Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011761.1

Orthogroup ID

OG0006175

Physical Location & Seq

Genomic Coordinates Forward (+)

18879 .. 21217

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011761.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atggagggtggtctgagaggtgacggaacagaagagcttaagggtcttcgaatcacctcactggatgatgagagtgatgaagaagaactacaacagaaagaagaaattgttgtagatgatgatgaggaggaagaggaagaggaagaagatgaagaagcaagagattctgtggttttaggttttgtgaaaaggcccaaaaaagccagctctcttctacgccatttcttcccttcaaaggctggaggagttcctgcttggttggatccagaaaatttgccatccggaagatcttgtctttgtgacctatgtggtgaacctttgcaatttatgcttcaggtgtatgcaccagaggagaagccatccacatttcatcgaacattgtttgtttttatgtgtacatcaatggcgtgtcttcgtcgagatcaacatgagcaatggaaatgccatcgggacaacccttccagaagtgtgaaggttttccgctgccaattacctcgtgataatcctttctacccaagtgagcccccaaagaagggtactgagcctccattggctagagctgcactctgcaattggtgtggtacctggaaagggattaaacgctgtactggttgcagacaaacactttattgctcagagaaacattgggtcaagcattcccgctccggtcatgaatctgactgtcagcgtatgaggataagttctcagttggttgaaggtagctctgctaccgctgaaaacccttcttctgtagtccagaaagttgcaagcaaagctttatggcctgaatacaagatcatacaggagtttgaaagtgcttatgacacacggatgcctgatgataatgtgaatgctaactccatggtctgtaggaaccagatggatgatggattgatgtcgatagcagacaagtttgcgggtgatggtgacaaaaagagctgggcgtcatttcaagagcgaatagacctggcccctgaacaagtattaaggtattgtaggagttctggtgctaaacccctatggcccctgactagcggccgaccatcaaaggctgacattcctaaatgccattattgtgatggtccattgtgttttgaatttcagattttgcctcagttgctatattactttcatgtgaagaatgatgcagactctcttgattgggctacaattgttgtgtatacatgtgaagcctcttgtgatgccagtgaggcgtacaaagaagaatttgcttgggtccaaatttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD2_C zf-MYND

Protein Analysis

416

Amino Acids

47.31

Weight (kDa)

5.04

Isoelectric Point (pI)

