Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0011404

Physical Location & Seq

Genomic Coordinates Forward (+)

1511284 .. 1512914

Gene Structure 1631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCCACAGCCATTCTCTCCACTGCAAAATCCTTCCTCCCTTCCTCTTCTGTTACTCTTCCTTCTTCACTGACAACAACACCGACATTAATTCATGTCCAAAAAACAAGTACAAGTAGAGGATTGACTTTTTGTCAGGCCCTTAGTGAAGAGCCGCAATCACCTGCTCCAATCCTCACCAAAAGAAGCCTGTCCATCTGCTTTCTCACCAGCTTTGCCTTCTCATTGGTTGGCAAAGATTTCAGCAGTTCTAATGCAGCAATTCTGGAAGCTGATGATGACGAGGAACTGTTGGAGAAGGTTAAGAAGGACAGGAAGAAGAGGCTTGAAAGGCAAGGAGTTCTCAGCTCATCAAAGAAAGAAACAGGTTTTCTGCAGGAACTGGTGTACAGGCTGAGCAAAGCAGGCCAAGCCATTGAAAGTAACGACTTGCCTGCAGCCAGTTCGGTTCTTGGGGGCAGCACTGACACAGATTGGGTTCAGAAGGCGAATATCGCTTTGGATAAGCTAAGCTCTAGCCCTGAAGAGAAGACTGAGGTGGATACATTCAACTCCTCACTAGCTTCATTGATATTATCTGTAACCCGGAACGATGTGGAGTCCTCCAAGCTTGCTTTTGTGTCTTCTGCAAGTGCAATTGAGAAATGGACGACATTAACCGGGCTCATTGACCAGCTTAAGGGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009941 GO:0009987 GO:0010033 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

24.57

Weight (kDa)

