610
BssAI RCCGGY 1 cut(s) 1029
BssECI CCNNGG 2 cut(s) 225, 1038
BssMI GATC 5 cut(s) 253, 278, 645, 855, 1161
BssNAI GTATAC 1 cut(s) 1173
BssSI CACGAG 1 cut(s) 419
BssT1I CCWWGG 1 cut(s) 225
Bst1107I GTATAC 1 cut(s) 1173
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 583
Bst4CI ACNGT 4 cut(s) 710, 725, 742, 986
Bst6I CTCTTC 2 cut(s) 27, 207
BstAFI CTTAAG 1 cut(s) 545
BstAPI GCANNNNNTGC 1 cut(s) 319
BstC8I GCNNGC 4 cut(s) 437, 512, 760, 1031
BstDEI CTNAG 5 cut(s) 47, 631, 977, 1104, 1239
BstDSI CCRYGG 1 cut(s) 1038
BstF5I GGATG 3 cut(s) 121, 880, 1034
BstHHI GCGC 1 cut(s) 951
BstKTI GATC 5 cut(s) 256, 281, 648, 858, 1164
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 5 cut(s) 253, 278, 645, 855, 1161
BstMCI CGRYCG 1 cut(s) 1164
BstMWI GCNNNNNNNGC 4 cut(s) 319, 445, 557, 1108
BstNI CCWGG 1 cut(s) 583
BstNSI RCATGY 1 cut(s) 1179
BstSCI CCNGG 3 cut(s) 194, 581, 994
BstSFI CTRYAG 3 cut(s) 565, 859, 985
BstSLI GKGCMC 1 cut(s) 845
BstV1I GCAGC 1 cut(s) 544
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BstZ17I GTATAC 1 cut(s) 1173
Bsu15I ATCGAT 1 cut(s) 1164
BsuRI GGCC 6 cut(s) 775, 882, 1015, 1029, 1033, 1074
BsuTUI ATCGAT 1 cut(s) 1164
BtgI CCRYGG 1 cut(s) 1038
BtsCI GGATG 3 cut(s) 121, 880, 1034
BtsIMutI CAGTG 2 cut(s) 59, 730
Cac8I GCNNGC 4 cut(s) 437, 512, 760, 1031
CciI TCATGA 1 cut(s) 667
CfoI GCGC 1 cut(s) 951
Cfr10I RCCGGY 1 cut(s) 1029
Cfr13I GGNCC 2 cut(s) 1014, 1073
ClaI ATCGAT 1 cut(s) 1164
Csp6I GTAC 8 cut(s) 9, 27, 387, 531, 579, 603, 974, 982
CviAII CATG 4 cut(s) 668, 674, 944, 1176
CviQI GTAC 8 cut(s) 9, 27, 387, 531, 579, 603, 974, 982
DdeI CTNAG 5 cut(s) 47, 631, 977, 1104, 1239
DpnI GATC 5 cut(s) 255, 280, 647, 857, 1163
DpnII GATC 5 cut(s) 253, 278, 645, 855, 1161
EaeI YGGCCR 3 cut(s) 773, 1027, 1031
Eam1104I CTCTTC 2 cut(s) 27, 207
EarI CTCTTC 2 cut(s) 27, 207
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 196
Eco31I GGTCTC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 1217
EcoRII CCWGG 1 cut(s) 581
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 4 cut(s) 671, 677, 947, 1179
FatI CATG 4 cut(s) 667, 673, 943, 1175
FauI CCCGC 1 cut(s) 432
FauNDI CATATG 1 cut(s) 296
FblI GTMKAC 1 cut(s) 1172
Fnu4HI GCNGC 1 cut(s) 558
FokI GGATG 3 cut(s) 128, 887, 1021
FriOI GRGCYC 1 cut(s) 196
FseI GGCCGGCC 1 cut(s) 1033