64.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02220
fragaria_vesca	FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570 FvH4_3g14570
malus_domestica	MD05G1235200.v1.1 MD10G1211200.v1.1
prunus_persica	Prupe.4G131100_v2.0.a1
pyrus_communis	pycom05g21210
rosa_chinensis	RchiOBHm_Chr5g0024021
rosa_laevigata	RLG00000032755
rosa_multiflora	Rmu_sc0005837.1_g000013 Rmu_sc0011761.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055220
rosa_rugosa	Rorug05G0080800 Rorug05G0080900 Rorug05G0081000
rosa_samantha	Rh5AG171300 Rh5BG168000 Rh5CG183500 Rh5DG170000
rosa_wichuraiana	Rw5G015500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	581
AccBSI	CCGCTC	1 cut(s)	663
AccI	GTMKAC	1 cut(s)	1181
AccIII	TCCGGA	1 cut(s)	281
AciI	CCGC	5 cut(s)	481, 661, 732, 917, 1035
AclWI	GGATC	2 cut(s)	257, 270
AcoI	YGGCCR	1 cut(s)	1036
AcsI	RAATTY	4 cut(s)	271, 1097, 1226, 1242
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	944
AfaI	GTAC	5 cut(s)	397, 538, 583, 607, 1217
AfiI	CCNNNNNNNGG	4 cut(s)	235, 532, 533, 591
AflII	CTTAAG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	1184
AgsI	TTSAA	5 cut(s)	234, 716, 812, 953, 1097
AjnI	CCWGG	2 cut(s)	584, 966
AluBI	AGCT	6 cut(s)	37, 207, 560, 723, 776, 939
AluI	AGCT	6 cut(s)	37, 207, 560, 723, 776, 939
AlwI	GGATC	2 cut(s)	257, 270
Aor13HI	TCCGGA	1 cut(s)	281
AoxI	GGCC	5 cut(s)	191, 782, 969, 1022, 1036
ApeKI	GCWGC	2 cut(s)	483, 560
ApoI	RAATTY	4 cut(s)	271, 1097, 1226, 1242
Asp700I	GAANNNNTTC	1 cut(s)	476
Asp718I	GGTACC	1 cut(s)	581
AspS9I	GGNCC	5 cut(s)	192, 970, 1023, 1082, 1237
AsuHPI	GGTGA	5 cut(s)	32, 46, 323, 932, 938
AsuII	TTCGAA	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	1082, 1237
BamHI	GGATCC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	581
BanII	GRGCYC	1 cut(s)	525
BarI	GAAGNNNNNNTAC	2 cut(s)	72, 104
BauI	CACGAG	1 cut(s)	495
BbsI	GAAGAC	2 cut(s)	38, 404
BbvI	GCAGC	2 cut(s)	470, 547
BccI	CCATC	8 cut(s)	286, 367, 453, 874, 881, 917, 1051, 1073
BciT130I	CCWGG	2 cut(s)	586, 968
BfaI	CTAG	2 cut(s)	555, 1032
BfmI	CTRYAG	2 cut(s)	750, 868
BfrI	CTTAAG	1 cut(s)	38
BglI	GCCNNNNNGGC	1 cut(s)	1211
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	3 cut(s)	484, 561, 1036
BlsI	GCNGC	3 cut(s)	485, 562, 1037
Bme1390I	CCNGG	2 cut(s)	586, 968
Bme18I	GGWCC	2 cut(s)	1082, 1237
BmgT120I	GGNCC	5 cut(s)	192, 970, 1023, 1082, 1237
BmiI	GGNNCC	6 cut(s)	264, 583, 875, 972, 1025, 1238
BmrFI	CCNGG	2 cut(s)	586, 968
BmsI	GCATC	3 cut(s)	822, 1135, 1192
BpiI	GAAGAC	2 cut(s)	38, 404
BplI	GAGNNNNNCTC	2 cut(s)	549, 581
BpmI	CTGGAG	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	49
BsaHI	GRCGYC	1 cut(s)	944
BsaJI	CCNNGG	1 cut(s)	861
BsaWI	WCCGGW	2 cut(s)	281, 665
BsaXI	ACNNNNNCTCC	4 cut(s)	529, 559, 991, 1021
Bsc4I	CCNNNNNNNGG	4 cut(s)	235, 532, 533, 591
Bse1I	ACTGG	3 cut(s)	66, 613, 1206
