MD05G1235200.v1.1

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0006175
Physical Location & Seq
Reverse (-)
36721573 .. 36724678
3106 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1235200.v1.1.491

Sequence Viewer

Length: 1242 bp
ATGGCTGGTACTCTGAAGGGTGATGGTACGGAAGAGTTTAAGGGTCTTAGAATCACATCACTGGACGATGATAGTGACCAAGAAGAAGAACAAAGGGAGCAAGATATTGCTATGGATGACGATGACGAAGAAGAAGAAGATGAAGAAGCAAGAAATTCGGTTATTTTGGGTTTTTTGAAAAAGCCCAAGAAAGCCCGGTCTCTTCTTCGTCATTTCTTTCCTTCCAAGGCTGGAGGGGTTCCTGCTTGGCTGGATCCAGAAAATTTGCCATCGGGGAGATCGTGCTTTTGCGACATATGCGGCGAACCTTTGCAATTTGTGCTTCAGGTGTATGCGCCGGAGGAGAAGGAATCTGCTTTTCATCGAACATTGTTTGTTTTTATGTGTACATCAATGGTGTGTCTTCGTCGTGATCAACATGAACAATGGAAATGCCAGCGGGACAAGCCCTCTAGAAGCGTGAAGGTTTTTCGCTGCCAATTACCCCGCGATAATCCTTTCTACTCAAGTGAGCCTCCAAAGAAGGATAGTACAGACGACCCTCTTAAGGCTGGAGCTGCACTCTGTAGTTGGTGTGGTACCTGGAAGGGGAGTAAACGCTGTACTGGTTGCAGAAAAGCACTTTATTGCTCAGAGAAACATTGGGTCAAGCATTCTCGGTCTGGTCATGAACATGATTGTCAACGATTGAGGATTCAGCTGGGCGACAGTAGCTCTGCTAACAGTGAATCCACTTCTACTGTAATTCTAAAAGTTGCAAGCAATCATTTATGGCCAGAATACAAAATTATACAGGAGCCTGAAAGTTCGTATGACACAGAAATGCCTGATGATAATGTGGGCACTAATTCTTTGATCTCTAGTAACCGGATGGATGACGGGCTAATGTCGATAGCAGACAATTTTACGGGTGATGGTGACAGAAAGAGCTGGGCTTCGTTCCATGTGCGCATAGCCCTCGCCCCTGAACAAATACTAAGGTACTGTAGGAGTCCAGGTGCTACACCCTTATGGCCGGTGTCAAGCGGCCGGCCATCCACGGCTGACATTCCTAAATGCAGTTACTGTAGTGGCCCAATGTGTTTTGAATTTCAGATTATGCCTCAGTTGCTATTTTACTTTAACGTGAAGAATGACGTGGACTCGCTTGATTGGGCTACGATCGCTGTGTATACATGTGAAGCCTCCTGTGATGCAAGCGTGGTTTACAAAGAAGAATTCGCTTGGGTTCAACTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDCD2_C zf-MYND

Protein Analysis

414

Amino Acids

46.7

Weight (kDa)

