AT4G02720

Ras-induced vulval development antagonist

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008597
Physical Location & Seq
Reverse (-)
1204089 .. 1205892
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02720.1

Sequence Viewer

Length: 1269 bp
ATGACGATGAACTCGCTTCCGAGGAGATTTGGGAAGAATCATGGCTATTTGGATCGAGATTATCGAAACGGAAGACGATCTGGTTCAGATTCCGATGAAGAATTGAAGGGATTGAGTCACGAAGAGTATAGGAGGCAGAAACGGCTTAAGATGAGGAAATCAGCCAAGTTCTGCTTTTGGGAGAACACACCGAGTCCACCTAGAGATCAGAACGAGGATTCCGATGAGAACGCCGACGAGATTCAGGACAAGAACGGCGGCGAAAGAGATGATAATTCGAAAGGGAAAGAAAGGAAAGGTAAATCTGACTCGGAATCTGAATCTGATGGTTTGAGATCTAGGAAGAGGAAGAGTAAGAGCTCGAGGTCTAAGCGCAGGAGAAAGAGATCTTATGACAGCGATAGTGAATCCGAAGGGAGTGAGAGTGATTCGGAAGAGGAAGATAGGAGACGAAGGAGGAAGAGTTCTTCTAAGAGGAAGAAGAGTAGAAGCAGCCGTAGTTTTAGGAAAAAGCGAAGTCATAGGAGAAAGACGAAATACAGTGACTCTGATGAGAGCAGCGATGAAGATAGTAAAGCTGAGATTAGTGCTTCTTCGTCTGGGGAGGAAGAAGATACCAAGTCAAAGAGCAAGAGGCGGAAGAAATCTTCGGATTCTAGTTCAAAACGAAGCAAGGGAGAGAAGACGAAGTCAGGGAGTGACAGCGATGGTACTGAGGAAGATTCGAAGATGCAAGTAGACGAAACGGTGAAGAACACTGAGCTAGAACTTGATGAAGAAGAGTTGAAGAAGTTCAAAGAGATGATTGAATTAAAGAAGAAATCTTCAGCTGTTGATGAAGAGGAAGAAGAAGGTGATGTTGGTCCAATGCCATTACCTAAAGCTGAAGGTCACATCAGTTATGGTGGTGCTTTAAGACCCGGTGAAGGAGACGCCATTGCACAGTATGTTCAGCAAGGTAAACGTATCCCACGTAGAGGAGAAGTGGGTCTTAACGCTGAAGAGATTCAGAAGTTTGAGGATCTTGGTTATGTGATGAGTGGAAGTAGGCATCAAAGGATGAATGCTATTCGTATTAGAAAAGAAAACCAGGTTTACAGTGCTGAAGACAAACGGGCATTGGCCATGTTTAACTACGAGGAGAAGGCGAAGCGCGAGGCTAAGGTTATGTCTGATCTGCAGCGGCTTGTGCAGCGCCATATGGGAGAAGAGGTGGGGCCAAATCATGACCCTTTCGGTGCTGGAAAGACTGAAGAAGATGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SynMuv_product

Protein Analysis

422

Amino Acids

48.46

Weight (kDa)

8.91

Isoelectric Point (pI)

