Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0011404

Physical Location & Seq

Genomic Coordinates Reverse (-)

20926006 .. 20928146

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G245400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCCACAGCCATTCTCTCTACTGCAAACACCTTCCTCCCTTCAACTCTGTCCTCTTCTCCATCCTCTGTTGTTTCTTCTTCATTGACAATACCAACATTAGTTTGTTTCCAAAATCGAAATGGCAAGAGACCATTCGCTGTTTGCAAGGCCCTGAGTGAACCACCACAATCAGCTTCTCCAATTCTGACCAAAAGAAGCCTCTCTATCTGCTTTGTCACCAGCTTTGTCTTCTCATTGGTTGGTAAAGACTGCTCCAGTTCTAATGCAGCAATTCTAGAAGCTGATGATGATGAGGAGCTCTTGGAAAAGGTTAAAAGGGATAGAAAGAAGAGGCTTGAAAGACAGGGAGTTATCAGCTCAGCCAAAAAAGAAACAGGATATCTGCAGGAACTGGTGTACAGGCTCAGCAAAGCAGGCCAAGCTATTGAAAGCAACGATTTGCCAACAGCGAGTTCAGTTCTTGGGGCCAGCACAGATACAGATTGGGTTCAGAAGGCCAATATTGCTTTGAATAAGCTAAGCTCTAGTCCTGAAGAGAAGACTGAGGTGGATACTTTCAATTCATCCTTGGCTTCATTGATATCATCAGTTACTCGGAATGATATAGATTCCTCCAAACTTGCTTTTGTGTCTTCTGCCAACGCAATTGAGAAATGGACATCATTAACCGGGCTTATTGACCAGCTTAAGGGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009941 GO:0009987 GO:0010033 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

24.97

Weight (kDa)