Fsp4HI GCNGC 1 cut(s) 558
FspAI RTGCGCAY 1 cut(s) 950
FspBI CTAG 1 cut(s) 453
FspI TGCGCA 1 cut(s) 950
GlaI GCGC 1 cut(s) 950
GluI GCNGC 1 cut(s) 558
GsaI CCCAGC 2 cut(s) 704, 934
GsuI CTGGAG 2 cut(s) 252, 573
HaeIII GGCC 6 cut(s) 775, 882, 1015, 1029, 1033, 1074
HapII CCGG 4 cut(s) 196, 338, 995, 1030
HhaI GCGC 1 cut(s) 951
Hin1II CATG 4 cut(s) 671, 677, 947, 1179
Hin6I GCGC 1 cut(s) 949
HinP1I GCGC 1 cut(s) 949
HincII GTYRAC 1 cut(s) 683
HindII GTYRAC 1 cut(s) 683
HinfI GANTC 6 cut(s) 51, 350, 694, 728, 991, 1142
HpaII CCGG 4 cut(s) 196, 338, 995, 1030
HphI GGTGA 5 cut(s) 32, 172, 716, 923, 929
Hpy166II GTNNAC 6 cut(s) 387, 596, 683, 1141, 1173, 1207
Hpy188I TCNGA 3 cut(s) 15, 634, 1095
Hpy188III TCNNGA 4 cut(s) 257, 338, 453, 668
Hpy8I GTNNAC 6 cut(s) 387, 596, 683, 1141, 1173, 1207
HpyAV CCTTC 5 cut(s) 231, 340, 457, 517, 580
HpyCH4III ACNGT 4 cut(s) 710, 725, 742, 986
HpyCH4IV ACGT 2 cut(s) 389, 1125
HpyCH4V TGCA 6 cut(s) 313, 560, 612, 758, 1059, 1196
HpyF10VI GCNNNNNNNGC 4 cut(s) 319, 445, 557, 1108
HpyF3I CTNAG 5 cut(s) 47, 631, 977, 1104, 1239
HpySE526I ACGT 2 cut(s) 389, 1125
Hsp92II CATG 4 cut(s) 671, 677, 947, 1179
HspAI GCGC 1 cut(s) 949
Kpn2I TCCGGA 1 cut(s) 337
KpnI GGTACC 1 cut(s) 582
KroI GCCGGC 1 cut(s) 1029
KroNI GCCGGC 1 cut(s) 1031
Kzo9I GATC 5 cut(s) 253, 278, 645, 855, 1161
LmnI GCTCC 4 cut(s) 97, 340, 554, 796
Lsp1109I GCAGC 1 cut(s) 544
LweI GCATC 1 cut(s) 1183
MaeI CTAG 1 cut(s) 453
MaeII ACGT 2 cut(s) 389, 1125
MaeIII GTNAC 5 cut(s) 74, 410, 704, 863, 917
MalI GATC 5 cut(s) 255, 280, 647, 857, 1163
MboI GATC 5 cut(s) 253, 278, 645, 855, 1161
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 2 cut(s) 196, 845
MlsI TGGCCA 1 cut(s) 775
MluNI TGGCCA 1 cut(s) 775
MlyI GAGTC 2 cut(s) 1000, 1136
MnlI CCTC 8 cut(s) 227, 334, 460, 525, 552, 684, 1113, 1195
Mox20I TGGCCA 1 cut(s) 775
MroI TCCGGA 1 cut(s) 337
MroNI GCCGGC 1 cut(s) 1029
MscI TGGCCA 1 cut(s) 775
MseI TTAA 3 cut(s) 39, 546, 1122
MslI CAYNNNNRTG 2 cut(s) 672, 821
Msp20I TGGCCA 1 cut(s) 775
MspA1I CMGCKG 2 cut(s) 439, 700
MspCI CTTAAG 1 cut(s) 545
MspI CCGG 4 cut(s) 196, 338, 995, 1030
MspR9I CCNGG 3 cut(s) 196, 583, 996
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 1 cut(s) 583
MwoI GCNNNNNNNGC 4 cut(s) 319, 445, 557, 1108
NaeI GCCGGC 1 cut(s) 1031