5.12

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDCD2_C PF04194 309 - 411 4.5e-32 Programmed cell death protein 2, C-terminal putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 950
Acc65I GGTACC 1 cut(s) 578
AccB1I GGYRCC 1 cut(s) 578
AccI GTMKAC 1 cut(s) 1172
AccII CGCG 1 cut(s) 489
AciI CCGC 4 cut(s) 300, 439, 487, 1026
AclWI GGATC 2 cut(s) 248, 261
AcoI YGGCCR 4 cut(s) 773, 1013, 1027, 1031
AcsI RAATTY 4 cut(s) 154, 262, 1088, 1217
AcuI CTGAAG 2 cut(s) 35, 308
AfaI GTAC 7 cut(s) 10, 28, 388, 532, 580, 604, 983
AfiI CCNNNNNNNGG 2 cut(s) 547, 588
AflII CTTAAG 1 cut(s) 545
AflIII ACRYGT 1 cut(s) 1175
AgsI TTSAA 3 cut(s) 178, 1088, 1232
AjiI CACGTC 1 cut(s) 1138
AjnI CCWGG 2 cut(s) 581, 994
AluBI AGCT 4 cut(s) 557, 700, 714, 930
AluI AGCT 4 cut(s) 557, 700, 714, 930
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 2 cut(s) 248, 261
AlwNI CAGNNNCTG 1 cut(s) 1065
AoxI GGCC 5 cut(s) 773, 1013, 1027, 1031, 1072
ApeKI GCWGC 2 cut(s) 474, 557
ApoI RAATTY 4 cut(s) 154, 262, 1088, 1217
Asp718I GGTACC 1 cut(s) 578
AspLEI GCGC 2 cut(s) 337, 951
AspS9I GGNCC 1 cut(s) 1073
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 3 cut(s) 32, 923, 929
BaeGI GKGCMC 1 cut(s) 845
BalI TGGCCA 1 cut(s) 775
BamHI GGATCC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 395
BbvI GCAGC 2 cut(s) 461, 544
BccI CCATC 5 cut(s) 17, 277, 865, 908, 1042
BceAI ACGGC 1 cut(s) 1056
BcgI CGANNNNNNTGC 4 cut(s) 138, 172, 940, 974
BciT130I CCWGG 2 cut(s) 583, 996
BclI TGATCA 1 cut(s) 412
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 2 cut(s) 453, 861
BfmI CTRYAG 3 cut(s) 565, 985, 1066
BfrI CTTAAG 1 cut(s) 545
BisI GCNGC 4 cut(s) 301, 475, 558, 1027
BlsI GCNGC 4 cut(s) 302, 476, 559, 1028
Bme1390I CCNGG 3 cut(s) 196, 583, 996
BmgBI CACGTC 1 cut(s) 1138
BmgT120I GGNCC 1 cut(s) 1073
BmiI GGNNCC 4 cut(s) 240, 255, 580, 798
BmrFI CCNGG 3 cut(s) 196, 583, 996
BmsI GCATC 1 cut(s) 1183
BpiI GAAGAC 1 cut(s) 395
BplI GAGNNNNNCTC 2 cut(s) 546, 578
BpmI CTGGAG 2 cut(s) 252, 573
BpuEI CTTGAG 1 cut(s) 490
BpuMI CCSGG 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 225, 1038
BsaWI WCCGGW 1 cut(s) 867
BsaXI ACNNNNNCTCC 2 cut(s) 982, 1012
Bsc4I CCNNNNNNNGG 2 cut(s) 547, 588
Bse118I RCCGGY 2 cut(s) 1015, 1029
Bse1I ACTGG 2 cut(s) 66, 610
BseBI CCWGG 2 cut(s) 583, 996
BseDI CCNNGG 2 cut(s) 225, 1038
BseGI GGATG 4 cut(s) 121, 876, 880, 1034
BseLI CCNNNNNNNGG 2 cut(s) 547, 588
BseMII CTCAG 2 cut(s) 645, 1118
BseNI ACTGG 2 cut(s) 66, 610
BseRI GAGGAG 1 cut(s) 356
BseSI GKGCMC 1 cut(s) 845
BseX3I CGGCCG 1 cut(s) 1027
BseXI GCAGC 2 cut(s) 461, 544
BseYI CCCAGC 2 cut(s) 700, 930
BsgI GTGCAG 1 cut(s) 543
Bsh1236I CGCG 1 cut(s) 489
Bsh1285I CGRYCG 2 cut(s) 1030, 1164
BshFI GGCC 5 cut(s) 775, 1015, 1029, 1033, 1074
BshNI GGYRCC 1 cut(s) 578