83.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nkap_C PF06047 300 - 398 2.1e-47 NF-kappa-B-activating protein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 738
AccII CGCG 1 cut(s) 1155
AciI CCGC 3 cut(s) 258, 637, 1183
AclWI GGATC 2 cut(s) 60, 1029
AcoI YGGCCR 1 cut(s) 1122
AcuI CTGAAG 4 cut(s) 810, 906, 1020, 1125
AcyI GRCGYC 1 cut(s) 933
AfaI GTAC 1 cut(s) 712
AfiI CCNNNNNNNGG 2 cut(s) 926, 977
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 5 cut(s) 106, 663, 787, 796, 809
AjnI CCWGG 1 cut(s) 1089
AjuI GAANNNNNNNTTGG 2 cut(s) 843, 875
AloI GAACNNNNNNTCC 4 cut(s) 203, 235, 448, 480
AluBI AGCT 5 cut(s) 360, 578, 763, 830, 884
AluI AGCT 5 cut(s) 360, 578, 763, 830, 884
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 2 cut(s) 442, 924
AlwI GGATC 2 cut(s) 60, 1029
Ama87I CYCGRG 1 cut(s) 361
AoxI GGCC 2 cut(s) 1122, 1217
ApeKI GCWGC 4 cut(s) 492, 558, 1180, 1192
Asp700I GAANNNNTTC 2 cut(s) 791, 1005
AspLEI GCGC 3 cut(s) 375, 1155, 1197
AspS9I GGNCC 2 cut(s) 863, 1217
AsuC2I CCSGG 1 cut(s) 921
AsuHPI GGTGA 3 cut(s) 760, 866, 935
AsuII TTCGAA 2 cut(s) 278, 725
AvaI CYCGRG 1 cut(s) 361
AvaII GGWCC 1 cut(s) 863
BalI TGGCCA 1 cut(s) 1124
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 3 cut(s) 79, 689, 1113
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 4 cut(s) 504, 570, 1192, 1204
BccI CCATC 2 cut(s) 320, 701
BceAI ACGGC 3 cut(s) 158, 271, 480
BciT130I CCWGG 1 cut(s) 1091
BciVI GTATCC 1 cut(s) 977
BcnI CCSGG 1 cut(s) 921
BcoDI GTCTC 2 cut(s) 442, 924
BfaI CTAG 4 cut(s) 201, 339, 657, 764
BfmI CTRYAG 1 cut(s) 1178
BfoI RGCGCY 1 cut(s) 1198
BfrI CTTAAG 1 cut(s) 146
BfuI GTATCC 1 cut(s) 977
BglII AGATCT 2 cut(s) 335, 386
BisI GCNGC 6 cut(s) 259, 493, 559, 1181, 1184, 1193
BlsI GCNGC 6 cut(s) 260, 494, 560, 1182, 1185, 1194
Bme1390I CCNGG 2 cut(s) 921, 1091
Bme18I GGWCC 1 cut(s) 863
BmeT110I CYCGRG 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 863, 1217
BmiI GGNNCC 1 cut(s) 1218
BmrFI CCNGG 2 cut(s) 921, 1091
BmsI GCATC 2 cut(s) 720, 1060
BpiI GAAGAC 3 cut(s) 79, 689, 1113
Bpu10I CCTNAGC 1 cut(s) 1161
Bpu14I TTCGAA 2 cut(s) 278, 725
BpuMI CCSGG 1 cut(s) 921
BsaAI YACGTR 1 cut(s) 974
BsaHI GRCGYC 1 cut(s) 933
BsaJI CCNNGG 1 cut(s) 20
BsaXI ACNNNNNCTCC 6 cut(s) 409, 439, 448, 478, 1197, 1227
Bsc4I CCNNNNNNNGG 2 cut(s) 926, 977
Bse3DI GCAATG 1 cut(s) 936
BseBI CCWGG 1 cut(s) 1091
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 1065
BseLI CCNNNNNNNGG 2 cut(s) 926, 977
BseMI GCAATG 1 cut(s) 936
BseMII CTCAG 3 cut(s) 570, 705, 750
BseRI GAGGAG 3 cut(s) 37, 993, 1154
