pycom03g21040

Ras-induced vulval development antagonist

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
21381487 .. 21385617
4131 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g21040.2

Sequence Viewer

Length: 1623 bp
ATGAGGAAATCAGGGAAGTTTTGTATTTGGGAATTGACTCCCAGCCCGCCTAGGGTTGAGAACGATGAGTTCGAATTGGTGGGCAAGGCTGATGAGATTTCGGAACGGTATGGCGAGGAAGAGGAGATGGAATCGAAGGATAAGAAGAAAGAGAAGGAAAAATCTGAGTCCGAATCTGAATCGGATTCGGAGGATTTGAGGTCGAGGAGGAGGAAGAAGAGTTCGGGTTCGAAGCGTAGGAGTAGGAAATCGAAGTATAGTCATAGTGAATCGGAGAGTGAGAGTGAAAGCGATGATGAATCGGATGAAGAGGAGGATCGGAGACAGAGAAAGAAGTCGAAAAGTAGGAGTAAGAGAAGCAGGAGCAGAAGAGAAAGGAGAAGAAAGAGGAAAAGCAGGCGTAGTAGCAGTAGCGAGTCCGATGAGAGCGAAGACAGTGAAAGTGAGGGTTCAGATTTAAAGAAGAAGAAGAAACAGCGAAAGTCTCGCAGTCGGAGTAAGAAGAAAGAGTTGGAAACTGAAATGGAGAGTGAGAAATCGGATTCGGAGGAGAAGGGTTTGGATTCTGAGGTTGATGCCAAGGCTGCTGCTTTAGTGGAAGAGGAGGTGATGAAGGACGAGAGTAATGCGGAGGCATTGAAGTTTAAGGAGATTTTCGAGGCTCAGAAGATGCTGTCGCTGGACGATGAACCAGTGGTTGGTCCAATGCCGTTGCCTAGAGCTGAAGGGCATATTAGTTATGGTGGGGCTCTTAGGCCTGGTGAAGGTGATGCCATTGCACAATATGTTCAGCAGGGGAAGCGTATTCCGCGGAGAGGAGAAGTGGGTCTTTCGGCTGACGAGATTCAGAAGTTTGAGAACCTGGGGTACGTAATGAGTGGTAGTAGGCACCAGAGAATGAATGCCATTCGTATTAGGAAGGAAAACCAGGTTTACAGTGCTGAGGATAAGCGGGCTTTGGCCATGTTCAACTACGAGGAGAAAGCGAAGCGCGAGCACAAGGTTATGGCGGATTTGCAGCGACTGGTTCAGCGCCATATCGGGCAGGATGTCGGGCCTACTCACGACCCATTTTCAGGGAAGGAAAAAGAGATTGAATTTGCTGATACTTACAGTATTGAATTGGACGCTTTGTTTTATCAAATTAAGTTGAATCTTAAGATTCCAAACAAATTGAACTGGGGGGATTTCACTATTGGATTCCAAGTATCGTGTGAAGAACCAGCCATTGCACAATATGTTCAGCAGGGGAAACGTATTCCGTGGAGAGGAGAAGTGGGTCTTTCGGCTGACGAGATTCAGAAGTTTGAGAATCTTGAGTACGTAATGAGTGGTAGTAGGCACCAGAGAATGAATGCCATTCGTTCAACTACGAGGAGAAAGCGAAGCGCGAGCACAAGGTTTTGGCAGATTTGCAGCGACTGGTTCAGCGCCATATTGGGCAGGATGTTGGGCCTACTCACGACCCTTTTTCGGGGAAGGAAAAAGAGATTGAATTTGCTGATACTTACTTGTACTTCGCTAATAGTGTTAAGTACATTGTCTTTGAGTGGTGGTTTTTGCCGATGCTTTCTGAAGGACAAAACACACACTCACGGTTCCTGTATAGCATTAAAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

541

Amino Acids

62.19

Weight (kDa)

9.13

Isoelectric Point (pI)