7.58

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02530 AT4G02530 AT4G02530
fragaria_vesca	FvH4_1g03010
malus_domestica	MD02G1029500.v1.1 MD15G1170900.v1.1
prunus_persica	Prupe.7G245400_v2.0.a1
pyrus_communis	pycom02g02440 pycom15g15240
rosa_chinensis	RchiOBHm_Chr2g0088141
rosa_laevigata	RLG00000015925
rosa_multiflora	Rmu_co7966632.1_g000001 Rmu_sc0003275.1_g000049
rosa_roxburghii	Rroxscaffold_2G00152930
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036200 Rh2BG035400 Rh2CG036600 Rh2DG035900
rosa_wichuraiana	Rw2G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	691
AflII	CTTAAG	1 cut(s)	689
AgsI	TTSAA	5 cut(s)	45, 341, 431, 514, 562
AjuI	GAANNNNNNNTTGG	2 cut(s)	439, 471
AluBI	AGCT	9 cut(s)	176, 225, 284, 301, 360, 425, 520, 525, 688
AluI	AGCT	9 cut(s)	176, 225, 284, 301, 360, 425, 520, 525, 688
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	124
AlwNI	CAGNNNCTG	1 cut(s)	394
AoxI	GGCC	5 cut(s)	3, 150, 418, 468, 498
ApeKI	GCWGC	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	151, 468
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	3 cut(s)	223, 548, 627
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	1 cut(s)	70
BciVI	GTATCC	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	2 cut(s)	278, 528
BfmI	CTRYAG	1 cut(s)	386
BfrI	CTTAAG	1 cut(s)	689
BfuI	GTATCC	1 cut(s)	547
BisI	GCNGC	1 cut(s)	270
BlpI	GCTNAGC	3 cut(s)	361, 407, 521
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	673
BmgT120I	GGNCC	2 cut(s)	151, 468
BmiI	GGNNCC	1 cut(s)	469
BmrFI	CCNGG	1 cut(s)	673
BpiI	GAAGAC	3 cut(s)	223, 548, 627
BpmI	CTGGAG	1 cut(s)	241
Bpu1102I	GCTNAGC	3 cut(s)	361, 407, 521
BpuMI	CCSGG	1 cut(s)	673
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	570
Bsc4I	CCNNNNNNNGG	1 cut(s)	691
Bse1I	ACTGG	2 cut(s)	258, 399
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	2 cut(s)	62, 566
BseLI	CCNNNNNNNGG	1 cut(s)	691
BseMII	CTCAG	4 cut(s)	146, 375, 421, 537
BseNI	ACTGG	2 cut(s)	258, 399
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	281
BshFI	GGCC	5 cut(s)	5, 152, 420, 470, 500
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	672
BslI	CCNNNNNNNGG	1 cut(s)	691
BsmAI	GTCTC	1 cut(s)	124
BsnI	GGCC	5 cut(s)	5, 152, 420, 470, 500
Bso31I	GGTCTC	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp1407I	TGTACA	1 cut(s)	399
Bsp1720I	GCTNAGC	3 cut(s)	361, 407, 521
BspANI	GGCC	5 cut(s)	5, 152, 420, 470, 500
BspCNI	CTCAG	4 cut(s)	147, 374, 420, 538
BspLI	GGNNCC	1 cut(s)	469
BspMAI	CTGCAG	1 cut(s)	390
BspTI	CTTAAG	1 cut(s)	689
BspTNI	GGTCTC	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	258, 399
BssECI	CCNNGG	1 cut(s)	570
BssT1I	CCWWGG	1 cut(s)	570
Bst6I	CTCTTC	3 cut(s)	61, 326, 531
BstAFI	CTTAAG	1 cut(s)	689
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	418, 472
BstDEI	CTNAG	5 cut(s)	155, 361, 407, 521, 546
BstF5I	GGATG	2 cut(s)	62, 566
BstMAI	GTCTC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	417, 422, 506
BstSCI	CCNGG	1 cut(s)	671
BstSFI	CTRYAG	1 cut(s)	386
BstV1I	GCAGC	1 cut(s)	281
BstV2I	GAAGAC	3 cut(s)	223, 548, 627
BsuI	GTATCC	1 cut(s)	547
BsuRI	GGCC	5 cut(s)	5, 152, 420, 470, 500
BtsCI	GGATG	2 cut(s)	62, 566
Cac8I	GCNNGC	2 cut(s)	418, 472
CaiI	CAGNNNCTG	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	151, 468
Csp6I	GTAC	1 cut(s)	400
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	5 cut(s)	155, 361, 407, 521, 546
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	61, 326, 531
EarI	CTCTTC	3 cut(s)	61, 326, 531
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	124
Eco32I	GATATC	2 cut(s)	383, 585
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	555
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRV	GATATC	2 cut(s)	383, 585
EcoT14I	CCWWGG	1 cut(s)	570
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	570
FaiI	YATR	1 cut(s)	608
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	2 cut(s)	49, 553
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	2 cut(s)	278, 528
GluI	GCNGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	241
HaeIII	GGCC	5 cut(s)	5, 152, 420, 470, 500
HapII	CCGG	1 cut(s)	672
HinfI	GANTC	1 cut(s)	611
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	2 cut(s)	161, 400
Hpy188I	TCNGA	3 cut(s)	189, 495, 600
Hpy188III	TCNNGA	2 cut(s)	278, 533
Hpy8I	GTNNAC	2 cut(s)	161, 400
HpyAV	CCTTC	3 cut(s)	43, 51, 490
HpyCH4V	TGCA	4 cut(s)	26, 147, 269, 388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	417, 422, 506
HpyF3I	CTNAG	5 cut(s)	155, 361, 407, 521, 546
LmnI	GCTCC	2 cut(s)	260, 298
Lsp1109I	GCAGC	1 cut(s)	281
MaeI	CTAG	2 cut(s)	278, 528
MaeIII	GTNAC	2 cut(s)	217, 592
MboII	GAAGA	8 cut(s)	48, 69, 72, 223, 343, 548, 553, 627
MfeI	CAATTG	1 cut(s)	648
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	183, 273, 562, 648
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	8 cut(s)	47, 64, 76, 212, 289, 327, 541, 625
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	315, 668, 690, 700
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	689
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	1 cut(s)	673
MunI	CAATTG	1 cut(s)	648
MwoI	GCNNNNNNNGC	3 cut(s)	417, 422, 506
NciI	CCSGG	1 cut(s)	673
NlaIV	GGNNCC	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	611
PkrI	GCNGC	1 cut(s)	271
Psp124BI	GAGCTC	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	469
PspPI	GGNCC	2 cut(s)	151, 468
PstI	CTGCAG	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	394
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	4 cut(s)	315, 668, 690, 700
SatI	GCNGC	1 cut(s)	270
Sau96I	GGNCC	2 cut(s)	151, 468
ScrFI	CCNGG	1 cut(s)	673
SduI	GDGCHC	1 cut(s)	303
SfcI	CTRYAG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	4 cut(s)	183, 273, 562, 648
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	2 cut(s)	278, 528
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	671
StyI	CCWWGG	1 cut(s)	570
TaqI	TCGA	1 cut(s)	118
TasI	AATT	4 cut(s)	183, 273, 562, 648
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	4 cut(s)	315, 668, 690, 700
Tru9I	TTAA	4 cut(s)	315, 668, 690, 700
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	72, 555, 567
Vha464I	CTTAAG	1 cut(s)	689
XbaI	TCTAGA	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XspI	CTAG	2 cut(s)	278, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.