Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011404

Physical Location & Seq

Genomic Coordinates Forward (+)

13210607 .. 13212603

Gene Structure 1997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1170900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCCACAGCCATTCTCTCCACTGCAAAATCCTTCCTCCCTCCAACCCTTTCCTCCTCAGCATCTTCTGTTACTTCTTCTTCTTCACTGACAACACCACCAACATTAATCCATGTCCAAAAAACAAGTACAAGGAGAGGATTGACTATTTGTAAGGCCCTGAGTGAAGAGCCACGCTCACCTGCTCCAATCCTCACCAAAAGAAGCCTGTCCATCTGCTTTCTCAACAGCTTTGCCTTCTCATTGGTTGGCAAAGATTTCAGCAGTTCTAATGCAGCAATTCTGGAAGCTGATGATGATGAGGAGCTGTTGGAGAAGGTTAAGAAGGACAGGAAGAAGAGGCTTGAAAGGCAAGGAGTACTCAGCTCATCAAAGAAAGAAACAGGATATCTGCAGGAACTTGTGTACCGGCTAAGCAAAGCAGGCCAGGCCATTGAAAGTAACGATTTGCCTGCAGCCAGTTCGGTTCTTGGAGTCAGCACTGACACAGATTGGGTTCAGAAGGCGAACCTCGCTTTGAATAAGCTAAGCTCTAGCCGTGAAGAGAAGACTGAGGTGGATACATTCAACTCCTCACTAGCTTCATTGATATCATCAGTTACGCGGAATGATGTAGAGTCCTCCAAGCTAGCATTTGTGTCTTCTGCCAGTGCAATTGAGAAATGGACAACATTAACCGGGCTCATTGACCAGCTTAAGGGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009941 GO:0009987 GO:0010033 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

25.25

Weight (kDa)