BseXI GCAGC 4 cut(s) 504, 570, 1192, 1204
BsgI GTGCAG 1 cut(s) 1211
Bsh1236I CGCG 1 cut(s) 1155
BshFI GGCC 2 cut(s) 1124, 1219
BsiHKAI GWGCWC 1 cut(s) 362
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 1 cut(s) 921
BslI CCNNNNNNNGG 2 cut(s) 926, 977
BsmAI GTCTC 2 cut(s) 442, 924
BsmBI CGTCTC 2 cut(s) 442, 924
BsmI GAATGC 1 cut(s) 1069
BsnI GGCC 2 cut(s) 1124, 1219
BsoBI CYCGRG 1 cut(s) 361
Bsp119I TTCGAA 2 cut(s) 278, 725
Bsp1286I GDGCHC 1 cut(s) 362
Bsp143I GATC 7 cut(s) 52, 77, 205, 335, 386, 1021, 1174
BspACI CCGC 3 cut(s) 258, 637, 1183
BspANI GGCC 2 cut(s) 1124, 1219
BspCNI CTCAG 3 cut(s) 571, 706, 751
BspFNI CGCG 1 cut(s) 1155
BspHI TCATGA 1 cut(s) 1225
BspLI GGNNCC 1 cut(s) 1218
BspMAI CTGCAG 1 cut(s) 1182
BspPI GGATC 2 cut(s) 60, 1029
BspT104I TTCGAA 2 cut(s) 278, 725
BspTI CTTAAG 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 936
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 7 cut(s) 52, 77, 205, 335, 386, 1021, 1174
BssNI GRCGYC 1 cut(s) 933
Bst2UI CCWGG 1 cut(s) 1091
Bst4CI ACNGT 4 cut(s) 542, 748, 945, 1100
BstACI GRCGYC 1 cut(s) 933
BstAFI CTTAAG 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 974
BstBI TTCGAA 2 cut(s) 278, 725
BstDEI CTNAG 6 cut(s) 369, 471, 579, 714, 759, 1161
BstF5I GGATG 1 cut(s) 1065
BstFNI CGCG 1 cut(s) 1155
BstH2I RGCGCY 1 cut(s) 1198
BstHHI GCGC 3 cut(s) 375, 1155, 1197
BstKTI GATC 7 cut(s) 55, 80, 208, 338, 389, 1024, 1177
BstMAI GTCTC 2 cut(s) 442, 924
BstMBI GATC 7 cut(s) 52, 77, 205, 335, 386, 1021, 1174
BstMWI GCNNNNNNNGC 3 cut(s) 142, 1189, 1192
BstNI CCWGG 1 cut(s) 1091
BstSCI CCNGG 2 cut(s) 919, 1089
BstSFI CTRYAG 1 cut(s) 1178
BstUI CGCG 1 cut(s) 1155
BstV1I GCAGC 4 cut(s) 504, 570, 1192, 1204
BstV2I GAAGAC 3 cut(s) 79, 689, 1113
BstX2I RGATCY 3 cut(s) 335, 386, 1021
BstYI RGATCY 3 cut(s) 335, 386, 1021
BsuI GTATCC 1 cut(s) 977
BsuRI GGCC 2 cut(s) 1124, 1219
BtgZI GCGATG 2 cut(s) 576, 720
BtsCI GGATG 1 cut(s) 1065
BtsIMutI CAGTG 3 cut(s) 547, 756, 1105
CciI TCATGA 1 cut(s) 1225
CfoI GCGC 3 cut(s) 375, 1155, 1197
Cfr13I GGNCC 2 cut(s) 863, 1217
CseI GACGC 1 cut(s) 941
CsiI ACCWGGT 1 cut(s) 1089
Csp6I GTAC 1 cut(s) 711
CviAII CATG 3 cut(s) 41, 1126, 1226
CviQI GTAC 1 cut(s) 711
DdeI CTNAG 6 cut(s) 369, 471, 579, 714, 759, 1161
DpnI GATC 7 cut(s) 54, 79, 207, 337, 388, 1023, 1176
DpnII GATC 7 cut(s) 52, 77, 205, 335, 386, 1021, 1174
EaeI YGGCCR 1 cut(s) 1122
EciI GGCGGA 1 cut(s) 652
Ecl136II GAGCTC 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 863
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 4 cut(s) 810, 906, 1020, 1125
