Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7966632.1

Orthogroup ID

OG0011404

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 498

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7966632.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ctgagctctagtcctgaagagcagacagaggtggatgcattcaattcctcactagcttcattgatatcatcagttacaaagaatgatgtagagtcctccaaacttgcgtttgtgtcgtctgccagtgcaatcgagaaatggacagcattaaccgggctagttgaccagcttaagggactttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009941 GO:0009987 GO:0010033 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

60

Amino Acids

6.29

Weight (kDa)

4.33

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02530 AT4G02530 AT4G02530
fragaria_vesca	FvH4_1g03010
malus_domestica	MD02G1029500.v1.1 MD15G1170900.v1.1
prunus_persica	Prupe.7G245400_v2.0.a1
pyrus_communis	pycom02g02440 pycom15g15240
rosa_chinensis	RchiOBHm_Chr2g0088141
rosa_laevigata	RLG00000015925
rosa_multiflora	Rmu_co7966632.1_g000001 Rmu_sc0003275.1_g000049
rosa_roxburghii	Rroxscaffold_2G00152930
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036200 Rh2BG035400 Rh2CG036600 Rh2DG035900
rosa_wichuraiana	Rw2G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	3 cut(s)	6, 56, 169
AluI	AGCT	3 cut(s)	6, 56, 169
Alw21I	GWGCWC	1 cut(s)	8
AsuC2I	CCSGG	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BcnI	CCSGG	1 cut(s)	154
BfaI	CTAG	3 cut(s)	9, 53, 158
BfrI	CTTAAG	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	8
BspQI	GCTCTTC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	12
BstAFI	CTTAAG	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	2
BstF5I	GGATG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	130
CviJI	RGCY	4 cut(s)	6, 56, 157, 169
CviKI_1	RGCY	4 cut(s)	6, 56, 157, 169
DdeI	CTNAG	1 cut(s)	2
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	8
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	3 cut(s)	9, 53, 158
HapII	CCGG	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	14, 133
Hpy8I	GTNNAC	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	38, 128
HpyF3I	CTNAG	1 cut(s)	2
LguI	GCTCTTC	1 cut(s)	12
LpnPI	CCDG	4 cut(s)	27, 136, 166, 179
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	3 cut(s)	9, 53, 158
MaeIII	GTNAC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	3 cut(s)	22, 58, 106
Mph1103I	ATGCAT	1 cut(s)	40
MseI	TTAA	3 cut(s)	149, 171, 181
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	154
Mva1269I	GAATGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	40
PciSI	GCTCTTC	1 cut(s)	12
PctI	GAATGC	1 cut(s)	38
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	8
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	149, 171, 181
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	4 cut(s)	8, 33, 58, 171
SfaNI	GCATC	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	43
SspMI	CTAG	3 cut(s)	9, 53, 158
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	152
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	43
Tru1I	TTAA	3 cut(s)	149, 171, 181
Tru9I	TTAA	3 cut(s)	149, 171, 181
TscAI	CASTG	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	170
XspI	CTAG	3 cut(s)	9, 53, 158
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.