8.8

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPH2	PF20675	130 - 235	1.3e-45	Maintenance of Photosystem II under High light 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02530 AT4G02530 AT4G02530
fragaria_vesca	FvH4_1g03010
malus_domestica	MD02G1029500.v1.1 MD15G1170900.v1.1
prunus_persica	Prupe.7G245400_v2.0.a1
pyrus_communis	pycom02g02440 pycom15g15240
rosa_chinensis	RchiOBHm_Chr2g0088141
rosa_laevigata	RLG00000015925
rosa_multiflora	Rmu_co7966632.1_g000001 Rmu_sc0003275.1_g000049
rosa_roxburghii	Rroxscaffold_2G00152930
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036200 Rh2BG035400 Rh2CG036600 Rh2DG035900
rosa_wichuraiana	Rw2G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	190
Acc36I	ACCTGC	1 cut(s)	190
AccII	CGCG	1 cut(s)	604
AciI	CCGC	1 cut(s)	604
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	130, 360, 407
AfiI	CCNNNNNNNGG	1 cut(s)	697
AflII	CTTAAG	1 cut(s)	695
AgsI	TTSAA	4 cut(s)	347, 437, 520, 568
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	9 cut(s)	231, 290, 307, 366, 526, 531, 581, 628, 694
AluI	AGCT	9 cut(s)	231, 290, 307, 366, 526, 531, 581, 628, 694
AoxI	GGCC	4 cut(s)	3, 156, 424, 429
ApeKI	GCWGC	2 cut(s)	275, 455
AseI	ATTAAT	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	679
AsuHPI	GGTGA	2 cut(s)	171, 187
AsuNHI	GCTAGC	1 cut(s)	628
BaeI	ACNNNNGTAYC	2 cut(s)	389, 422
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	684
BbsI	GAAGAC	2 cut(s)	554, 633
BbvCI	CCTCAGC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	287, 467
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	522
BcgI	CGANNNNNNTGC	4 cut(s)	434, 444, 468, 478
BciT130I	CCWGG	1 cut(s)	428
BciVI	GTATCC	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	679
BfaI	CTAG	3 cut(s)	534, 578, 629
BfmI	CTRYAG	2 cut(s)	392, 453
BfrI	CTTAAG	1 cut(s)	695
BfuAI	ACCTGC	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	553
BisI	GCNGC	2 cut(s)	276, 456
BlpI	GCTNAGC	2 cut(s)	413, 527
BlsI	GCNGC	2 cut(s)	277, 457
BmcAI	AGTACT	1 cut(s)	360
Bme1390I	CCNGG	2 cut(s)	428, 679
BmgT120I	GGNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	428, 679
BmsI	GCATC	1 cut(s)	71
BmtI	GCTAGC	1 cut(s)	632
BpiI	GAAGAC	2 cut(s)	554, 633
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
Bpu10I	CCTNAGC	1 cut(s)	58
Bpu1102I	GCTNAGC	2 cut(s)	413, 527
BpuMI	CCSGG	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse118I	RCCGGY	1 cut(s)	408
Bse1I	ACTGG	2 cut(s)	459, 648
BseBI	CCWGG	1 cut(s)	428
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMII	CTCAG	4 cut(s)	72, 152, 376, 543
BseNI	ACTGG	2 cut(s)	459, 648
BseRI	GAGGAG	3 cut(s)	46, 317, 562
BseXI	GCAGC	2 cut(s)	287, 467
Bsh1236I	CGCG	1 cut(s)	604
BshFI	GGCC	4 cut(s)	5, 158, 426, 431
BsiSI	CCGG	2 cut(s)	409, 678
BslI	CCNNNNNNNGG	1 cut(s)	697
BsnI	GGCC	4 cut(s)	5, 158, 426, 431
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp1720I	GCTNAGC	2 cut(s)	413, 527
BspACI	CCGC	1 cut(s)	604
BspANI	GGCC	4 cut(s)	5, 158, 426, 431
BspCNI	CTCAG	4 cut(s)	71, 153, 375, 544
BspFNI	CGCG	1 cut(s)	604
BspMAI	CTGCAG	2 cut(s)	396, 457
BspMI	ACCTGC	1 cut(s)	190
BspOI	GCTAGC	1 cut(s)	632
BspQI	GCTCTTC	1 cut(s)	162
BspTI	CTTAAG	1 cut(s)	695
BsrFI	RCCGGY	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	459, 648
BssAI	RCCGGY	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	428
Bst6I	CTCTTC	3 cut(s)	162, 332, 537
BstAFI	CTTAAG	1 cut(s)	695
BstC8I	GCNNGC	3 cut(s)	424, 453, 630
BstDEI	CTNAG	6 cut(s)	58, 161, 362, 413, 527, 552
BstFNI	CGCG	1 cut(s)	604
BstMWI	GCNNNNNNNGC	4 cut(s)	349, 423, 428, 512
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	2 cut(s)	426, 677