Eco88I CYCGRG 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 1089
EcoT38I GRGCYC 1 cut(s) 362
Esp3I CGTCTC 2 cut(s) 442, 924
FaeI CATG 3 cut(s) 44, 1129, 1229
FalI AAGNNNNNCTT 4 cut(s) 158, 190, 975, 1007
FatI CATG 3 cut(s) 40, 1125, 1225
FauNDI CATATG 1 cut(s) 1200
FblI GTMKAC 1 cut(s) 738
Fnu4HI GCNGC 6 cut(s) 259, 493, 559, 1181, 1184, 1193
FokI GGATG 1 cut(s) 1072
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 6 cut(s) 259, 493, 559, 1181, 1184, 1193
FspBI CTAG 4 cut(s) 201, 339, 657, 764
GlaI GCGC 3 cut(s) 374, 1154, 1196
GluI GCNGC 6 cut(s) 259, 493, 559, 1181, 1184, 1193
HaeII RGCGCY 1 cut(s) 1198
HaeIII GGCC 2 cut(s) 1124, 1219
HapII CCGG 1 cut(s) 921
HgaI GACGC 1 cut(s) 941
HhaI GCGC 3 cut(s) 375, 1155, 1197
Hin1I GRCGYC 1 cut(s) 933
Hin1II CATG 3 cut(s) 44, 1129, 1229
Hin6I GCGC 3 cut(s) 373, 1153, 1195
HinP1I GCGC 3 cut(s) 373, 1153, 1195
HpaII CCGG 1 cut(s) 921
HphI GGTGA 3 cut(s) 760, 866, 935
Hpy166II GTNNAC 4 cut(s) 197, 739, 962, 1096
Hpy188III TCNNGA 4 cut(s) 56, 119, 245, 1226
Hpy8I GTNNAC 4 cut(s) 197, 739, 962, 1096
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 7 cut(s) 100, 407, 447, 845, 881, 920, 1138
HpyCH4III ACNGT 4 cut(s) 542, 748, 945, 1100
HpyCH4IV ACGT 2 cut(s) 964, 973
HpyCH4V TGCA 4 cut(s) 733, 941, 1180, 1192
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 1189, 1192
HpyF3I CTNAG 6 cut(s) 369, 471, 579, 714, 759, 1161
HpySE526I ACGT 2 cut(s) 964, 973
Hsp92I GRCGYC 1 cut(s) 933
Hsp92II CATG 3 cut(s) 44, 1129, 1229
HspAI GCGC 3 cut(s) 373, 1153, 1195
Kzo9I GATC 7 cut(s) 52, 77, 205, 335, 386, 1021, 1174
LpnPI CCDG 9 cut(s) 66, 230, 361, 585, 678, 934, 1076, 1103, 1227
Lsp1109I GCAGC 4 cut(s) 504, 570, 1192, 1204
LweI GCATC 2 cut(s) 720, 1060
MabI ACCWGGT 1 cut(s) 1089
MaeI CTAG 4 cut(s) 201, 339, 657, 764
MaeII ACGT 2 cut(s) 964, 973
MaeIII GTNAC 4 cut(s) 116, 542, 698, 890
MalI GATC 7 cut(s) 54, 79, 207, 337, 388, 1023, 1176
MboI GATC 7 cut(s) 52, 77, 205, 335, 386, 1021, 1174
MflI RGATCY 3 cut(s) 335, 386, 1021
MhlI GDGCHC 1 cut(s) 362
MlsI TGGCCA 1 cut(s) 1124
MluCI AATT 3 cut(s) 101, 274, 809
MluNI TGGCCA 1 cut(s) 1124
MlyI GAGTC 4 cut(s) 124, 202, 302, 539
Mox20I TGGCCA 1 cut(s) 1124
MroXI GAANNNNTTC 2 cut(s) 791, 1005
MscI TGGCCA 1 cut(s) 1124
MseI TTAA 5 cut(s) 147, 812, 914, 993, 1131
Msp20I TGGCCA 1 cut(s) 1124
MspA1I CMGCKG 2 cut(s) 830, 1183
MspCI CTTAAG 1 cut(s) 146
MspI CCGG 1 cut(s) 921
MspR9I CCNGG 2 cut(s) 921, 1091
Mva1269I GAATGC 1 cut(s) 1069
MvaI CCWGG 1 cut(s) 1091
MvnI CGCG 1 cut(s) 1155
