Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011404

Physical Location & Seq

Genomic Coordinates Forward (+)

2415202 .. 2420337

Gene Structure 5136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG035900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCCACAGCCTCTCTCTCTAGTGCAAACACATTCCTCTCTGTAACAACATTAAGTTCTTCCCAGAAAGGTAACACCAGGAGACACTTGACCTTTTGCAAAGTACACAGTGACTCATCATCATCAGCATCTCCAGCTCTGACCAAGAGAGGCCTCTCCATCAGCTTTGCCACCAGCCTTGTGTTCTCAGTGGTTGGTGGAGGCTGCTTCAGTTCCAATGCAGCAATTCTAGAAGCTGATGATGATGTGGAGCTTATGGAAAGGGTTAAGAAAGATAGGCAGAAGAGGCTTGAAAAACAGTTGGTCATCAGCTCTGCCAAAAAAGAAACAGGAGATCTACAGGAACTGGTGTTCAGGCTGAGCAAAGTAGGCCAGGCCATCGATGGTAACGATTTGTCTACAGCTAGTTCAGTTCTCGGGGATACAGATTGGGTTAAGAAGGCCAATCTAGCTTTGAACAAGCTGAGCTCTAGTCCTGAAGAGCAGACAGAGGTGGATGCATTCAATTCCTCACTAGCTTCATTGATATCATCAGTTACAAAGAATGATGTAGAGTCCTCCAAACTTGCGTTTGTGTCGTCTGCCAGTGCAATCGAGAAATGGACAGCATTAACCGGGCTAGTTGACCAGCTTAAGGGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009941 GO:0009987 GO:0010033 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

22.68

Weight (kDa)

