Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011404

Physical Location & Seq

Genomic Coordinates Forward (+)

1697757 .. 1699654

Gene Structure 1898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCACAGCCTCTAGCACCTTCCTCTCTTCAACAACATTGATCTATGCCCAGAAAGTTAGTACCAGGAGACAATTGAGCTTTTGCAAAGCACAGAGTGAGTCTTCTTCTTCTTCATCATCTGGACCAGGAGGTCCAGTTGTGACCAAGAGAGGCCTGGGCATCAGCTTTGCCACCAGCCTTGTTATTTCAGTGGTTGGAGGAGGAGAGTGGTTTAAGTCCAATGCAGCAATTCTAGAAGCTGATGATGATGTGGAGCTTTTGGAGAAGGTTAAGAAAGATAGGCAGAAGAGGCTTGAAAGACAGCAAGTCATCAGCTCTGCCAAAAAAGAAACAGGAGATCTGCAGGAACTGGTGTTCAGGCTCAGCAAAGTAGGCCAGGCCCTCGATGGTAATGACTGGTCTACAGCTAGTTCTGTTCTCGGGGATAAAGATTGGGTTAAGAAGGCCAATGTAGCTTTGAATAAGCTGAGCTCTAGTCCTGAAGAGCAGACTGAGGTGGATGCATTTAATTCCTCGCTCGCTTCGTTGATATCATCAGTTGCAAAGAATGATGTAGAGTCCTCCAAACTTGCCTTTGTGTCGTCTGCTACTGCAATCGAGAAATGGACAGCACTAACCGGGCTAGGTGGCCAGCTTAAGGGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009941 GO:0009987 GO:0010033 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

22.88

Weight (kDa)

