Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8144940.1

Orthogroup ID

OG0008597

Physical Location & Seq

Genomic Coordinates Forward (+)

4 .. 644

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8144940.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 641 bp

atggcgaggccttcttccaccgttcatgcccccaatcgacgattccgttctgatcacgataacagccgttactccccgccggactatgacaactcacctgacgaccgccgccaccgtcgcagccccagctatgaaaggtacgaccgccaacgaaatcgctcttactctcctgattaccctagccctaggtccaacggaggccgaagattcggtcgggccgggaacgaccggtcttactcgcctcgacgaagccctaggtccaacggagggccggagtctttacccaggagattcgggcgcgccgggaacgatagggaccggaatggaaggtggccggagtcggaggagtccgacgaggagctgaaggggctgaatattgaggagtaccgaaggctgaagaggcagaagctgaggaaggcgttgaggagttgtatctggaatgtgacgccgagcccgccgaggaatgagaacgatgaattcgaattggaggacaaggctgacgagattccagaggttcttggtgaagagaacaacgattcaggcgagaaattgaaggaaaaagccaagagtgaatcggagtctgaatcggaatcggaggattcgcggtcgagaaagaggaagaagagttcgggttctaagcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SynMuv_product

Protein Analysis

214

Amino Acids

25.03

Weight (kDa)

9.7

Isoelectric Point (pI)