5.6

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02530 AT4G02530 AT4G02530
fragaria_vesca	FvH4_1g03010
malus_domestica	MD02G1029500.v1.1 MD15G1170900.v1.1
prunus_persica	Prupe.7G245400_v2.0.a1
pyrus_communis	pycom02g02440 pycom15g15240
rosa_chinensis	RchiOBHm_Chr2g0088141
rosa_laevigata	RLG00000015925
rosa_multiflora	Rmu_co7966632.1_g000001 Rmu_sc0003275.1_g000049
rosa_roxburghii	Rroxscaffold_2G00152930
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036200 Rh2BG035400 Rh2CG036600 Rh2DG035900
rosa_wichuraiana	Rw2G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	172
Acc36I	ACCTGC	1 cut(s)	172
AciI	CCGC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	2 cut(s)	112, 389
AfiI	CCNNNNNNNGG	1 cut(s)	679
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	3 cut(s)	329, 419, 550
AhdI	GACNNNNNGTC	1 cut(s)	132
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	8 cut(s)	213, 272, 348, 508, 513, 563, 610, 676
AluI	AGCT	8 cut(s)	213, 272, 348, 508, 513, 563, 610, 676
AlwNI	CAGNNNCTG	1 cut(s)	382
AoxI	GGCC	3 cut(s)	3, 138, 406
ApeKI	GCWGC	3 cut(s)	257, 437, 459
AseI	ATTAAT	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	2 cut(s)	586, 661
AsuHPI	GGTGA	3 cut(s)	153, 169, 199
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	666
BbsI	GAAGAC	2 cut(s)	536, 615
BbvI	GCAGC	3 cut(s)	269, 449, 471
BccI	CCATC	1 cut(s)	203
BcgI	CGANNNNNNTGC	4 cut(s)	416, 426, 450, 460
BciVI	GTATCC	1 cut(s)	535
BcnI	CCSGG	2 cut(s)	586, 661
BfaI	CTAG	2 cut(s)	516, 560
BfmI	CTRYAG	2 cut(s)	374, 435
BfrI	CTTAAG	1 cut(s)	677
BfuAI	ACCTGC	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	535
BisI	GCNGC	4 cut(s)	155, 258, 438, 460
BlpI	GCTNAGC	2 cut(s)	395, 509
BlsI	GCNGC	4 cut(s)	156, 259, 439, 461
Bme1390I	CCNGG	2 cut(s)	586, 661
BmeRI	GACNNNNNGTC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	586, 661
BpiI	GAAGAC	2 cut(s)	536, 615
Bpu1102I	GCTNAGC	2 cut(s)	395, 509
BpuMI	CCSGG	2 cut(s)	586, 661
Bsc4I	CCNNNNNNNGG	1 cut(s)	679
Bse1I	ACTGG	2 cut(s)	387, 441
BseLI	CCNNNNNNNGG	1 cut(s)	679
BseMII	CTCAG	3 cut(s)	358, 386, 525
BseNI	ACTGG	2 cut(s)	387, 441
BseRI	GAGGAG	1 cut(s)	544
BseXI	GCAGC	3 cut(s)	269, 449, 471
BshFI	GGCC	3 cut(s)	5, 140, 408
BsiSI	CCGG	2 cut(s)	586, 660
BslI	CCNNNNNNNGG	1 cut(s)	679
BsnI	GGCC	3 cut(s)	5, 140, 408
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp1407I	TGTACA	1 cut(s)	387
Bsp1720I	GCTNAGC	2 cut(s)	395, 509
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	3 cut(s)	5, 140, 408
BspCNI	CTCAG	3 cut(s)	357, 387, 526
BspMAI	CTGCAG	2 cut(s)	378, 439
BspMI	ACCTGC	1 cut(s)	172
BspQI	GCTCTTC	1 cut(s)	144
BspTI	CTTAAG	1 cut(s)	677
BsrGI	TGTACA	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	387, 441
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	5 cut(s)	52, 63, 144, 314, 519
BstAFI	CTTAAG	1 cut(s)	677
BstAUI	TGTACA	1 cut(s)	387
BstC8I	GCNNGC	3 cut(s)	406, 435, 612
BstDEI	CTNAG	5 cut(s)	143, 344, 395, 509, 534
BstMWI	GCNNNNNNNGC	4 cut(s)	331, 405, 410, 494
BstSCI	CCNGG	2 cut(s)	584, 659
BstSFI	CTRYAG	2 cut(s)	374, 435
BstV1I	GCAGC	3 cut(s)	269, 449, 471
BstV2I	GAAGAC	2 cut(s)	536, 615
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	3 cut(s)	5, 140, 408
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	21, 68, 462
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	3 cut(s)	406, 435, 612
CaiI	CAGNNNCTG	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	111, 388
CviAII	CATG	1 cut(s)	95
CviQI	GTAC	2 cut(s)	111, 388
DdeI	CTNAG	5 cut(s)	143, 344, 395, 509, 534
DriI	GACNNNNNGTC	1 cut(s)	132
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	52, 63, 144, 314, 519
Eam1105I	GACNNNNNGTC	1 cut(s)	132
EarI	CTCTTC	5 cut(s)	52, 63, 144, 314, 519
Eco24I	GRGCYC	1 cut(s)	666
Eco57I	CTGAAG	1 cut(s)	543
EcoO109I	RGGNCCY	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	666
FaeI	CATG	1 cut(s)	98
FaiI	YATR	1 cut(s)	96
FatI	CATG	1 cut(s)	94
Fnu4HI	GCNGC	4 cut(s)	155, 258, 438, 460
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	4 cut(s)	155, 258, 438, 460
FspBI	CTAG	2 cut(s)	516, 560
GluI	GCNGC	4 cut(s)	155, 258, 438, 460
HaeIII	GGCC	3 cut(s)	5, 140, 408
HapII	CCGG	2 cut(s)	586, 660
Hin1II	CATG	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	1 cut(s)	599
HpaII	CCGG	2 cut(s)	586, 660
HphI	GGTGA	3 cut(s)	153, 169, 199
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	1 cut(s)	483
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	7 cut(s)	43, 51, 72, 229, 292, 301, 478
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4V	TGCA	6 cut(s)	26, 257, 376, 437, 629, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	331, 405, 410, 494
HpyF3I	CTNAG	5 cut(s)	143, 344, 395, 509, 534
Hsp92II	CATG	1 cut(s)	98
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	3 cut(s)	269, 449, 471
MaeI	CTAG	2 cut(s)	516, 560
MaeIII	GTNAC	3 cut(s)	52, 422, 580
MboII	GAAGA	9 cut(s)	39, 50, 57, 161, 328, 331, 536, 541, 615
MfeI	CAATTG	1 cut(s)	636
MhlI	GDGCHC	1 cut(s)	666
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	90, 261, 636
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	9 cut(s)	47, 55, 113, 185, 277, 315, 529, 565, 613
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	89, 303, 656, 678, 688
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	2 cut(s)	586, 660
MspR9I	CCNGG	2 cut(s)	586, 661
MunI	CAATTG	1 cut(s)	636
MwoI	GCNNNNNNNGC	4 cut(s)	331, 405, 410, 494
NciI	CCSGG	2 cut(s)	586, 661
NlaIII	CATG	1 cut(s)	98
PaqCI	CACCTGC	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	144
PkrI	GCNGC	4 cut(s)	156, 259, 439, 461
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
PshBI	ATTAAT	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	139
PstI	CTGCAG	2 cut(s)	378, 439
PstNI	CAGNNNCTG	1 cut(s)	382
RsaI	GTAC	2 cut(s)	112, 389
RsaNI	GTAC	2 cut(s)	111, 388
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	5 cut(s)	89, 303, 656, 678, 688
SatI	GCNGC	4 cut(s)	155, 258, 438, 460
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	2 cut(s)	586, 661
SduI	GDGCHC	1 cut(s)	666
SfcI	CTRYAG	2 cut(s)	374, 435
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	3 cut(s)	90, 261, 636
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	2 cut(s)	516, 560
StyD4I	CCNGG	2 cut(s)	584, 659
TaaI	ACNGT	1 cut(s)	291
TasI	AATT	3 cut(s)	90, 261, 636
TatI	WGTACW	2 cut(s)	110, 387
TauI	GCSGC	1 cut(s)	157
Tru1I	TTAA	5 cut(s)	89, 303, 656, 678, 688
Tru9I	TTAA	5 cut(s)	89, 303, 656, 678, 688
TscAI	CASTG	3 cut(s)	28, 75, 469
TseI	GCWGC	3 cut(s)	257, 437, 459
TspDTI	ATGAA	2 cut(s)	83, 555
TspRI	CASTG	3 cut(s)	28, 75, 469
Vha464I	CTTAAG	1 cut(s)	677
VspI	ATTAAT	1 cut(s)	89
XspI	CTAG	2 cut(s)	516, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.