BstSFI	CTRYAG	2 cut(s)	392, 453
BstUI	CGCG	1 cut(s)	604
BstV1I	GCAGC	2 cut(s)	287, 467
BstV2I	GAAGAC	2 cut(s)	554, 633
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	4 cut(s)	5, 158, 426, 431
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	4 cut(s)	21, 86, 480, 655
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	424, 453, 630
Cfr10I	RCCGGY	1 cut(s)	408
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	3 cut(s)	129, 359, 406
CviAII	CATG	1 cut(s)	113
CviQI	GTAC	3 cut(s)	129, 359, 406
DdeI	CTNAG	6 cut(s)	58, 161, 362, 413, 527, 552
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	162, 332, 537
EarI	CTCTTC	3 cut(s)	162, 332, 537
Eco24I	GRGCYC	1 cut(s)	684
Eco32I	GATATC	2 cut(s)	389, 591
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	426
EcoRV	GATATC	2 cut(s)	389, 591
EcoT38I	GRGCYC	1 cut(s)	684
FaeI	CATG	1 cut(s)	116
FaiI	YATR	1 cut(s)	114
FatI	CATG	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	276, 456
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	2 cut(s)	276, 456
FspBI	CTAG	3 cut(s)	534, 578, 629
GluI	GCNGC	2 cut(s)	276, 456
HaeIII	GGCC	4 cut(s)	5, 158, 426, 431
HapII	CCGG	2 cut(s)	409, 678
Hin1II	CATG	1 cut(s)	116
HinfI	GANTC	2 cut(s)	474, 617
HpaII	CCGG	2 cut(s)	409, 678
HphI	GGTGA	2 cut(s)	171, 187
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	1 cut(s)	501
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	5 cut(s)	43, 247, 310, 319, 496
HpyCH4V	TGCA	5 cut(s)	26, 275, 394, 455, 653
HpyF10VI	GCNNNNNNNGC	4 cut(s)	349, 423, 428, 512
HpyF3I	CTNAG	6 cut(s)	58, 161, 362, 413, 527, 552
Hsp92II	CATG	1 cut(s)	116
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	2 cut(s)	190, 304
Lsp1109I	GCAGC	2 cut(s)	287, 467
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	3 cut(s)	534, 578, 629
MaeIII	GTNAC	3 cut(s)	70, 440, 598
MfeI	CAATTG	1 cut(s)	654
MhlI	GDGCHC	1 cut(s)	684
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	279, 654
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	483, 626
MmeI	TCCRAC	2 cut(s)	68, 291
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	107, 321, 674, 696, 706
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	2 cut(s)	409, 678
MspR9I	CCNGG	2 cut(s)	428, 679
MunI	CAATTG	1 cut(s)	654
MvaI	CCWGG	1 cut(s)	428
MvnI	CGCG	1 cut(s)	604
MwoI	GCNNNNNNNGC	4 cut(s)	349, 423, 428, 512
NciI	CCSGG	1 cut(s)	679
NheI	GCTAGC	1 cut(s)	628
NlaIII	CATG	1 cut(s)	116
PaqCI	CACCTGC	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	277, 457
PleI	GAGTC	2 cut(s)	482, 625
PpsI	GAGTC	2 cut(s)	482, 625
PshBI	ATTAAT	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	157
PstI	CTGCAG	2 cut(s)	396, 457
RsaI	GTAC	3 cut(s)	130, 360, 407
RsaNI	GTAC	3 cut(s)	129, 359, 406
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	5 cut(s)	107, 321, 674, 696, 706
SatI	GCNGC	2 cut(s)	276, 456
Sau96I	GGNCC	1 cut(s)	157
ScaI	AGTACT	1 cut(s)	360
SchI	GAGTC	2 cut(s)	483, 626
ScrFI	CCNGG	2 cut(s)	428, 679
SduI	GDGCHC	1 cut(s)	684
SfaNI	GCATC	1 cut(s)	71
SfcI	CTRYAG	2 cut(s)	392, 453
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
Sse9I	AATT	2 cut(s)	279, 654
SsiI	CCGC	1 cut(s)	604
SspMI	CTAG	3 cut(s)	534, 578, 629
StyD4I	CCNGG	2 cut(s)	426, 677
TasI	AATT	2 cut(s)	279, 654
TatI	WGTACW	2 cut(s)	128, 358
Tru1I	TTAA	5 cut(s)	107, 321, 674, 696, 706
Tru9I	TTAA	5 cut(s)	107, 321, 674, 696, 706
TscAI	CASTG	4 cut(s)	28, 93, 487, 655
TseI	GCWGC	2 cut(s)	275, 455
TspDTI	ATGAA	1 cut(s)	573
TspRI	CASTG	4 cut(s)	28, 93, 487, 655
Vha464I	CTTAAG	1 cut(s)	695
VspI	ATTAAT	1 cut(s)	107
XspI	CTAG	3 cut(s)	534, 578, 629
ZrmI	AGTACT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.