AT4G02530

Thylakoid lumenal 16.5 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011404
Physical Location & Seq
Reverse (-)
1112082 .. 1114158
2077 bp
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UTR
Exon/CDS
Intron
AT4G02530.2

Sequence Viewer

Length: 651 bp
ATGGCGAAATCACTCCTTTGTTCATCAACCTTAAACCCTTTCTTCTCCACCACTCTCTCCTCTTCGAAGAAGAACCAAATTGCATACTCGGGAAACAGCAAGAACCAGACATCGTCGTCTCTGTTATGGAAAAGAAGGGAACTGTCGCTTGGATTTATGAGCAGCTTAGTTGCGATTGGTCTCGTGAGTAATGACAGAAGAAGACACGACGCGAATGCAGCGATTCTTGAAGCTGATGACGATGAAGAGCTTCTCGAGAAAGTGAAGCAAGATCGGAAAAAGAGGATTGAGAGACAAGCTGTTCTTAATTCTGCTGTCAAGGAAAAGGGGTATTTGCAGGATCTTGTTTACAAGTTGAGCAAGGTAGGACAAGCCATTGAGAACAATGATCTACCAGCTGCAGGTTTGGTTTTGGGGAAAGGCATTGATACCGAATGGGTCAAAACCGTTAATCTGGCTTTCACAAAGTTGAGTACAAGCCCAGAAGAGAATACAGAGGTGGAAGCATTCAATTCATCATTGGCTTCTCTTATCACATCAGTGAACAAGAACGATATAGAGTCATCGAAGCTCGCTTTCGTTTCATCAGCTGGTGCATTTGAGAAATGGACTACTTTGACAGGTCTTTTGGAACAGCTTAAGGGACTGTGA

Protein Analysis

216

Amino Acids

23.66

Weight (kDa)

