Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011404

Physical Location & Seq

Genomic Coordinates Forward (+)

10594534 .. 10595948

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15240.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGATGATGAAGAACTGTTGGAGAAGGTTAAGAAGGACAGGAAGAAGAGGCTTGAAAGGCAAGGAGTTCTCAGCTCATCAAAGAAAGAAACAGGTTTTTCTGCAGGAACTTGTGTACCGGCTAAGCAAAGCAGGCCAGGCCATCGAAAGTAACGATTTGCCTGCAGCCAGTTCGGTTCTTGGAGCCAGCACTGACACAGATTGGGTTCAGAAGGCGAACCTCGCTTTGAATAAGCTAAGCTCTAGCCCTGAAGAGAAGACTGAAGTGGATACGTTCAACTCCTCACTAGCTTCATTGATATCATCAGTTACGCGGAATGATGTAGAGTCCTCCAAGCTTGCATTTGTGTCTTCTGCCAGCGCAATTGAGAAATGGACAACATTAACCGGGCTCATTGACCAGCTTAAGGGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009941 GO:0009987 GO:0010033 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.26

Weight (kDa)

9.81

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02530 AT4G02530 AT4G02530
fragaria_vesca	FvH4_1g03010
malus_domestica	MD02G1029500.v1.1 MD15G1170900.v1.1
prunus_persica	Prupe.7G245400_v2.0.a1
pyrus_communis	pycom02g02440 pycom15g15240
rosa_chinensis	RchiOBHm_Chr2g0088141
rosa_laevigata	RLG00000015925
rosa_multiflora	Rmu_co7966632.1_g000001 Rmu_sc0003275.1_g000049
rosa_roxburghii	Rroxscaffold_2G00152930
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036200 Rh2BG035400 Rh2CG036600 Rh2DG035900
rosa_wichuraiana	Rw2G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	313
AciI	CCGC	1 cut(s)	313
AcuI	CTGAAG	2 cut(s)	270, 282
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	406
AflII	CTTAAG	1 cut(s)	404
AgsI	TTSAA	3 cut(s)	55, 229, 277
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	6 cut(s)	74, 235, 240, 290, 337, 403
AluI	AGCT	6 cut(s)	74, 235, 240, 290, 337, 403
AoxI	GGCC	2 cut(s)	133, 138
ApeKI	GCWGC	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	388
BaeI	ACNNNNGTAYC	2 cut(s)	98, 131
BanII	GRGCYC	1 cut(s)	393
BbsI	GAAGAC	2 cut(s)	263, 342
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	1 cut(s)	149
BcgI	CGANNNNNNTGC	4 cut(s)	143, 153, 177, 187
BciT130I	CCWGG	1 cut(s)	137
BciVI	GTATCC	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	388
BfaI	CTAG	2 cut(s)	243, 287
BfmI	CTRYAG	2 cut(s)	101, 162
BfrI	CTTAAG	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	262
BisI	GCNGC	1 cut(s)	165
BlpI	GCTNAGC	2 cut(s)	122, 236
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	2 cut(s)	137, 388
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	2 cut(s)	137, 388
BpiI	GAAGAC	2 cut(s)	263, 342
Bpu1102I	GCTNAGC	2 cut(s)	122, 236
BpuMI	CCSGG	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	313
BshFI	GGCC	2 cut(s)	135, 140
BsiSI	CCGG	2 cut(s)	118, 387
BslI	CCNNNNNNNGG	1 cut(s)	406
BsnI	GGCC	2 cut(s)	135, 140
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp1720I	GCTNAGC	2 cut(s)	122, 236
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	2 cut(s)	135, 140
BspCNI	CTCAG	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	2 cut(s)	105, 166
BspTI	CTTAAG	1 cut(s)	404
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	168
BssAI	RCCGGY	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	2 cut(s)	40, 246
BstAFI	CTTAAG	1 cut(s)	404
BstC8I	GCNNGC	5 cut(s)	133, 162, 187, 339, 358
BstDEI	CTNAG	3 cut(s)	70, 122, 236
BstFNI	CGCG	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 132, 137, 221
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	135, 386
BstSFI	CTRYAG	2 cut(s)	101, 162
BstUI	CGCG	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	2 cut(s)	263, 342
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	135, 140
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	5 cut(s)	133, 162, 187, 339, 358
CfoI	GCGC	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	115
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	3 cut(s)	70, 122, 236
Eam1104I	CTCTTC	2 cut(s)	40, 246
EarI	CTCTTC	2 cut(s)	40, 246
Eco24I	GRGCYC	1 cut(s)	393
Eco32I	GATATC	1 cut(s)	300
Eco57I	CTGAAG	2 cut(s)	270, 282
EcoRII	CCWGG	1 cut(s)	135
EcoRV	GATATC	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	393
Fnu4HI	GCNGC	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	243, 287
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	135, 140
HapII	CCGG	2 cut(s)	118, 387
HhaI	GCGC	1 cut(s)	362
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	2 cut(s)	118, 387
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	210
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	3 cut(s)	18, 27, 205
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	3 cut(s)	103, 164, 341
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 132, 137, 221
HpyF3I	CTNAG	3 cut(s)	70, 122, 236
HpySE526I	ACGT	1 cut(s)	272
HspAI	GCGC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	1 cut(s)	176
MaeI	CTAG	2 cut(s)	243, 287
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	149, 307
MboII	GAAGA	6 cut(s)	22, 54, 57, 263, 268, 342
MfeI	CAATTG	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	335
MnlI	CCTC	4 cut(s)	41, 230, 292, 340
MseI	TTAA	4 cut(s)	29, 383, 405, 415
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	2 cut(s)	118, 387
MspR9I	CCNGG	2 cut(s)	137, 388
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	313
MwoI	GCNNNNNNNGC	4 cut(s)	57, 132, 137, 221
NciI	CCSGG	1 cut(s)	388
NlaIV	GGNNCC	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	184
PstI	CTGCAG	2 cut(s)	105, 166
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	4 cut(s)	29, 383, 405, 415
SatI	GCNGC	1 cut(s)	165
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	137, 388
SduI	GDGCHC	1 cut(s)	393
SfcI	CTRYAG	2 cut(s)	101, 162
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	2 cut(s)	243, 287
StyD4I	CCNGG	2 cut(s)	135, 386
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	1 cut(s)	144
TasI	AATT	1 cut(s)	363
Tru1I	TTAA	4 cut(s)	29, 383, 405, 415
Tru9I	TTAA	4 cut(s)	29, 383, 405, 415
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	23, 282
TspRI	CASTG	1 cut(s)	196
Vha464I	CTTAAG	1 cut(s)	404
XspI	CTAG	2 cut(s)	243, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.