8.59

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPH2	PF20675	114 - 216	2.2e-40	Maintenance of Photosystem II under High light 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02530 AT4G02530 AT4G02530
fragaria_vesca	FvH4_1g03010
malus_domestica	MD02G1029500.v1.1 MD15G1170900.v1.1
prunus_persica	Prupe.7G245400_v2.0.a1
pyrus_communis	pycom02g02440 pycom15g15240
rosa_chinensis	RchiOBHm_Chr2g0088141
rosa_laevigata	RLG00000015925
rosa_multiflora	Rmu_co7966632.1_g000001 Rmu_sc0003275.1_g000049
rosa_roxburghii	Rroxscaffold_2G00152930
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036200 Rh2BG035400 Rh2CG036600 Rh2DG035900
rosa_wichuraiana	Rw2G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	404
AcoI	YGGCCR	2 cut(s)	3, 631
AcuI	CTGAAG	1 cut(s)	504
AdeI	CACNNNGTG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	640
AflII	CTTAAG	1 cut(s)	638
AgsI	TTSAA	3 cut(s)	33, 299, 463
AhdI	GACNNNNNGTC	1 cut(s)	308
AjnI	CCWGG	4 cut(s)	65, 127, 156, 378
AloI	GAACNNNNNNTCC	2 cut(s)	341, 373
Alw21I	GWGCWC	1 cut(s)	476
Alw26I	GTCTC	1 cut(s)	64
AlwNI	CAGNNNCTG	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	6 cut(s)	3, 154, 376, 381, 447, 631
ApeKI	GCWGC	1 cut(s)	227
AspS9I	GGNCC	3 cut(s)	125, 134, 382
AsuC2I	CCSGG	1 cut(s)	622
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	2 cut(s)	125, 134
BalI	TGGCCA	2 cut(s)	5, 633
BanII	GRGCYC	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	476
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	1 cut(s)	383
BciT130I	CCWGG	4 cut(s)	67, 129, 158, 380
BcnI	CCSGG	1 cut(s)	622
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	5 cut(s)	15, 236, 411, 477, 626
BfmI	CTRYAG	2 cut(s)	344, 405
BfrI	CTTAAG	1 cut(s)	638
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	1 cut(s)	228
BlpI	GCTNAGC	2 cut(s)	365, 470
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	5 cut(s)	67, 129, 158, 380, 622
Bme18I	GGWCC	2 cut(s)	125, 134
BmeRI	GACNNNNNGTC	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	3 cut(s)	125, 134, 382
BmrFI	CCNGG	5 cut(s)	67, 129, 158, 380, 622
BmsI	GCATC	2 cut(s)	171, 493
BpiI	GAAGAC	1 cut(s)	96
Bpu1102I	GCTNAGC	2 cut(s)	365, 470
BpuMI	CCSGG	1 cut(s)	622
BsaJI	CCNNGG	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse1I	ACTGG	3 cut(s)	137, 357, 404
BseBI	CCWGG	4 cut(s)	67, 129, 158, 380
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMII	CTCAG	3 cut(s)	379, 461, 486
BseNI	ACTGG	3 cut(s)	137, 357, 404
BseRI	GAGGAG	2 cut(s)	216, 219
BseXI	GCAGC	1 cut(s)	239
BshFI	GGCC	6 cut(s)	5, 156, 378, 383, 449, 633
BsiHKAI	GWGCWC	1 cut(s)	476
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	640
BsmAI	GTCTC	1 cut(s)	64
BsnI	GGCC	6 cut(s)	5, 156, 378, 383, 449, 633
BsoBI	CYCGRG	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp143I	GATC	2 cut(s)	42, 340
Bsp1720I	GCTNAGC	2 cut(s)	365, 470
BspANI	GGCC	6 cut(s)	5, 156, 378, 383, 449, 633
BspCNI	CTCAG	3 cut(s)	378, 462, 487
BspMAI	CTGCAG	1 cut(s)	348
BspQI	GCTCTTC	1 cut(s)	480
BspTI	CTTAAG	1 cut(s)	638
BsrI	ACTGG	3 cut(s)	137, 357, 404
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	2 cut(s)	42, 340
Bst2UI	CCWGG	4 cut(s)	67, 129, 158, 380
Bst6I	CTCTTC	3 cut(s)	34, 284, 480
BstAFI	CTTAAG	1 cut(s)	638
BstC8I	GCNNGC	2 cut(s)	522, 635
BstDEI	CTNAG	3 cut(s)	365, 470, 495
BstF5I	GGATG	1 cut(s)	508
BstKTI	GATC	2 cut(s)	45, 343
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	2 cut(s)	42, 340
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 375, 455
BstNI	CCWGG	4 cut(s)	67, 129, 158, 380
BstSCI	CCNGG	5 cut(s)	65, 127, 156, 378, 620
BstSFI	CTRYAG	2 cut(s)	344, 405
BstV1I	GCAGC	1 cut(s)	239
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuRI	GGCC	6 cut(s)	5, 156, 378, 383, 449, 633
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	522, 635
CaiI	CAGNNNCTG	1 cut(s)	352
Cfr13I	GGNCC	3 cut(s)	125, 134, 382
Csp6I	GTAC	1 cut(s)	63
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	3 cut(s)	365, 470, 495