BsiEI CGRYCG 2 cut(s) 1030, 1164
BsiSI CCGG 5 cut(s) 196, 338, 868, 1016, 1030
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 2 cut(s) 547, 588
BsmAI GTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 455
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 5 cut(s) 775, 1015, 1029, 1033, 1074
Bso31I GGTCTC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 845
Bsp1407I TGTACA 1 cut(s) 386
Bsp143I GATC 5 cut(s) 253, 278, 412, 855, 1161
BspACI CCGC 4 cut(s) 300, 439, 487, 1026
BspANI GGCC 5 cut(s) 775, 1015, 1029, 1033, 1074
BspCNI CTCAG 2 cut(s) 644, 1117
BspFNI CGCG 1 cut(s) 489
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 4 cut(s) 240, 255, 580, 798
BspPI GGATC 2 cut(s) 248, 261
BspT107I GGYRCC 1 cut(s) 578
BspTI CTTAAG 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 204
BsrFI RCCGGY 2 cut(s) 1015, 1029
BsrGI TGTACA 1 cut(s) 386
BsrI ACTGG 2 cut(s) 66, 610
BssAI RCCGGY 2 cut(s) 1015, 1029
BssECI CCNNGG 2 cut(s) 225, 1038
BssMI GATC 5 cut(s) 253, 278, 412, 855, 1161
BssNAI GTATAC 1 cut(s) 1173
BssT1I CCWWGG 1 cut(s) 225
Bst1107I GTATAC 1 cut(s) 1173
Bst2UI CCWGG 2 cut(s) 583, 996
Bst4CI ACNGT 5 cut(s) 710, 725, 742, 986, 1067
Bst6I CTCTTC 2 cut(s) 27, 207
BstAFI CTTAAG 1 cut(s) 545
BstAPI GCANNNNNTGC 1 cut(s) 319
BstAUI TGTACA 1 cut(s) 386
BstC8I GCNNGC 4 cut(s) 437, 760, 1031, 1198
BstDEI CTNAG 5 cut(s) 47, 631, 977, 1104, 1239
BstDSI CCRYGG 1 cut(s) 1038
BstF5I GGATG 4 cut(s) 121, 876, 880, 1034
BstFNI CGCG 1 cut(s) 489
BstHHI GCGC 2 cut(s) 337, 951
BstKTI GATC 5 cut(s) 256, 281, 415, 858, 1164
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 5 cut(s) 253, 278, 412, 855, 1161
BstMCI CGRYCG 2 cut(s) 1030, 1164
BstMWI GCNNNNNNNGC 7 cut(s) 297, 319, 445, 557, 711, 1108, 1163
BstNI CCWGG 2 cut(s) 583, 996
BstNSI RCATGY 1 cut(s) 1179
BstSCI CCNGG 3 cut(s) 194, 581, 994
BstSFI CTRYAG 3 cut(s) 565, 985, 1066
BstSLI GKGCMC 1 cut(s) 845
BstUI CGCG 1 cut(s) 489
BstV1I GCAGC 2 cut(s) 461, 544
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BstZ17I GTATAC 1 cut(s) 1173
BstZI CGGCCG 1 cut(s) 1027
BsuRI GGCC 5 cut(s) 775, 1015, 1029, 1033, 1074
BtgI CCRYGG 1 cut(s) 1038
BtrI CACGTC 1 cut(s) 1138
BtsCI GGATG 4 cut(s) 121, 876, 880, 1034
BtsIMutI CAGTG 2 cut(s) 59, 730
Cac8I GCNNGC 4 cut(s) 437, 760, 1031, 1198
CaiI CAGNNNCTG 1 cut(s) 1065
CciI TCATGA 1 cut(s) 667
CfoI GCGC 2 cut(s) 337, 951
Cfr10I RCCGGY 2 cut(s) 1015, 1029
Cfr13I GGNCC 1 cut(s) 1073
Csp6I GTAC 7 cut(s) 9, 27, 387, 531, 579, 603, 982
CviAII CATG 5 cut(s) 419, 668, 674, 944, 1176
CviQI GTAC 7 cut(s) 9, 27, 387, 531, 579, 603, 982
DdeI CTNAG 5 cut(s) 47, 631, 977, 1104, 1239
DpnI GATC 5 cut(s) 255, 280, 414, 857, 1163
DpnII GATC 5 cut(s) 253, 278, 412, 855, 1161
EaeI YGGCCR 4 cut(s) 773, 1013, 1027, 1031