111.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02720
fragaria_vesca	FvH4_2g11951 FvH4_2g11951 FvH4_2g11951 FvH4_4g12190
malus_domestica	MD03G1262900.v1.1 MD11G1283600.v1.1
prunus_persica	Prupe.8G239200_v2.0.a1
pyrus_communis	pycom03g21040 pycom11g25110
rosa_chinensis	RchiOBHm_Chr4g0409951
rosa_laevigata	RLG00000008511
rosa_multiflora	Rmu_co8122418.1_g000001 Rmu_co8144940.1_g000001 Rmu_sc0000987.1_g000003
rosa_roxburghii	Rroxscaffold_5G00354430
rosa_rugosa	Rorug04G0099600
rosa_samantha	Rh4AG158600 Rh4BG158000 Rh4CG169200 Rh4DG153300
rosa_wichuraiana	Rw0G003210 Rw4G013090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	300, 604
AciI	CCGC	6 cut(s)	77, 106, 109, 145, 455, 604
AcoI	YGGCCR	1 cut(s)	332
AcsI	RAATTY	1 cut(s)	476
AcuI	CTGAAG	2 cut(s)	383, 416
AcyI	GRCGYC	1 cut(s)	446
AfaI	GTAC	2 cut(s)	140, 386
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgeI	ACCGGT	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	553
AjnI	CCWGG	1 cut(s)	284
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AloI	GAACNNNNNNTCC	1 cut(s)	610
AluBI	AGCT	3 cut(s)	129, 361, 409
AluI	AGCT	3 cut(s)	129, 361, 409
AlwNI	CAGNNNCTG	1 cut(s)	409
AoxI	GGCC	5 cut(s)	8, 199, 216, 269, 332
ApeKI	GCWGC	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	476
ArsI	GACNNNNNNTTYG	2 cut(s)	196, 228
AscI	GGCGCGCC	1 cut(s)	298
AsiGI	ACCGGT	1 cut(s)	228
AspA2I	CCTAGG	2 cut(s)	185, 254
AspLEI	GCGC	2 cut(s)	300, 302
AspS9I	GGNCC	5 cut(s)	189, 216, 258, 269, 316
AsuC2I	CCSGG	2 cut(s)	220, 304
AsuHPI	GGTGA	2 cut(s)	87, 533
AsuII	TTCGAA	1 cut(s)	480
AvaII	GGWCC	3 cut(s)	189, 258, 316
AvrII	CCTAGG	2 cut(s)	185, 254
BanII	GRGCYC	1 cut(s)	455
BbvCI	CCTCAGC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	132
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	286
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	2 cut(s)	220, 304
BfaI	CTAG	3 cut(s)	180, 186, 255
BisI	GCNGC	2 cut(s)	109, 121
BlnI	CCTAGG	2 cut(s)	185, 254
BlsI	GCNGC	2 cut(s)	110, 122
Bme1390I	CCNGG	3 cut(s)	220, 286, 304
Bme18I	GGWCC	3 cut(s)	189, 258, 316
BmgT120I	GGNCC	5 cut(s)	189, 216, 258, 269, 316
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	3 cut(s)	220, 286, 304
Bpu10I	CCTNAGC	1 cut(s)	410
Bpu14I	TTCGAA	1 cut(s)	480
BpuMI	CCSGG	2 cut(s)	220, 304
BsaHI	GRCGYC	1 cut(s)	446
BsaJI	CCNNGG	4 cut(s)	185, 254, 284, 458
BsaWI	WCCGGW	2 cut(s)	228, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse118I	RCCGGY	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	4 cut(s)	185, 254, 284, 458
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	401
BsePI	GCGCGC	1 cut(s)	298
BseRI	GAGGAG	4 cut(s)	359, 371, 395, 439
BseXI	GCAGC	1 cut(s)	132
BseYI	CCCAGC	1 cut(s)	125
Bsh1236I	CGCG	2 cut(s)	300, 604
Bsh1285I	CGRYCG	5 cut(s)	106, 145, 214, 229, 608
BshFI	GGCC	5 cut(s)	10, 201, 218, 271, 334
BshTI	ACCGGT	1 cut(s)	228
BsiEI	CGRYCG	5 cut(s)	106, 145, 214, 229, 608
BsiSI	CCGG	7 cut(s)	80, 219, 229, 272, 303, 319, 335
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	5 cut(s)	10, 201, 218, 271, 334
Bsp119I	TTCGAA	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	6 cut(s)	77, 106, 109, 145, 455, 604
BspANI	GGCC	5 cut(s)	10, 201, 218, 271, 334
BspCNI	CTCAG	1 cut(s)	402
BspFNI	CGCG	2 cut(s)	300, 604
BspLI	GGNNCC	1 cut(s)	317
BspT104I	TTCGAA	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	4 cut(s)	185, 254, 284, 458
BssHII	GCGCGC	1 cut(s)	298
BssMI	GATC	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	446
BssT1I	CCWWGG	2 cut(s)	185, 254
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	2 cut(s)	22, 116
Bst6I	CTCTTC	3 cut(s)	392, 519, 617
BstACI	GRCGYC	1 cut(s)	446
BstBI	TTCGAA	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	300, 455
BstDEI	CTNAG	2 cut(s)	410, 636
BstFNI	CGCG	2 cut(s)	300, 604
BstHHI	GCGC	2 cut(s)	300, 302
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstMCI	CGRYCG	5 cut(s)	106, 145, 214, 229, 608
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 126, 367, 400, 454
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	3 cut(s)	218, 284, 302
BstUI	CGCG	2 cut(s)	300, 604
BstV1I	GCAGC	1 cut(s)	132
BsuRI	GGCC	5 cut(s)	10, 201, 218, 271, 334
Cac8I	GCNNGC	2 cut(s)	300, 455
CaiI	CAGNNNCTG	1 cut(s)	409
CfoI	GCGC	2 cut(s)	300, 302
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	5 cut(s)	189, 216, 258, 269, 316