Bse3DI	GCAATG	1 cut(s)	440
BseAI	TCCGGA	1 cut(s)	281
BseBI	CCWGG	2 cut(s)	586, 968
BseDI	CCNNGG	1 cut(s)	861
BseGI	GGATG	5 cut(s)	70, 278, 359, 837, 889
BseLI	CCNNNNNNNGG	4 cut(s)	235, 532, 533, 591
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	5 cut(s)	5, 531, 648, 719, 1127
BseNI	ACTGG	3 cut(s)	66, 613, 1206
BseRI	GAGGAG	3 cut(s)	140, 258, 365
BseX3I	CGGCCG	1 cut(s)	1036
BseXI	GCAGC	2 cut(s)	470, 547
BseYI	CCCAGC	1 cut(s)	939
BsgI	GTGCAG	1 cut(s)	546
Bsh1285I	CGRYCG	1 cut(s)	1039
BshFI	GGCC	5 cut(s)	193, 784, 971, 1024, 1038
BshNI	GGYRCC	1 cut(s)	581
BsiEI	CGRYCG	1 cut(s)	1039
BsiSI	CCGG	2 cut(s)	282, 666
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	4 cut(s)	235, 532, 533, 591
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	2 cut(s)	655, 856
BsnI	GGCC	5 cut(s)	193, 784, 971, 1024, 1038
Bsp119I	TTCGAA	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp13I	TCCGGA	1 cut(s)	281
Bsp1407I	TGTACA	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	262, 287, 421, 795
Bsp19I	CCATGG	1 cut(s)	861
BspACI	CCGC	5 cut(s)	481, 661, 732, 917, 1035
BspANI	GGCC	5 cut(s)	193, 784, 971, 1024, 1038
BspCNI	CTCAG	5 cut(s)	6, 532, 647, 718, 1126
BspEI	TCCGGA	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	6 cut(s)	264, 583, 875, 972, 1025, 1238
BspPI	GGATC	2 cut(s)	257, 270
BspQI	GCTCTTC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	581
BspTI	CTTAAG	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	663
BsrDI	GCAATG	1 cut(s)	440
BsrGI	TGTACA	1 cut(s)	395
BsrI	ACTGG	3 cut(s)	66, 613, 1206
BssECI	CCNNGG	1 cut(s)	861
BssMI	GATC	4 cut(s)	262, 287, 421, 795
BssNAI	GTATAC	1 cut(s)	1182
BssNI	GRCGYC	1 cut(s)	944
BssSI	CACGAG	1 cut(s)	495
BssT1I	CCWWGG	1 cut(s)	861
Bst1107I	GTATAC	1 cut(s)	1182
Bst2BI	CACGAG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	586, 968
Bst4CI	ACNGT	1 cut(s)	683
Bst6I	CTCTTC	4 cut(s)	27, 126, 132, 216
BstACI	GRCGYC	1 cut(s)	944
BstAFI	CTTAAG	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstAUI	TGTACA	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	205, 769
BstDEI	CTNAG	6 cut(s)	14, 540, 634, 705, 1113, 1248
BstDSI	CCRYGG	1 cut(s)	861
BstF5I	GGATG	5 cut(s)	70, 278, 359, 837, 889
BstKTI	GATC	4 cut(s)	265, 290, 424, 798
BstMBI	GATC	4 cut(s)	262, 287, 421, 795
BstMCI	CGRYCG	1 cut(s)	1039
BstMWI	GCNNNNNNNGC	5 cut(s)	328, 560, 773, 1117, 1211
BstNI	CCWGG	2 cut(s)	586, 968
BstNSI	RCATGY	1 cut(s)	1188
BstSCI	CCNGG	2 cut(s)	584, 966
BstSFI	CTRYAG	2 cut(s)	750, 868
BstV1I	GCAGC	2 cut(s)	470, 547
BstV2I	GAAGAC	2 cut(s)	38, 404
BstX2I	RGATCY	2 cut(s)	262, 287
BstYI	RGATCY	2 cut(s)	262, 287
BstZ17I	GTATAC	1 cut(s)	1182
BstZI	CGGCCG	1 cut(s)	1036
BsuRI	GGCC	5 cut(s)	193, 784, 971, 1024, 1038
BtgI	CCRYGG	1 cut(s)	861
BtsCI	GGATG	5 cut(s)	70, 278, 359, 837, 889