DpnI	GATC	2 cut(s)	44, 342
DpnII	GATC	2 cut(s)	42, 340
DraIII	CACNNNGTG	1 cut(s)	98
DrdI	GACNNNNNNGTC	1 cut(s)	132
DriI	GACNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	132
EaeI	YGGCCR	2 cut(s)	3, 631
Eam1104I	CTCTTC	3 cut(s)	34, 284, 480
Eam1105I	GACNNNNNGTC	1 cut(s)	308
EarI	CTCTTC	3 cut(s)	34, 284, 480
Ecl136II	GAGCTC	1 cut(s)	474
Eco147I	AGGCCT	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	476
Eco32I	GATATC	1 cut(s)	534
Eco47I	GGWCC	2 cut(s)	125, 134
Eco53kI	GAGCTC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	474
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRII	CCWGG	4 cut(s)	65, 127, 156, 378
EcoRV	GATATC	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	476
FaiI	YATR	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	5 cut(s)	15, 236, 411, 477, 626
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	6 cut(s)	5, 156, 378, 383, 449, 633
HapII	CCGG	1 cut(s)	621
HinfI	GANTC	2 cut(s)	101, 560
HpaII	CCGG	1 cut(s)	621
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188III	TCNNGA	4 cut(s)	123, 236, 482, 601
Hpy8I	GTNNAC	1 cut(s)	405
HpyAV	CCTTC	3 cut(s)	31, 262, 439
HpyCH4V	TGCA	6 cut(s)	87, 227, 346, 506, 545, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 375, 455
HpyF3I	CTNAG	3 cut(s)	365, 470, 495
Kzo9I	GATC	2 cut(s)	42, 340
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	1 cut(s)	239
LweI	GCATC	2 cut(s)	171, 493
MaeI	CTAG	5 cut(s)	15, 236, 411, 477, 626
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	2 cut(s)	44, 342
MboI	GATC	2 cut(s)	42, 340
MboII	GAAGA	7 cut(s)	21, 96, 99, 102, 105, 301, 497
MfeI	CAATTG	1 cut(s)	74
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	476
MlsI	TGGCCA	2 cut(s)	5, 633
MluCI	AATT	3 cut(s)	74, 231, 511
MluNI	TGGCCA	2 cut(s)	5, 633
MlyI	GAGTC	2 cut(s)	110, 569
MmeI	TCCRAC	1 cut(s)	178
Mox20I	TGGCCA	2 cut(s)	5, 633
Mph1103I	ATGCAT	1 cut(s)	508
MscI	TGGCCA	2 cut(s)	5, 633
MseI	TTAA	6 cut(s)	216, 273, 441, 510, 639, 649
Msp20I	TGGCCA	2 cut(s)	5, 633
MspCI	CTTAAG	1 cut(s)	638
MspI	CCGG	1 cut(s)	621
MspR9I	CCNGG	5 cut(s)	67, 129, 158, 380, 622
MunI	CAATTG	1 cut(s)	74
MvaI	CCWGG	4 cut(s)	67, 129, 158, 380
MwoI	GCNNNNNNNGC	3 cut(s)	292, 375, 455
NciI	CCSGG	1 cut(s)	622
NdeII	GATC	2 cut(s)	42, 340
NmuCI	GTSAC	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	508
PceI	AGGCCT	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	524
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	2 cut(s)	109, 568
PpsI	GAGTC	2 cut(s)	109, 568
Psp124BI	GAGCTC	1 cut(s)	476
Psp6I	CCWGG	4 cut(s)	65, 127, 156, 378
PspGI	CCWGG	4 cut(s)	65, 127, 156, 378
PspPI	GGNCC	3 cut(s)	125, 134, 382
PstI	CTGCAG	1 cut(s)	348
PstNI	CAGNNNCTG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	476
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	6 cut(s)	216, 273, 441, 510, 639, 649
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	2 cut(s)	42, 340
Sau96I	GGNCC	3 cut(s)	125, 134, 382
SchI	GAGTC	2 cut(s)	110, 569
ScrFI	CCNGG	5 cut(s)	67, 129, 158, 380, 622
SduI	GDGCHC	1 cut(s)	476
SfaNI	GCATC	2 cut(s)	171, 493
SfcI	CTRYAG	2 cut(s)	344, 405
SinI	GGWCC	2 cut(s)	125, 134
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	3 cut(s)	74, 231, 511
SseBI	AGGCCT	1 cut(s)	156
SspMI	CTAG	5 cut(s)	15, 236, 411, 477, 626
SstI	GAGCTC	1 cut(s)	476
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	5 cut(s)	65, 127, 156, 378, 620
TaqI	TCGA	2 cut(s)	387, 600
TasI	AATT	3 cut(s)	74, 231, 511
Tru1I	TTAA	6 cut(s)	216, 273, 441, 510, 639, 649
Tru9I	TTAA	6 cut(s)	216, 273, 441, 510, 639, 649
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	198
Vha464I	CTTAAG	1 cut(s)	638
VpaK11BI	GGWCC	2 cut(s)	125, 134
XbaI	TCTAGA	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	2 cut(s)	154, 386
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	5 cut(s)	15, 236, 411, 477, 626
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.