Rh4CG169200

Ras-induced vulval development antagonist

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0008597
Physical Location & Seq
Reverse (-)
37061379 .. 37061882
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG169200.1

Sequence Viewer

Length: 504 bp
ATGGATGAGAATAGTATTGAGGCCTTGAAATTGAAGGAAATCCTTGAGGCTCAGAGGAACCCTTCTTTGGATTTGGATAATGAACCTGTGGTTGGGCCAATGCCCTTGCCTAGAGCCGAAGGGCATATTAGTTATGGTGGAGCGCTTAGGCCTGGTGAAGGTGATGCCATTGCACAGTATGTTCAACAAGGGAAGCGTATTCCACGAAGAGGAGAAGTTGGTCTTTCTGCAGAGGAGATTCAGAAGTTTGAGGGTCTTGGCTATGTGATGAGTGGTAGTAGGCACCAGAGGATGAATGCCATTCGTATTAGAAAGGAAAACCAGGTTTATAGTGCTGAGGATAAGAGGGCATTGGCCATGTTTAACTATGAGGAGAAAGCAAAGCGTGAGCACAAGGTTATGGCTGATTTGCAGCGGCTGGTTCAGCGCCATATTGGACAGGATGTTGGTCCTACTCACGATCCCTTTTCTTCCAAGGCCTCCGAGGATCCTGATGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SynMuv_product

Protein Analysis

167

Amino Acids

18.76

Weight (kDa)