EagI CGGCCG 1 cut(s) 1027
Eam1104I CTCTTC 2 cut(s) 27, 207
EarI CTCTTC 2 cut(s) 27, 207
EclXI CGGCCG 1 cut(s) 1027
Eco130I CCWWGG 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 204
Eco52I CGGCCG 1 cut(s) 1027
Eco57I CTGAAG 2 cut(s) 35, 308
EcoRI GAATTC 1 cut(s) 1217
EcoRII CCWGG 2 cut(s) 581, 994
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 5 cut(s) 422, 671, 677, 947, 1179
FaqI GGGAC 1 cut(s) 455
FatI CATG 5 cut(s) 418, 667, 673, 943, 1175
FauI CCCGC 2 cut(s) 432, 494
FauNDI CATATG 1 cut(s) 296
FbaI TGATCA 1 cut(s) 412
FblI GTMKAC 1 cut(s) 1172
Fnu4HI GCNGC 4 cut(s) 301, 475, 558, 1027
FokI GGATG 4 cut(s) 128, 883, 887, 1021
FseI GGCCGGCC 1 cut(s) 1033
Fsp4HI GCNGC 4 cut(s) 301, 475, 558, 1027
FspAI RTGCGCAY 1 cut(s) 950
FspBI CTAG 2 cut(s) 453, 861
FspI TGCGCA 1 cut(s) 950
GlaI GCGC 2 cut(s) 336, 950
GluI GCNGC 4 cut(s) 301, 475, 558, 1027
GsaI CCCAGC 2 cut(s) 704, 934
GsuI CTGGAG 2 cut(s) 252, 573
HaeIII GGCC 5 cut(s) 775, 1015, 1029, 1033, 1074
HapII CCGG 5 cut(s) 196, 338, 868, 1016, 1030
HhaI GCGC 2 cut(s) 337, 951
Hin1II CATG 5 cut(s) 422, 671, 677, 947, 1179
Hin6I GCGC 2 cut(s) 335, 949
HinP1I GCGC 2 cut(s) 335, 949
HincII GTYRAC 1 cut(s) 683
HindII GTYRAC 1 cut(s) 683
HinfI GANTC 6 cut(s) 51, 350, 694, 728, 991, 1142
HpaII CCGG 5 cut(s) 196, 338, 868, 1016, 1030
HphI GGTGA 3 cut(s) 32, 923, 929
Hpy166II GTNNAC 6 cut(s) 387, 596, 683, 1141, 1173, 1207
Hpy188I TCNGA 3 cut(s) 15, 634, 1095
Hpy188III TCNNGA 4 cut(s) 257, 410, 453, 668
Hpy8I GTNNAC 6 cut(s) 387, 596, 683, 1141, 1173, 1207
Hpy99I CGWCG 1 cut(s) 411
HpyAV CCTTC 6 cut(s) 10, 231, 340, 457, 517, 580
HpyCH4III ACNGT 5 cut(s) 710, 725, 742, 986, 1067
HpyCH4IV ACGT 2 cut(s) 1125, 1137
HpyCH4V TGCA 6 cut(s) 313, 560, 612, 758, 1059, 1196
HpyF10VI GCNNNNNNNGC 7 cut(s) 297, 319, 445, 557, 711, 1108, 1163
HpyF3I CTNAG 5 cut(s) 47, 631, 977, 1104, 1239
HpySE526I ACGT 2 cut(s) 1125, 1137
Hsp92II CATG 5 cut(s) 422, 671, 677, 947, 1179
HspAI GCGC 2 cut(s) 335, 949
KpnI GGTACC 1 cut(s) 582
KroI GCCGGC 1 cut(s) 1029
KroNI GCCGGC 1 cut(s) 1031
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 5 cut(s) 253, 278, 412, 855, 1161
LmnI GCTCC 3 cut(s) 97, 554, 796
Lsp1109I GCAGC 2 cut(s) 461, 544
LweI GCATC 1 cut(s) 1183
MaeI CTAG 2 cut(s) 453, 861
MaeII ACGT 2 cut(s) 1125, 1137
MaeIII GTNAC 4 cut(s) 74, 863, 917, 1061
MalI GATC 5 cut(s) 255, 280, 414, 857, 1163
MboI GATC 5 cut(s) 253, 278, 412, 855, 1161
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 845
MlsI TGGCCA 1 cut(s) 775
MluNI TGGCCA 1 cut(s) 775
MlyI GAGTC 2 cut(s) 1000, 1136
MnlI CCTC 9 cut(s) 227, 334, 460, 525, 552, 684, 968, 1113, 1195
Mox20I TGGCCA 1 cut(s) 775
MroNI GCCGGC 1 cut(s) 1029
MscI TGGCCA 1 cut(s) 775
MseI TTAA 3 cut(s) 39, 546, 1122