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	2 cut(s)	139, 385
CspAI	ACCGGT	1 cut(s)	228
CviAII	CATG	1 cut(s)	26
CviQI	GTAC	2 cut(s)	139, 385
DdeI	CTNAG	2 cut(s)	410, 636
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	332
Eam1104I	CTCTTC	3 cut(s)	392, 519, 617
EarI	CTCTTC	3 cut(s)	392, 519, 617
Eco130I	CCWWGG	2 cut(s)	185, 254
Eco147I	AGGCCT	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	455
Eco47I	GGWCC	3 cut(s)	189, 258, 316
Eco57I	CTGAAG	2 cut(s)	383, 416
EcoRI	GAATTC	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	2 cut(s)	185, 254
EcoT38I	GRGCYC	1 cut(s)	455
ErhI	CCWWGG	2 cut(s)	185, 254
FaeI	CATG	1 cut(s)	29
FaiI	YATR	3 cut(s)	27, 87, 132
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	1 cut(s)	25
FauI	CCCGC	2 cut(s)	84, 462
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	109, 121
FriOI	GRGCYC	1 cut(s)	455
Fsp4HI	GCNGC	2 cut(s)	109, 121
FspBI	CTAG	3 cut(s)	180, 186, 255
GlaI	GCGC	2 cut(s)	299, 301
GluI	GCNGC	2 cut(s)	109, 121
GsaI	CCCAGC	1 cut(s)	129
HaeIII	GGCC	5 cut(s)	10, 201, 218, 271, 334
HapII	CCGG	7 cut(s)	80, 219, 229, 272, 303, 319, 335
HgaI	GACGC	1 cut(s)	454
HhaI	GCGC	2 cut(s)	300, 302
Hin1I	GRCGYC	1 cut(s)	446
Hin1II	CATG	1 cut(s)	29
Hin6I	GCGC	2 cut(s)	298, 300
HinP1I	GCGC	2 cut(s)	298, 300
HpaII	CCGG	7 cut(s)	80, 219, 229, 272, 303, 319, 335
HphI	GGTGA	2 cut(s)	87, 533
Hpy188I	TCNGA	7 cut(s)	52, 343, 352, 577, 583, 589, 595
Hpy188III	TCNNGA	5 cut(s)	56, 170, 436, 509, 609
Hpy99I	CGWCG	4 cut(s)	42, 120, 249, 356
HpyAV	CCTTC	6 cut(s)	21, 321, 358, 384, 409, 547
HpyCH4III	ACNGT	2 cut(s)	22, 116
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 126, 367, 400, 454
HpyF3I	CTNAG	2 cut(s)	410, 636
Hsp92I	GRCGYC	1 cut(s)	446
Hsp92II	CATG	1 cut(s)	29
HspAI	GCGC	2 cut(s)	298, 300
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	1 cut(s)	132
MaeI	CTAG	3 cut(s)	180, 186, 255
MaeIII	GTNAC	2 cut(s)	68, 442
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	6 cut(s)	6, 216, 409, 536, 631, 634
MhlI	GDGCHC	1 cut(s)	455
MluCI	AATT	3 cut(s)	476, 482, 548
MlyI	GAGTC	4 cut(s)	284, 347, 356, 587
MmeI	TCCRAC	4 cut(s)	216, 285, 321, 375
MspI	CCGG	7 cut(s)	80, 219, 229, 272, 303, 319, 335
MspR9I	CCNGG	3 cut(s)	220, 286, 304
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	2 cut(s)	300, 604
MwoI	GCNNNNNNNGC	5 cut(s)	117, 126, 367, 400, 454
NciI	CCSGG	2 cut(s)	220, 304
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	1 cut(s)	317
NmeAIII	GCCGAG	2 cut(s)	474, 483
NmuCI	GTSAC	1 cut(s)	442
NspV	TTCGAA	1 cut(s)	480
PalAI	GGCGCGCC	1 cut(s)	298
PauI	GCGCGC	1 cut(s)	298
PceI	AGGCCT	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	3 cut(s)	43, 477, 540
PfeI	GAWTC	9 cut(s)	42, 207, 291, 505, 536, 572, 584, 590, 599
PinAI	ACCGGT	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	110, 122
PleI	GAGTC	4 cut(s)	283, 346, 355, 586
PpsI	GAGTC	4 cut(s)	283, 346, 355, 586
Psp6I	CCWGG	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	5 cut(s)	189, 216, 258, 269, 316
PstNI	CAGNNNCTG	1 cut(s)	409
PteI	GCGCGC	1 cut(s)	298
RsaI	GTAC	2 cut(s)	140, 386
RsaNI	GTAC	2 cut(s)	139, 385
SatI	GCNGC	2 cut(s)	109, 121
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	5 cut(s)	189, 216, 258, 269, 316
SchI	GAGTC	4 cut(s)	284, 347, 356, 587
ScrFI	CCNGG	3 cut(s)	220, 286, 304
SduI	GDGCHC	1 cut(s)	455
SetI	ASST	9 cut(s)	100, 131, 140, 191, 260, 332, 363, 411, 516
SfuI	TTCGAA	1 cut(s)	480
SgsI	GGCGCGCC	1 cut(s)	298
SinI	GGWCC	3 cut(s)	189, 258, 316
Sse9I	AATT	3 cut(s)	476, 482, 548
SseBI	AGGCCT	1 cut(s)	10
SsiI	CCGC	6 cut(s)	77, 106, 109, 145, 455, 604
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	3 cut(s)	180, 186, 255
StuI	AGGCCT	1 cut(s)	10
StyD4I	CCNGG	3 cut(s)	218, 284, 302
StyI	CCWWGG	2 cut(s)	185, 254
TaaI	ACNGT	2 cut(s)	22, 116
TaqI	TCGA	4 cut(s)	37, 244, 480, 608
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	3 cut(s)	476, 482, 548
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	9 cut(s)	42, 207, 291, 505, 536, 572, 584, 590, 599
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	1 cut(s)	120
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	14, 147, 489
TspGWI	ACGGA	3 cut(s)	35, 210, 279
VpaK11BI	GGWCC	3 cut(s)	189, 258, 316
XapI	RAATTY	1 cut(s)	476
XmaJI	CCTAGG	2 cut(s)	185, 254
XspI	CTAG	3 cut(s)	180, 186, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.