5.6

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nkap_C PF06047 44 - 142 8.9e-48 NF-kappa-B-activating protein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 282
AciI CCGC 1 cut(s) 415
AclWI GGATC 3 cut(s) 455, 482, 495
AcoI YGGCCR 1 cut(s) 354
AfeI AGCGCT 1 cut(s) 144
AfiI CCNNNNNNNGG 4 cut(s) 67, 92, 158, 209
AgsI TTSAA 3 cut(s) 28, 34, 185
AjnI CCWGG 2 cut(s) 151, 321
AjuI GAANNNNNNNTTGG 4 cut(s) 50, 75, 82, 107
Alw21I GWGCWC 1 cut(s) 393
AlwI GGATC 3 cut(s) 455, 482, 495
AlwNI CAGNNNCTG 1 cut(s) 418
Aor51HI AGCGCT 1 cut(s) 144
AoxI GGCC 5 cut(s) 21, 95, 149, 354, 477
ApeKI GCWGC 1 cut(s) 412
AspLEI GCGC 2 cut(s) 145, 429
AspS9I GGNCC 2 cut(s) 95, 449
AsuHPI GGTGA 2 cut(s) 167, 173
AvaII GGWCC 1 cut(s) 449
BalI TGGCCA 1 cut(s) 356
BamHI GGATCC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 393
BbvCI CCTCAGC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 424
BciT130I CCWGG 2 cut(s) 153, 323
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 228
BfoI RGCGCY 2 cut(s) 146, 430
BisI GCNGC 2 cut(s) 413, 416
BlsI GCNGC 2 cut(s) 414, 417
Bme1390I CCNGG 2 cut(s) 153, 323
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 95, 449
BmiI GGNNCC 3 cut(s) 59, 284, 489
BmrFI CCNGG 2 cut(s) 153, 323
BmsI GCATC 1 cut(s) 154
Bpu10I CCTNAGC 2 cut(s) 146, 336
BpuEI CTTGAG 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 474, 483
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 92, 158, 209
Bse3DI GCAATG 1 cut(s) 168
BseBI CCWGG 2 cut(s) 153, 323
BseDI CCNNGG 2 cut(s) 474, 483
BseGI GGATG 3 cut(s) 10, 297, 448
BseLI CCNNNNNNNGG 4 cut(s) 67, 92, 158, 209
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 65, 327
BseRI GAGGAG 3 cut(s) 225, 248, 386
BseXI GCAGC 1 cut(s) 424
BshFI GGCC 5 cut(s) 23, 97, 151, 356, 479
BshNI GGYRCC 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 393
BslI CCNNNNNNNGG 4 cut(s) 67, 92, 158, 209
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 5 cut(s) 23, 97, 151, 356, 479
Bsp1286I GDGCHC 1 cut(s) 393
Bsp143I GATC 2 cut(s) 460, 487
BspACI CCGC 1 cut(s) 415
BspANI GGCC 5 cut(s) 23, 97, 151, 356, 479
BspCNI CTCAG 2 cut(s) 64, 328
BspLI GGNNCC 3 cut(s) 59, 284, 489
BspMAI CTGCAG 1 cut(s) 232
BspPI GGATC 3 cut(s) 455, 482, 495
BspT107I GGYRCC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 168
BssECI CCNNGG 2 cut(s) 474, 483
BssMI GATC 2 cut(s) 460, 487
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 153, 323
Bst4CI ACNGT 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 202
BstDEI CTNAG 3 cut(s) 51, 146, 336
BstENI CCTNNNNNAGG 1 cut(s) 156
BstF5I GGATG 3 cut(s) 10, 297, 448
BstH2I RGCGCY 2 cut(s) 146, 430
BstHHI GCGC 2 cut(s) 145, 429
BstKTI GATC 2 cut(s) 463, 490
BstMBI GATC 2 cut(s) 460, 487
BstMWI GCNNNNNNNGC 1 cut(s) 424
BstNI CCWGG 2 cut(s) 153, 323
BstSCI CCNGG 2 cut(s) 151, 321
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 424
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BsuRI GGCC 5 cut(s) 23, 97, 151, 356, 479
BtsCI GGATG 3 cut(s) 10, 297, 448
CaiI CAGNNNCTG 1 cut(s) 418
CfoI GCGC 2 cut(s) 145, 429
Cfr13I GGNCC 2 cut(s) 95, 449
CsiI ACCWGGT 1 cut(s) 321
CviAII CATG 1 cut(s) 358
DdeI CTNAG 3 cut(s) 51, 146, 336
DpnI GATC 2 cut(s) 462, 489
DpnII GATC 2 cut(s) 460, 487
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 474
Eco147I AGGCCT 3 cut(s) 23, 151, 479
Eco47I GGWCC 1 cut(s) 449
Eco47III AGCGCT 1 cut(s) 144
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 151, 321
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 1 cut(s) 361
FaiI YATR 9 cut(s) 126, 135, 180, 264, 330, 359, 369, 401, 432
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 1 cut(s) 357
Fnu4HI GCNGC 2 cut(s) 413, 416
FokI GGATG 3 cut(s) 17, 304, 455
Fsp4HI GCNGC 2 cut(s) 413, 416
FspBI CTAG 1 cut(s) 111
GlaI GCGC 2 cut(s) 144, 428
GluI GCNGC 2 cut(s) 413, 416
HaeII RGCGCY 2 cut(s) 146, 430
HaeIII GGCC 5 cut(s) 23, 97, 151, 356, 479
HhaI GCGC 2 cut(s) 145, 429
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 2 cut(s) 143, 427
HinP1I GCGC 2 cut(s) 143, 427
HinfI GANTC 1 cut(s) 238
HphI GGTGA 2 cut(s) 167, 173
Hpy188I TCNGA 3 cut(s) 54, 243, 484
Hpy188III TCNNGA 2 cut(s) 458, 491
HpyAV CCTTC 4 cut(s) 28, 72, 113, 152
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4V TGCA 3 cut(s) 173, 230, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 424
HpyF3I CTNAG 3 cut(s) 51, 146, 336
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 2 cut(s) 143, 427
Kzo9I GATC 2 cut(s) 460, 487
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 8 cut(s) 99, 138, 165, 299, 308, 335, 404, 425
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 1 cut(s) 154
MabI ACCWGGT 1 cut(s) 321
MaeI CTAG 1 cut(s) 111
MalI GATC 2 cut(s) 462, 489
MboI GATC 2 cut(s) 460, 487
MboII GAAGA 2 cut(s) 219, 462
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 393
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 356
Mox20I TGGCCA 1 cut(s) 356
MscI TGGCCA 1 cut(s) 356
MseI TTAA 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 415
MspR9I CCNGG 2 cut(s) 153, 323
Mva1269I GAATGC 1 cut(s) 301
MvaI CCWGG 2 cut(s) 153, 323
MwoI GCNNNNNNNGC 1 cut(s) 424
NdeII GATC 2 cut(s) 460, 487
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 3 cut(s) 59, 284, 489
PceI AGGCCT 3 cut(s) 23, 151, 479
PctI GAATGC 1 cut(s) 301
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 2 cut(s) 414, 417
Psp6I CCWGG 2 cut(s) 151, 321
PspGI CCWGG 2 cut(s) 151, 321
PspN4I GGNNCC 3 cut(s) 59, 284, 489
PspPI GGNCC 2 cut(s) 95, 449
PstI CTGCAG 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 418
PsuI RGATCY 1 cut(s) 487
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 2 cut(s) 413, 416
Sau3AI GATC 2 cut(s) 460, 487
Sau96I GGNCC 2 cut(s) 95, 449
ScrFI CCNGG 2 cut(s) 153, 323
SduI GDGCHC 1 cut(s) 393
SetI ASST 4 cut(s) 88, 163, 327, 399
SexAI ACCWGGT 1 cut(s) 321
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 29
SseBI AGGCCT 3 cut(s) 23, 151, 479
SsiI CCGC 1 cut(s) 415
SspMI CTAG 1 cut(s) 111
StuI AGGCCT 3 cut(s) 23, 151, 479
StyD4I CCNGG 2 cut(s) 151, 321
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 177
TasI AATT 1 cut(s) 29
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TseI GCWGC 1 cut(s) 412
TspDTI ATGAA 2 cut(s) 96, 308
VpaK11BI GGWCC 1 cut(s) 449
XagI CCTNNNNNAGG 1 cut(s) 156
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.