Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8122418.1

Orthogroup ID

OG0008597

Physical Location & Seq

Genomic Coordinates Reverse (-)

262 .. 621

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8122418.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

cttaggcctggtgaaggtgatgccattgcacagtatgttcaacaagggaagcgtattccacgaagaggagaagttggtctttctgcagaggagattcagaagtttgagggtcttggctatgtgatgagtggtagtaggcaccagaggatgaatgccattcgtattagaaaggaaaaccaggtttatagtgctgaggataagagggcattggccatgtttaactatgaggagaaagcaaagcgtgagcacaaggttatggctgatttgcagcggctggttcagcgccatattggacaggatgttggtcctactcatgatcccttttcttccaaggcctccgaggatcctgatgatgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SynMuv_product

Protein Analysis

119

Amino Acids

13.57

Weight (kDa)

7.11

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02720
fragaria_vesca	FvH4_2g11951 FvH4_2g11951 FvH4_2g11951 FvH4_4g12190
malus_domestica	MD03G1262900.v1.1 MD11G1283600.v1.1
prunus_persica	Prupe.8G239200_v2.0.a1
pyrus_communis	pycom03g21040 pycom11g25110
rosa_chinensis	RchiOBHm_Chr4g0409951
rosa_laevigata	RLG00000008511
rosa_multiflora	Rmu_co8122418.1_g000001 Rmu_co8144940.1_g000001 Rmu_sc0000987.1_g000003
rosa_roxburghii	Rroxscaffold_5G00354430
rosa_rugosa	Rorug04G0099600
rosa_samantha	Rh4AG158600 Rh4BG158000 Rh4CG169200 Rh4DG153300
rosa_wichuraiana	Rw0G003210 Rw4G013090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	138
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	3 cut(s)	311, 338, 351
AcoI	YGGCCR	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	14, 65
AgsI	TTSAA	1 cut(s)	41
AjnI	CCWGG	2 cut(s)	7, 177
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	3 cut(s)	311, 338, 351
AlwNI	CAGNNNCTG	1 cut(s)	274
AoxI	GGCC	3 cut(s)	5, 210, 333
ApeKI	GCWGC	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	23, 29
AvaII	GGWCC	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	343
BanI	GGYRCC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	280
BciT130I	CCWGG	2 cut(s)	9, 179
BfmI	CTRYAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	2 cut(s)	269, 272
BlsI	GCNGC	2 cut(s)	270, 273
Bme1390I	CCNGG	2 cut(s)	9, 179
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	2 cut(s)	140, 345
BmrFI	CCNGG	2 cut(s)	9, 179
BmsI	GCATC	1 cut(s)	10
Bpu10I	CCTNAGC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	330, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 65
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	9, 179
BseDI	CCNNGG	2 cut(s)	330, 339
BseGI	GGATG	2 cut(s)	153, 304
BseLI	CCNNNNNNNGG	2 cut(s)	14, 65
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	183
BseRI	GAGGAG	3 cut(s)	81, 104, 242
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	3 cut(s)	7, 212, 335
BshNI	GGYRCC	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	14, 65
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	7, 212, 335
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	316, 343
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	3 cut(s)	7, 212, 335
BspCNI	CTCAG	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	140, 345
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	3 cut(s)	311, 338, 351
BspT107I	GGYRCC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	330, 339
BssMI	GATC	2 cut(s)	316, 343
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	2 cut(s)	9, 179
Bst4CI	ACNGT	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	58
BstDEI	CTNAG	2 cut(s)	2, 192
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	153, 304
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	2 cut(s)	319, 346
BstMBI	GATC	2 cut(s)	316, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNI	CCWGG	2 cut(s)	9, 179
BstSCI	CCNGG	2 cut(s)	7, 177
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	7, 212, 335
BtsCI	GGATG	2 cut(s)	153, 304
CaiI	CAGNNNCTG	1 cut(s)	274
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	305
CsiI	ACCWGGT	1 cut(s)	177
CviAII	CATG	2 cut(s)	214, 314
CviJI	RGCY	6 cut(s)	7, 117, 212, 260, 274, 335
CviKI_1	RGCY	6 cut(s)	7, 117, 212, 260, 274, 335
DdeI	CTNAG	2 cut(s)	2, 192
DpnI	GATC	2 cut(s)	318, 345
DpnII	GATC	2 cut(s)	316, 343
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	330
Eco147I	AGGCCT	2 cut(s)	7, 335
Eco47I	GGWCC	1 cut(s)	305
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoRII	CCWGG	2 cut(s)	7, 177
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	2 cut(s)	217, 317
FaiI	YATR	8 cut(s)	36, 120, 186, 215, 225, 257, 288, 315
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	2 cut(s)	213, 313
Fnu4HI	GCNGC	2 cut(s)	269, 272
FokI	GGATG	2 cut(s)	160, 311
Fsp4HI	GCNGC	2 cut(s)	269, 272
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	2 cut(s)	269, 272
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	3 cut(s)	7, 212, 335
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	217, 317
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	1 cut(s)	94
HphI	GGTGA	2 cut(s)	23, 29
Hpy188I	TCNGA	2 cut(s)	99, 340
Hpy188III	TCNNGA	2 cut(s)	314, 347
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	29, 86, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	2 cut(s)	2, 192
Hsp92II	CATG	2 cut(s)	217, 317
HspAI	GCGC	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	316, 343
LpnPI	CCDG	6 cut(s)	21, 155, 164, 191, 260, 281
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	10
MabI	ACCWGGT	1 cut(s)	177
MalI	GATC	2 cut(s)	318, 345
MboI	GATC	2 cut(s)	316, 343
MboII	GAAGA	2 cut(s)	75, 318
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	1 cut(s)	212
MluNI	TGGCCA	1 cut(s)	212
MnlI	CCTC	9 cut(s)	59, 82, 100, 138, 187, 195, 220, 334, 346
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	271
MspR9I	CCNGG	2 cut(s)	9, 179
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	2 cut(s)	9, 179
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeII	GATC	2 cut(s)	316, 343
NlaIII	CATG	2 cut(s)	217, 317
NlaIV	GGNNCC	2 cut(s)	140, 345
PagI	TCATGA	1 cut(s)	313
PceI	AGGCCT	2 cut(s)	7, 335
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	270, 273
Psp6I	CCWGG	2 cut(s)	7, 177
PspGI	CCWGG	2 cut(s)	7, 177
PspN4I	GGNNCC	2 cut(s)	140, 345
PspPI	GGNCC	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	2 cut(s)	269, 272
Sau3AI	GATC	2 cut(s)	316, 343
Sau96I	GGNCC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	9, 179
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	3 cut(s)	19, 183, 255
SexAI	ACCWGGT	1 cut(s)	177
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	305
SseBI	AGGCCT	2 cut(s)	7, 335
SsiI	CCGC	1 cut(s)	271
StuI	AGGCCT	2 cut(s)	7, 335
StyD4I	CCNGG	2 cut(s)	7, 177
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	33
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseI	GCWGC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	305
XagI	CCTNNNNNAGG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.