MwoI GCNNNNNNNGC 3 cut(s) 142, 1189, 1192
NciI CCSGG 1 cut(s) 921
NdeI CATATG 1 cut(s) 1200
NdeII GATC 7 cut(s) 52, 77, 205, 335, 386, 1021, 1174
NlaIII CATG 3 cut(s) 44, 1129, 1229
NlaIV GGNNCC 1 cut(s) 1218
NmuCI GTSAC 4 cut(s) 116, 542, 698, 890
NspV TTCGAA 2 cut(s) 278, 725
PaeR7I CTCGAG 1 cut(s) 361
PagI TCATGA 1 cut(s) 1225
PcsI WCGNNNNNNNCGW 3 cut(s) 61, 219, 970
PctI GAATGC 1 cut(s) 1069
PdmI GAANNNNTTC 2 cut(s) 791, 1005
PflFI GACNNNGTC 1 cut(s) 688
PkrI GCNGC 6 cut(s) 260, 494, 560, 1182, 1185, 1194
PleI GAGTC 4 cut(s) 123, 201, 302, 539
PpsI GAGTC 4 cut(s) 123, 201, 302, 539
Ppu21I YACGTR 1 cut(s) 974
Psp124BI GAGCTC 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 1089
PspGI CCWGG 1 cut(s) 1089
PspN4I GGNNCC 1 cut(s) 1218
PspPI GGNCC 2 cut(s) 863, 1217
PspXI VCTCGAGB 1 cut(s) 361
PstI CTGCAG 1 cut(s) 1182
PsuI RGATCY 3 cut(s) 335, 386, 1021
PsyI GACNNNGTC 1 cut(s) 688
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 1 cut(s) 712
RsaNI GTAC 1 cut(s) 711
SacI GAGCTC 1 cut(s) 362
SaqAI TTAA 5 cut(s) 147, 812, 914, 993, 1131
SatI GCNGC 6 cut(s) 259, 493, 559, 1181, 1184, 1193
Sau3AI GATC 7 cut(s) 52, 77, 205, 335, 386, 1021, 1174
Sau96I GGNCC 2 cut(s) 863, 1217
SchI GAGTC 4 cut(s) 124, 202, 302, 539
ScrFI CCNGG 2 cut(s) 921, 1091
SduI GDGCHC 1 cut(s) 362
SexAI ACCWGGT 1 cut(s) 1089
SfaNI GCATC 2 cut(s) 720, 1060
SfcI CTRYAG 1 cut(s) 1178
Sfr274I CTCGAG 1 cut(s) 361
SfuI TTCGAA 2 cut(s) 278, 725
SinI GGWCC 1 cut(s) 863
SlaI CTCGAG 1 cut(s) 361
SmlI CTYRAG 2 cut(s) 146, 361
SmoI CTYRAG 2 cut(s) 146, 361
Sse9I AATT 3 cut(s) 101, 274, 809
SsiI CCGC 3 cut(s) 258, 637, 1183
SspMI CTAG 4 cut(s) 201, 339, 657, 764
SstI GAGCTC 1 cut(s) 362
StyD4I CCNGG 2 cut(s) 919, 1089
TaaI ACNGT 4 cut(s) 542, 748, 945, 1100
TaiI ACGT 2 cut(s) 967, 976
TaqI TCGA 5 cut(s) 55, 64, 278, 362, 725
TasI AATT 3 cut(s) 101, 274, 809
TauI GCSGC 2 cut(s) 261, 1186
Tru1I TTAA 5 cut(s) 147, 812, 914, 993, 1131
Tru9I TTAA 5 cut(s) 147, 812, 914, 993, 1131
TscAI CASTG 3 cut(s) 547, 763, 1105
TseFI GTSAC 4 cut(s) 116, 542, 698, 890
TseI GCWGC 4 cut(s) 492, 558, 1180, 1192
Tsp45I GTSAC 4 cut(s) 116, 542, 698, 890
TspDTI ATGAA 6 cut(s) 23, 111, 579, 789, 852, 1076
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 3 cut(s) 547, 763, 1105
Tth111I GACNNNGTC 1 cut(s) 688
Vha464I CTTAAG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 863
XhoI CTCGAG 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 738
XmnI GAANNNNTTC 2 cut(s) 791, 1005
XspI CTAG 4 cut(s) 201, 339, 657, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.