MslI CAYNNNNRTG 3 cut(s) 672, 821, 1009
Msp20I TGGCCA 1 cut(s) 775
MspA1I CMGCKG 2 cut(s) 439, 700
MspCI CTTAAG 1 cut(s) 545
MspI CCGG 5 cut(s) 196, 338, 868, 1016, 1030
MspR9I CCNGG 3 cut(s) 196, 583, 996
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 2 cut(s) 583, 996
MvnI CGCG 1 cut(s) 489
MwoI GCNNNNNNNGC 7 cut(s) 297, 319, 445, 557, 711, 1108, 1163
NaeI GCCGGC 1 cut(s) 1031
NciI CCSGG 1 cut(s) 196
NdeI CATATG 1 cut(s) 296
NdeII GATC 5 cut(s) 253, 278, 412, 855, 1161
NgoMIV GCCGGC 1 cut(s) 1029
NlaIII CATG 5 cut(s) 422, 671, 677, 947, 1179
NlaIV GGNNCC 4 cut(s) 240, 255, 580, 798
NmuCI GTSAC 2 cut(s) 74, 917
NsbI TGCGCA 1 cut(s) 950
NspI RCATGY 1 cut(s) 1179
PagI TCATGA 1 cut(s) 667
PciI ACATGT 1 cut(s) 1175
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PctI GAATGC 1 cut(s) 652
PdiI GCCGGC 1 cut(s) 1031
PfeI GAWTC 4 cut(s) 51, 350, 694, 728
PkrI GCNGC 4 cut(s) 302, 476, 559, 1028
Ple19I CGATCG 1 cut(s) 1164
PleI GAGTC 2 cut(s) 999, 1136
PpsI GAGTC 2 cut(s) 999, 1136
PscI ACATGT 1 cut(s) 1175
Psp6I CCWGG 2 cut(s) 581, 994
PspFI CCCAGC 2 cut(s) 700, 930
PspGI CCWGG 2 cut(s) 581, 994
PspN4I GGNNCC 4 cut(s) 240, 255, 580, 798
PspPI GGNCC 1 cut(s) 1073
PstNI CAGNNNCTG 1 cut(s) 1065
PsuI RGATCY 1 cut(s) 253
PvuI CGATCG 1 cut(s) 1164
PvuII CAGCTG 1 cut(s) 700
RigI GGCCGGCC 1 cut(s) 1033
RsaI GTAC 7 cut(s) 10, 28, 388, 532, 580, 604, 983
RsaNI GTAC 7 cut(s) 9, 27, 387, 531, 579, 603, 982
RseI CAYNNNNRTG 3 cut(s) 672, 821, 1009
SaqAI TTAA 3 cut(s) 39, 546, 1122
SatI GCNGC 4 cut(s) 301, 475, 558, 1027
Sau3AI GATC 5 cut(s) 253, 278, 412, 855, 1161
Sau96I GGNCC 1 cut(s) 1073
SchI GAGTC 2 cut(s) 1000, 1136
ScrFI CCNGG 3 cut(s) 196, 583, 996
SduI GDGCHC 1 cut(s) 845
SfaNI GCATC 1 cut(s) 1183
SfcI CTRYAG 3 cut(s) 565, 985, 1066
SmiMI CAYNNNNRTG 3 cut(s) 672, 821, 1009
SmlI CTYRAG 2 cut(s) 505, 545
SmoI CTYRAG 2 cut(s) 505, 545
SsiI CCGC 4 cut(s) 300, 439, 487, 1026
SspMI CTAG 2 cut(s) 453, 861
StyD4I CCNGG 3 cut(s) 194, 581, 994
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 5 cut(s) 710, 725, 742, 986, 1067
TaiI ACGT 2 cut(s) 1128, 1140
TaqI TCGA 2 cut(s) 364, 890
TaqII GACCGA 1 cut(s) 648
TatI WGTACW 3 cut(s) 386, 530, 602
TauI GCSGC 2 cut(s) 303, 1029
TfiI GAWTC 4 cut(s) 51, 350, 694, 728
Tru1I TTAA 3 cut(s) 39, 546, 1122
Tru9I TTAA 3 cut(s) 39, 546, 1122
TscAI CASTG 2 cut(s) 66, 730
TseFI GTSAC 2 cut(s) 74, 917
TseI GCWGC 2 cut(s) 474, 557
Tsp45I GTSAC 2 cut(s) 74, 917
TspDTI ATGAA 4 cut(s) 156, 350, 435, 684
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 2 cut(s) 66, 730
Vha464I CTTAAG 1 cut(s) 545
XapI RAATTY 4 cut(s) 154, 262, 1088, 1217
XbaI TCTAGA 1 cut(s) 452
XceI RCATGY 1 cut(s) 1179
XmiI GTMKAC 1 cut(s) 1172
XspI CTAG 2 cut(s) 453, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.