BtsIMutI	CAGTG	2 cut(s)	59, 1213
Cac8I	GCNNGC	2 cut(s)	205, 769
CciI	TCATGA	1 cut(s)	670
Cfr13I	GGNCC	5 cut(s)	192, 970, 1023, 1082, 1237
CseI	GACGC	1 cut(s)	933
Csp6I	GTAC	5 cut(s)	396, 537, 582, 606, 1216
CspCI	CAANNNNNGTGG	2 cut(s)	559, 594
CviAII	CATG	5 cut(s)	428, 671, 862, 1133, 1185
CviQI	GTAC	5 cut(s)	396, 537, 582, 606, 1216
DdeI	CTNAG	6 cut(s)	14, 540, 634, 705, 1113, 1248
DpnI	GATC	4 cut(s)	264, 289, 423, 797
DpnII	GATC	4 cut(s)	262, 287, 421, 795
EaeI	YGGCCR	1 cut(s)	1036
EagI	CGGCCG	1 cut(s)	1036
Eam1104I	CTCTTC	4 cut(s)	27, 126, 132, 216
EarI	CTCTTC	4 cut(s)	27, 126, 132, 216
EclXI	CGGCCG	1 cut(s)	1036
Eco130I	CCWWGG	1 cut(s)	861
Eco24I	GRGCYC	1 cut(s)	525
Eco47I	GGWCC	2 cut(s)	1082, 1237
Eco52I	CGGCCG	1 cut(s)	1036
Eco57I	CTGAAG	1 cut(s)	317
EcoRII	CCWGG	2 cut(s)	584, 966
EcoT14I	CCWWGG	1 cut(s)	861
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	861
FaeI	CATG	5 cut(s)	431, 674, 865, 1136, 1188
FalI	AAGNNNNNCTT	2 cut(s)	760, 792
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	5 cut(s)	427, 670, 861, 1132, 1184
FauI	CCCGC	2 cut(s)	668, 910
FblI	GTMKAC	1 cut(s)	1181
Fnu4HI	GCNGC	3 cut(s)	484, 561, 1036
FokI	GGATG	5 cut(s)	77, 265, 346, 844, 896
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	3 cut(s)	484, 561, 1036
FspBI	CTAG	2 cut(s)	555, 1032
GluI	GCNGC	3 cut(s)	484, 561, 1036
GsaI	CCCAGC	1 cut(s)	943
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	5 cut(s)	193, 784, 971, 1024, 1038
HapII	CCGG	2 cut(s)	282, 666
HgaI	GACGC	1 cut(s)	933
Hin1I	GRCGYC	1 cut(s)	944
Hin1II	CATG	5 cut(s)	431, 674, 865, 1136, 1188
HindIII	AAGCTT	1 cut(s)	774
HinfI	GANTC	4 cut(s)	51, 164, 674, 1151
HpaII	CCGG	2 cut(s)	282, 666
HphI	GGTGA	5 cut(s)	32, 46, 323, 932, 938
Hpy166II	GTNNAC	3 cut(s)	314, 396, 1182
Hpy188I	TCNGA	4 cut(s)	15, 637, 679, 1104
Hpy8I	GTNNAC	3 cut(s)	314, 396, 1182
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	6 cut(s)	240, 466, 468, 526, 710, 753
HpyCH4III	ACNGT	1 cut(s)	683
HpyCH4V	TGCA	7 cut(s)	322, 344, 563, 570, 615, 767, 1148
HpyF10VI	GCNNNNNNNGC	5 cut(s)	328, 560, 773, 1117, 1211
HpyF3I	CTNAG	6 cut(s)	14, 540, 634, 705, 1113, 1248
Hsp92I	GRCGYC	1 cut(s)	944
Hsp92II	CATG	5 cut(s)	431, 674, 865, 1136, 1188
Kpn2I	TCCGGA	1 cut(s)	281
KpnI	GGTACC	1 cut(s)	585
Kzo9I	GATC	4 cut(s)	262, 287, 421, 795
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	2 cut(s)	470, 547
LweI	GCATC	3 cut(s)	822, 1135, 1192
MaeI	CTAG	2 cut(s)	555, 1032
MaeIII	GTNAC	3 cut(s)	20, 299, 926
MalI	GATC	4 cut(s)	264, 289, 423, 797
MbiI	CCGCTC	1 cut(s)	663
MboI	GATC	4 cut(s)	262, 287, 421, 795
MfeI	CAATTG	2 cut(s)	571, 1170
MflI	RGATCY	2 cut(s)	262, 287
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	9 cut(s)	105, 271, 323, 488, 571, 1097, 1170, 1226, 1242
MlyI	GAGTC	1 cut(s)	1145
MmeI	TCCRAC	1 cut(s)	240