8.54

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPH2 PF20675 161 - 266 3.1e-45 Maintenance of Photosystem II under High light 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02530 AT4G02530 AT4G02530
fragaria_vesca FvH4_1g03010
malus_domestica MD02G1029500.v1.1 MD15G1170900.v1.1
prunus_persica Prupe.7G245400_v2.0.a1
pyrus_communis pycom02g02440 pycom15g15240
rosa_chinensis RchiOBHm_Chr2g0088141
rosa_laevigata RLG00000015925
rosa_multiflora Rmu_co7966632.1_g000001 Rmu_sc0003275.1_g000049
rosa_roxburghii Rroxscaffold_2G00152930
rosa_rugosa Rorug01G0481300
rosa_samantha Rh2AG036200 Rh2BG035400 Rh2CG036600 Rh2DG035900
rosa_wichuraiana Rw2G002850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 115
Acc36I ACCTGC 1 cut(s) 392
AccII CGCG 1 cut(s) 212
AclWI GGATC 1 cut(s) 348
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 1 cut(s) 401
AflII CTTAAG 1 cut(s) 638
AgsI TTSAA 2 cut(s) 230, 511
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AleI CACNNNNGTG 1 cut(s) 539
AluBI AGCT 8 cut(s) 165, 233, 250, 299, 398, 571, 590, 637
AluI AGCT 8 cut(s) 165, 233, 250, 299, 398, 571, 590, 637
Alw26I GTCTC 3 cut(s) 123, 185, 286
AlwI GGATC 1 cut(s) 348
Ama87I CYCGRG 2 cut(s) 88, 254
ApeKI GCWGC 3 cut(s) 162, 218, 398
ArsI GACNNNNNNTTYG 2 cut(s) 610, 642
Asp700I GAANNNNTTC 1 cut(s) 249
AsuII TTCGAA 1 cut(s) 65
AvaI CYCGRG 2 cut(s) 88, 254
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 208
BbvI GCAGC 3 cut(s) 174, 230, 385
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BcoDI GTCTC 3 cut(s) 123, 185, 286
BfmI CTRYAG 1 cut(s) 399
BfrI CTTAAG 1 cut(s) 638
BfuAI ACCTGC 1 cut(s) 392
BisI GCNGC 3 cut(s) 163, 219, 399
BlsI GCNGC 3 cut(s) 164, 220, 400
BmeT110I CYCGRG 2 cut(s) 88, 254
BpiI GAAGAC 1 cut(s) 208
Bpu14I TTCGAA 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 401
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 3 cut(s) 174, 230, 385
Bsh1236I CGCG 1 cut(s) 212
BsiHKCI CYCGRG 2 cut(s) 88, 254
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 3 cut(s) 123, 185, 286
BsmBI CGTCTC 1 cut(s) 123
BsmI GAATGC 2 cut(s) 220, 506
Bso31I GGTCTC 1 cut(s) 185
BsoBI CYCGRG 2 cut(s) 88, 254
Bsp119I TTCGAA 1 cut(s) 65
Bsp143I GATC 3 cut(s) 271, 340, 388
BspFNI CGCG 1 cut(s) 212
BspMAI CTGCAG 1 cut(s) 403
BspMI ACCTGC 1 cut(s) 392
BspPI GGATC 1 cut(s) 348
BspQI GCTCTTC 1 cut(s) 240
BspT104I TTCGAA 1 cut(s) 65
BspTI CTTAAG 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 185
BssMI GATC 3 cut(s) 271, 340, 388
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst4CI ACNGT 3 cut(s) 144, 448, 648
Bst6I CTCTTC 3 cut(s) 67, 240, 480
BstAFI CTTAAG 1 cut(s) 638
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 1 cut(s) 166
BstFNI CGCG 1 cut(s) 212
BstKTI GATC 3 cut(s) 274, 343, 391
BstMAI GTCTC 3 cut(s) 123, 185, 286
BstMBI GATC 3 cut(s) 271, 340, 388
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 399
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 3 cut(s) 174, 230, 385
BstV2I GAAGAC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 546
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 573
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 474
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 1 cut(s) 166
DpnI GATC 3 cut(s) 273, 342, 390
DpnII GATC 3 cut(s) 271, 340, 388
DrdI GACNNNNNNGTC 1 cut(s) 115
DseDI GACNNNNNNGTC 1 cut(s) 115
Eam1104I CTCTTC 3 cut(s) 67, 240, 480
EarI CTCTTC 3 cut(s) 67, 240, 480
Eco31I GGTCTC 1 cut(s) 185
Eco88I CYCGRG 2 cut(s) 88, 254
Esp3I CGTCTC 1 cut(s) 123
FaiI YATR 4 cut(s) 85, 127, 158, 557
FalI AAGNNNNNCTT 2 cut(s) 288, 320
Fnu4HI GCNGC 3 cut(s) 163, 219, 399
Fsp4HI GCNGC 3 cut(s) 163, 219, 399
GluI GCNGC 3 cut(s) 163, 219, 399
HgaI GACGC 1 cut(s) 218
HinfI GANTC 2 cut(s) 223, 560
Hpy166II GTNNAC 2 cut(s) 349, 544
Hpy188I TCNGA 1 cut(s) 276
Hpy188III TCNNGA 5 cut(s) 90, 184, 227, 254, 256
Hpy8I GTNNAC 2 cut(s) 349, 544
Hpy99I CGWCG 2 cut(s) 118, 212
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 3 cut(s) 144, 448, 648
HpyCH4V TGCA 5 cut(s) 83, 218, 337, 401, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 166
Kzo9I GATC 3 cut(s) 271, 340, 388
LguI GCTCTTC 1 cut(s) 240
LpnPI CCDG 8 cut(s) 119, 323, 387, 408, 440, 495, 576, 606
Lsp1109I GCAGC 3 cut(s) 174, 230, 385
MalI GATC 3 cut(s) 273, 342, 390
MboI GATC 3 cut(s) 271, 340, 388
MboII GAAGA 8 cut(s) 34, 54, 79, 82, 210, 213, 257, 497
MflI RGATCY 1 cut(s) 340
MluCI AATT 3 cut(s) 78, 307, 511
MlyI GAGTC 1 cut(s) 569
MnlI CCTC 3 cut(s) 70, 276, 490
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 4 cut(s) 32, 306, 450, 639
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 2 cut(s) 398, 590
MspCI CTTAAG 1 cut(s) 638
Mva1269I GAATGC 2 cut(s) 220, 506
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 3 cut(s) 271, 340, 388
NspV TTCGAA 1 cut(s) 65
OliI CACNNNNGTG 1 cut(s) 539
PaeR7I CTCGAG 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 240
PctI GAATGC 2 cut(s) 220, 506
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 223
PflFI GACNNNGTC 1 cut(s) 112
PkrI GCNGC 3 cut(s) 164, 220, 400
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PstI CTGCAG 1 cut(s) 403
PsuI RGATCY 1 cut(s) 340
PsyI GACNNNGTC 1 cut(s) 112
PvuII CAGCTG 2 cut(s) 398, 590
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
RseI CAYNNNNRTG 1 cut(s) 539
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 4 cut(s) 32, 306, 450, 639
SatI GCNGC 3 cut(s) 163, 219, 399
Sau3AI GATC 3 cut(s) 271, 340, 388
SchI GAGTC 1 cut(s) 569
SfcI CTRYAG 1 cut(s) 399
Sfr274I CTCGAG 1 cut(s) 254
SfuI TTCGAA 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 2 cut(s) 254, 638
SmoI CTYRAG 2 cut(s) 254, 638
Sse9I AATT 3 cut(s) 78, 307, 511
TaaI ACNGT 3 cut(s) 144, 448, 648
TaqI TCGA 3 cut(s) 65, 255, 566
TasI AATT 3 cut(s) 78, 307, 511
TatI WGTACW 1 cut(s) 473
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 4 cut(s) 32, 306, 450, 639
Tru9I TTAA 4 cut(s) 32, 306, 450, 639
TscAI CASTG 1 cut(s) 546
TseI GCWGC 3 cut(s) 162, 218, 398
TspDTI ATGAA 4 cut(s) 12, 258, 504, 573
TspRI CASTG 1 cut(s) 546
Tth111I GACNNNGTC 1 cut(s) 112
Vha464I CTTAAG 1 cut(s) 638
XhoI CTCGAG 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.