6.74

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPH2	PF20675	112 - 214	2.2e-42	Maintenance of Photosystem II under High light 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02530 AT4G02530 AT4G02530
fragaria_vesca	FvH4_1g03010
malus_domestica	MD02G1029500.v1.1 MD15G1170900.v1.1
prunus_persica	Prupe.7G245400_v2.0.a1
pyrus_communis	pycom02g02440 pycom15g15240
rosa_chinensis	RchiOBHm_Chr2g0088141
rosa_laevigata	RLG00000015925
rosa_multiflora	Rmu_co7966632.1_g000001 Rmu_sc0003275.1_g000049
rosa_roxburghii	Rroxscaffold_2G00152930
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036200 Rh2BG035400 Rh2CG036600 Rh2DG035900
rosa_wichuraiana	Rw2G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	193, 498
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	634
AflII	CTTAAG	1 cut(s)	632
AgsI	TTSAA	3 cut(s)	293, 457, 505
AjnI	CCWGG	2 cut(s)	77, 372
AloI	GAACNNNNNNTCC	2 cut(s)	335, 367
Alw21I	GWGCWC	1 cut(s)	470
Alw26I	GTCTC	1 cut(s)	76
AlwNI	CAGNNNCTG	1 cut(s)	346
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	5 cut(s)	3, 151, 370, 375, 441
ApeKI	GCWGC	2 cut(s)	204, 221
AsuC2I	CCSGG	1 cut(s)	616
AvaI	CYCGRG	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	470
BbvI	GCAGC	2 cut(s)	191, 233
BccI	CCATC	3 cut(s)	167, 377, 386
BciT130I	CCWGG	2 cut(s)	79, 374
BciVI	GTATCC	1 cut(s)	415
BcnI	CCSGG	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	7 cut(s)	21, 230, 405, 449, 471, 515, 620
BfmI	CTRYAG	2 cut(s)	338, 399
BfrI	CTTAAG	1 cut(s)	632
BfuI	GTATCC	1 cut(s)	415
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	2 cut(s)	205, 222
BlpI	GCTNAGC	2 cut(s)	359, 464
BlsI	GCNGC	2 cut(s)	206, 223
Bme1390I	CCNGG	3 cut(s)	79, 374, 616
BmeT110I	CYCGRG	1 cut(s)	416
BmrFI	CCNGG	3 cut(s)	79, 374, 616
BmsI	GCATC	2 cut(s)	137, 487
BpmI	CTGGAG	1 cut(s)	117
Bpu1102I	GCTNAGC	2 cut(s)	359, 464
BpuMI	CCSGG	1 cut(s)	616
Bsa29I	ATCGAT	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse1I	ACTGG	2 cut(s)	351, 585
BseBI	CCWGG	2 cut(s)	79, 374
BseCI	ATCGAT	1 cut(s)	381
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseMII	CTCAG	3 cut(s)	201, 350, 455
BseNI	ACTGG	2 cut(s)	351, 585
BseXI	GCAGC	2 cut(s)	191, 233
BshFI	GGCC	5 cut(s)	5, 153, 372, 377, 443
BshVI	ATCGAT	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	470
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	615
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmAI	GTCTC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	500
BsnI	GGCC	5 cut(s)	5, 153, 372, 377, 443
BsoBI	CYCGRG	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp143I	GATC	1 cut(s)	334
Bsp1720I	GCTNAGC	2 cut(s)	359, 464
BspANI	GGCC	5 cut(s)	5, 153, 372, 377, 443
BspCNI	CTCAG	3 cut(s)	200, 351, 456
BspDI	ATCGAT	1 cut(s)	381
BspQI	GCTCTTC	1 cut(s)	474
BspTI	CTTAAG	1 cut(s)	632
BsrI	ACTGG	2 cut(s)	351, 585
BssMI	GATC	1 cut(s)	334
Bst2UI	CCWGG	2 cut(s)	79, 374
Bst4CI	ACNGT	2 cut(s)	110, 300
Bst6I	CTCTTC	2 cut(s)	278, 474
BstAFI	CTTAAG	1 cut(s)	632
BstDEI	CTNAG	3 cut(s)	187, 359, 464
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 286, 369, 449
BstNI	CCWGG	2 cut(s)	79, 374
BstSCI	CCNGG	3 cut(s)	77, 372, 614
BstSFI	CTRYAG	2 cut(s)	338, 399
BstV1I	GCAGC	2 cut(s)	191, 233
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	415
BsuRI	GGCC	5 cut(s)	5, 153, 372, 377, 443
BsuTUI	ATCGAT	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	502
BtsIMutI	CAGTG	3 cut(s)	115, 195, 592
CaiI	CAGNNNCTG	1 cut(s)	346
ClaI	ATCGAT	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	104
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	3 cut(s)	187, 359, 464
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	278, 474
EarI	CTCTTC	2 cut(s)	278, 474
Ecl136II	GAGCTC	1 cut(s)	468
Eco147I	AGGCCT	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	470
Eco32I	GATATC	1 cut(s)	528
Eco53kI	GAGCTC	1 cut(s)	468
Eco57I	CTGAAG	2 cut(s)	193, 498
Eco88I	CYCGRG	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	468
EcoRII	CCWGG	2 cut(s)	77, 372
EcoRV	GATATC	1 cut(s)	528
EcoT22I	ATGCAT	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	470
FaiI	YATR	1 cut(s)	257
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	2 cut(s)	205, 222
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	2 cut(s)	205, 222
FspBI	CTAG	7 cut(s)	21, 230, 405, 449, 471, 515, 620
GluI	GCNGC	2 cut(s)	205, 222
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	5 cut(s)	5, 153, 372, 377, 443
HapII	CCGG	1 cut(s)	615
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HinfI	GANTC	2 cut(s)	113, 554
HpaII	CCGG	1 cut(s)	615
Hpy166II	GTNNAC	3 cut(s)	106, 399, 625
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	3 cut(s)	230, 476, 595
Hpy8I	GTNNAC	3 cut(s)	106, 399, 625
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	2 cut(s)	110, 300
HpyCH4V	TGCA	5 cut(s)	26, 99, 221, 500, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 286, 369, 449
HpyF3I	CTNAG	3 cut(s)	187, 359, 464
Kzo9I	GATC	1 cut(s)	334
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	1 cut(s)	250
Lsp1109I	GCAGC	2 cut(s)	191, 233
LweI	GCATC	2 cut(s)	137, 487
MaeI	CTAG	7 cut(s)	21, 230, 405, 449, 471, 515, 620
MaeIII	GTNAC	5 cut(s)	43, 71, 110, 386, 535
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	3 cut(s)	51, 295, 491
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	470
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	225, 505
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	107, 563
MnlI	CCTC	9 cut(s)	22, 47, 143, 164, 194, 279, 484, 520, 568
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	502
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	53, 267, 435, 611, 633, 643
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	1 cut(s)	615
MspR9I	CCNGG	3 cut(s)	79, 374, 616
Mva1269I	GAATGC	1 cut(s)	500
MvaI	CCWGG	2 cut(s)	79, 374
MwoI	GCNNNNNNNGC	4 cut(s)	134, 286, 369, 449
NciI	CCSGG	1 cut(s)	616
NdeII	GATC	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PctI	GAATGC	1 cut(s)	500
PkrI	GCNGC	2 cut(s)	206, 223
PleI	GAGTC	2 cut(s)	107, 562
PpsI	GAGTC	2 cut(s)	107, 562
Psp124BI	GAGCTC	1 cut(s)	470
Psp6I	CCWGG	2 cut(s)	77, 372
PspGI	CCWGG	2 cut(s)	77, 372
PstNI	CAGNNNCTG	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	470
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	6 cut(s)	53, 267, 435, 611, 633, 643
SatI	GCNGC	2 cut(s)	205, 222
Sau3AI	GATC	1 cut(s)	334
SchI	GAGTC	2 cut(s)	107, 563
ScrFI	CCNGG	3 cut(s)	79, 374, 616
SduI	GDGCHC	1 cut(s)	470
SfaNI	GCATC	2 cut(s)	137, 487
SfcI	CTRYAG	2 cut(s)	338, 399
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	2 cut(s)	225, 505
SseBI	AGGCCT	1 cut(s)	153
SspMI	CTAG	7 cut(s)	21, 230, 405, 449, 471, 515, 620
SstI	GAGCTC	1 cut(s)	470
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	3 cut(s)	77, 372, 614
TaaI	ACNGT	2 cut(s)	110, 300
TaqI	TCGA	2 cut(s)	381, 594
TasI	AATT	2 cut(s)	225, 505
TatI	WGTACW	1 cut(s)	103
Tru1I	TTAA	6 cut(s)	53, 267, 435, 611, 633, 643
Tru9I	TTAA	6 cut(s)	53, 267, 435, 611, 633, 643
TscAI	CASTG	3 cut(s)	115, 195, 592
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	2 cut(s)	204, 221
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	510
TspRI	CASTG	3 cut(s)	115, 195, 592
Vha464I	CTTAAG	1 cut(s)	632
XbaI	TCTAGA	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	398
XspI	CTAG	7 cut(s)	21, 230, 405, 449, 471, 515, 620
Zsp2I	ATGCAT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.