MroI	TCCGGA	1 cut(s)	281
MroXI	GAANNNNTTC	1 cut(s)	476
MseI	TTAA	3 cut(s)	39, 597, 986
MslI	CAYNNNNRTG	2 cut(s)	830, 1074
MspA1I	CMGCKG	2 cut(s)	483, 734
MspCI	CTTAAG	1 cut(s)	38
MspI	CCGG	2 cut(s)	282, 666
MspR9I	CCNGG	2 cut(s)	586, 968
MunI	CAATTG	2 cut(s)	571, 1170
Mva1269I	GAATGC	2 cut(s)	655, 856
MvaI	CCWGG	2 cut(s)	586, 968
MwoI	GCNNNNNNNGC	5 cut(s)	328, 560, 773, 1117, 1211
NcoI	CCATGG	1 cut(s)	861
NdeII	GATC	4 cut(s)	262, 287, 421, 795
NlaIII	CATG	5 cut(s)	431, 674, 865, 1136, 1188
NlaIV	GGNNCC	6 cut(s)	264, 583, 875, 972, 1025, 1238
NmuCI	GTSAC	3 cut(s)	20, 299, 926
NspI	RCATGY	1 cut(s)	1188
NspV	TTCGAA	1 cut(s)	49
PagI	TCATGA	1 cut(s)	670
PciI	ACATGT	1 cut(s)	1184
PciSI	GCTCTTC	1 cut(s)	27
PctI	GAATGC	2 cut(s)	655, 856
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	3 cut(s)	51, 164, 674
PkrI	GCNGC	3 cut(s)	485, 562, 1037
PleI	GAGTC	1 cut(s)	1145
PpsI	GAGTC	1 cut(s)	1145
PscI	ACATGT	1 cut(s)	1184
Psp6I	CCWGG	2 cut(s)	584, 966
PspFI	CCCAGC	1 cut(s)	939
PspGI	CCWGG	2 cut(s)	584, 966
PspN4I	GGNNCC	6 cut(s)	264, 583, 875, 972, 1025, 1238
PspPI	GGNCC	5 cut(s)	192, 970, 1023, 1082, 1237
PsuI	RGATCY	2 cut(s)	262, 287
RsaI	GTAC	5 cut(s)	397, 538, 583, 607, 1217
RsaNI	GTAC	5 cut(s)	396, 537, 582, 606, 1216
RseI	CAYNNNNRTG	2 cut(s)	830, 1074
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	39, 597, 986
SatI	GCNGC	3 cut(s)	484, 561, 1036
Sau3AI	GATC	4 cut(s)	262, 287, 421, 795
Sau96I	GGNCC	5 cut(s)	192, 970, 1023, 1082, 1237
SchI	GAGTC	1 cut(s)	1145
ScrFI	CCNGG	2 cut(s)	586, 968
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	3 cut(s)	822, 1135, 1192
SfcI	CTRYAG	2 cut(s)	750, 868
SfuI	TTCGAA	1 cut(s)	49
SinI	GGWCC	2 cut(s)	1082, 1237
SmiMI	CAYNNNNRTG	2 cut(s)	830, 1074
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	9 cut(s)	105, 271, 323, 488, 571, 1097, 1170, 1226, 1242
SsiI	CCGC	5 cut(s)	481, 661, 732, 917, 1035
SspMI	CTAG	2 cut(s)	555, 1032
StyD4I	CCNGG	2 cut(s)	584, 966
StyI	CCWWGG	1 cut(s)	861
TaaI	ACNGT	1 cut(s)	683
TaqI	TCGA	4 cut(s)	49, 373, 418, 899
TasI	AATT	9 cut(s)	105, 271, 323, 488, 571, 1097, 1170, 1226, 1242
TatI	WGTACW	2 cut(s)	395, 605
TauI	GCSGC	1 cut(s)	1038
TfiI	GAWTC	3 cut(s)	51, 164, 674
Tru1I	TTAA	3 cut(s)	39, 597, 986
Tru9I	TTAA	3 cut(s)	39, 597, 986
TscAI	CASTG	2 cut(s)	66, 1213
TseFI	GTSAC	3 cut(s)	20, 299, 926
TseI	GCWGC	2 cut(s)	483, 560
Tsp45I	GTSAC	3 cut(s)	20, 299, 926
TspDTI	ATGAA	5 cut(s)	93, 165, 359, 687, 1121
TspGWI	ACGGA	2 cut(s)	39, 844
TspRI	CASTG	2 cut(s)	66, 1213
Vha464I	CTTAAG	1 cut(s)	38
VpaK11BI	GGWCC	2 cut(s)	1082, 1237
XapI	RAATTY	4 cut(s)	271, 1097, 1226, 1242
XceI	RCATGY	1 cut(s)	1188
XcmI	CCANNNNNNNNNTGG	2 cut(s)	884, 1076
XmiI	GTMKAC	1 cut(s)	1181
XmnI	GAANNNNTTC	1 cut(s)	476
XspI	CTAG	2 cut(s)	555, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.