NciI CCSGG 2 cut(s) 196, 996
NdeI CATATG 1 cut(s) 296
NdeII GATC 5 cut(s) 253, 278, 645, 855, 1161
NgoMIV GCCGGC 1 cut(s) 1029
NlaIII CATG 4 cut(s) 671, 677, 947, 1179
NlaIV GGNNCC 3 cut(s) 255, 580, 798
NmuCI GTSAC 4 cut(s) 74, 410, 704, 917
NsbI TGCGCA 1 cut(s) 950
NspI RCATGY 1 cut(s) 1179
PagI TCATGA 1 cut(s) 667
PciI ACATGT 1 cut(s) 1175
PcsI WCGNNNNNNNCGW 2 cut(s) 278, 395
PctI GAATGC 1 cut(s) 652
PdiI GCCGGC 1 cut(s) 1031
PfeI GAWTC 4 cut(s) 51, 350, 694, 728
PkrI GCNGC 1 cut(s) 559
Ple19I CGATCG 1 cut(s) 1164
PleI GAGTC 2 cut(s) 999, 1136
PpsI GAGTC 2 cut(s) 999, 1136
PscI ACATGT 1 cut(s) 1175
Psp6I CCWGG 1 cut(s) 581
PspFI CCCAGC 2 cut(s) 700, 930
PspGI CCWGG 1 cut(s) 581
PspN4I GGNNCC 3 cut(s) 255, 580, 798
PspPI GGNCC 2 cut(s) 1014, 1073
PsuI RGATCY 1 cut(s) 253
PvuI CGATCG 1 cut(s) 1164
PvuII CAGCTG 1 cut(s) 700
RigI GGCCGGCC 1 cut(s) 1033
RsaI GTAC 8 cut(s) 10, 28, 388, 532, 580, 604, 975, 983
RsaNI GTAC 8 cut(s) 9, 27, 387, 531, 579, 603, 974, 982
RseI CAYNNNNRTG 2 cut(s) 672, 821
SaqAI TTAA 3 cut(s) 39, 546, 1122
SatI GCNGC 1 cut(s) 558
Sau3AI GATC 5 cut(s) 253, 278, 645, 855, 1161
Sau96I GGNCC 2 cut(s) 1014, 1073
ScaI AGTACT 1 cut(s) 975
SchI GAGTC 2 cut(s) 1000, 1136
ScrFI CCNGG 3 cut(s) 196, 583, 996
SduI GDGCHC 2 cut(s) 196, 845
SfaNI GCATC 1 cut(s) 1183
SfcI CTRYAG 3 cut(s) 565, 859, 985
SmiMI CAYNNNNRTG 2 cut(s) 672, 821
SmlI CTYRAG 2 cut(s) 505, 545
SmoI CTYRAG 2 cut(s) 505, 545
SsiI CCGC 1 cut(s) 439
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 3 cut(s) 194, 581, 994
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 4 cut(s) 710, 725, 742, 986
TaiI ACGT 2 cut(s) 392, 1128
TaqI TCGA 2 cut(s) 364, 1164
TaqII GACCGA 1 cut(s) 648
TatI WGTACW 2 cut(s) 602, 973
TfiI GAWTC 4 cut(s) 51, 350, 694, 728
Tru1I TTAA 3 cut(s) 39, 546, 1122
Tru9I TTAA 3 cut(s) 39, 546, 1122
TscAI CASTG 2 cut(s) 66, 730
TseFI GTSAC 4 cut(s) 74, 410, 704, 917
TseI GCWGC 1 cut(s) 557
Tsp45I GTSAC 4 cut(s) 74, 410, 704, 917
TspDTI ATGAA 3 cut(s) 156, 350, 684
TspGWI ACGGA 3 cut(s) 44, 548, 833
TspRI CASTG 2 cut(s) 66, 730
Vha464I CTTAAG 1 cut(s) 545
XapI RAATTY 4 cut(s) 154, 262, 1088, 1217
XbaI TCTAGA 1 cut(s) 452
XceI RCATGY 1 cut(s) 1179
XmiI GTMKAC 1 cut(s) 1172
XspI CTAG 1 cut(s) 453
ZrmI AGTACT 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.