69.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 888, 1341
AccB7I CCANNNNNTGG 1 cut(s) 698
AccII CGCG 3 cut(s) 811, 993, 1391
AciI CCGC 6 cut(s) 47, 629, 809, 811, 952, 1010
AclWI GGATC 1 cut(s) 324
AcoI YGGCCR 1 cut(s) 960
AcsI RAATTY 2 cut(s) 1097, 1495
AcuI CTGAAG 2 cut(s) 744, 1595
AfaI GTAC 4 cut(s) 869, 1322, 1516, 1537
AfiI CCNNNNNNNGG 8 cut(s) 52, 698, 764, 815, 1076, 1268, 1473, 1474
AflII CTTAAG 1 cut(s) 1157
AgsI TTSAA 8 cut(s) 640, 970, 1097, 1121, 1153, 1177, 1368, 1495
AjnI CCWGG 3 cut(s) 757, 861, 927
AjuI GAANNNNNNNTTGG 4 cut(s) 494, 526, 681, 713
AloI GAACNNNNNNTCC 2 cut(s) 205, 237
AluBI AGCT 1 cut(s) 722
AluI AGCT 1 cut(s) 722
Alw21I GWGCWC 2 cut(s) 999, 1397
Alw26I GTCTC 2 cut(s) 316, 489
AlwI GGATC 1 cut(s) 324
AlwNI CAGNNNCTG 2 cut(s) 1024, 1422
AoxI GGCC 4 cut(s) 755, 960, 1055, 1453
ApeKI GCWGC 4 cut(s) 584, 587, 1018, 1416
ApoI RAATTY 2 cut(s) 1097, 1495
AspA2I CCTAGG 1 cut(s) 50
AspLEI GCGC 4 cut(s) 993, 1035, 1391, 1433
AspS9I GGNCC 3 cut(s) 701, 1055, 1453
AsuHPI GGTGA 3 cut(s) 619, 773, 779
AsuII TTCGAA 2 cut(s) 72, 230
AvaII GGWCC 1 cut(s) 701
AvrII CCTAGG 1 cut(s) 50
BalI TGGCCA 1 cut(s) 962
BanI GGYRCC 2 cut(s) 888, 1341
BanII GRGCYC 1 cut(s) 751
BbsI GAAGAC 1 cut(s) 438
Bbv12I GWGCWC 2 cut(s) 999, 1397
BbvCI CCTCAGC 1 cut(s) 942
BbvI GCAGC 4 cut(s) 571, 574, 1030, 1428
BccI CCATC 1 cut(s) 121
BceAI ACGGC 1 cut(s) 694
BcgI CGANNNNNNTGC 2 cut(s) 608, 642
BciT130I CCWGG 3 cut(s) 759, 863, 929
BcoDI GTCTC 2 cut(s) 316, 489
BfaI CTAG 2 cut(s) 51, 717
BfoI RGCGCY 2 cut(s) 1036, 1434
BfrI CTTAAG 1 cut(s) 1157
BisI GCNGC 4 cut(s) 585, 588, 1019, 1417
BlnI CCTAGG 1 cut(s) 50
BlsI GCNGC 4 cut(s) 586, 589, 1020, 1418
Bme1390I CCNGG 3 cut(s) 759, 863, 929
Bme18I GGWCC 1 cut(s) 701
BmgT120I GGNCC 3 cut(s) 701, 1055, 1453
BmiI GGNNCC 3 cut(s) 890, 1343, 1600
BmrFI CCNGG 3 cut(s) 759, 863, 929
BmrI ACTGGG 1 cut(s) 1189
BmsI GCATC 4 cut(s) 565, 660, 760, 1556
BmuI ACTGGG 1 cut(s) 1189
BpiI GAAGAC 1 cut(s) 438
Bpu10I CCTNAGC 1 cut(s) 942
Bpu14I TTCGAA 2 cut(s) 72, 230
BpuEI CTTGAG 1 cut(s) 1337
BsaAI YACGTR 2 cut(s) 871, 1324
BsaJI CCNNGG 5 cut(s) 50, 579, 809, 862, 1262
Bsc4I CCNNNNNNNGG 8 cut(s) 52, 698, 764, 815, 1076, 1268, 1473, 1474
Bse1I ACTGG 4 cut(s) 692, 1029, 1184, 1427
Bse3DI GCAATG 2 cut(s) 774, 1227
BseBI CCWGG 3 cut(s) 759, 863, 929
BseDI CCNNGG 5 cut(s) 50, 579, 809, 862, 1262
BseGI GGATG 3 cut(s) 310, 1054, 1452
BseLI CCNNNNNNNGG 8 cut(s) 52, 698, 764, 815, 1076, 1268, 1473, 1474
BseMI GCAATG 2 cut(s) 774, 1227
BseMII CTCAG 4 cut(s) 156, 558, 677, 933
BseNI ACTGG 4 cut(s) 692, 1029, 1184, 1427
BseXI GCAGC 4 cut(s) 571, 574, 1030, 1428
BseYI CCCAGC 1 cut(s) 41
Bsh1236I CGCG 3 cut(s) 811, 993, 1391
BshFI GGCC 4 cut(s) 757, 962, 1057, 1455
BshNI GGYRCC 2 cut(s) 888, 1341
BsiHKAI GWGCWC 2 cut(s) 999, 1397
BslI CCNNNNNNNGG 8 cut(s) 52, 698, 764, 815, 1076, 1268, 1473, 1474
BsmAI GTCTC 2 cut(s) 316, 489
BsmI GAATGC 2 cut(s) 907, 1360
BsnI GGCC 4 cut(s) 757, 962, 1057, 1455
Bsp119I TTCGAA 2 cut(s) 72, 230
Bsp1286I GDGCHC 3 cut(s) 751, 999, 1397
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 6 cut(s) 47, 629, 809, 811, 952, 1010
BspANI GGCC 4 cut(s) 757, 962, 1057, 1455
BspCNI CTCAG 4 cut(s) 157, 559, 676, 934
BspFNI CGCG 3 cut(s) 811, 993, 1391
BspLI GGNNCC 3 cut(s) 890, 1343, 1600
BspPI GGATC 1 cut(s) 324
BspT104I TTCGAA 2 cut(s) 72, 230
BspT107I GGYRCC 2 cut(s) 888, 1341
BspTI CTTAAG 1 cut(s) 1157
BsrDI GCAATG 2 cut(s) 774, 1227
BsrI ACTGG 4 cut(s) 692, 1029, 1184, 1427
BssECI CCNNGG 5 cut(s) 50, 579, 809, 862, 1262
BssMI GATC 1 cut(s) 316
BssT1I CCWWGG 2 cut(s) 50, 579
Bst2UI CCWGG 3 cut(s) 759, 863, 929
Bst4CI ACNGT 5 cut(s) 108, 437, 938, 1115, 1598
Bst6I CTCTTC 5 cut(s) 114, 212, 303, 364, 594
BstAFI CTTAAG 1 cut(s) 1157
BstBAI YACGTR 2 cut(s) 871, 1324
BstBI TTCGAA 2 cut(s) 72, 230
BstC8I GCNNGC 5 cut(s) 47, 398, 954, 995, 1393
BstDEI CTNAG 5 cut(s) 165, 567, 663, 752, 942
BstDSI CCRYGG 2 cut(s) 809, 1262
BstENI CCTNNNNNAGG 1 cut(s) 762
BstF5I GGATG 3 cut(s) 310, 1054, 1452
BstFNI CGCG 3 cut(s) 811, 993, 1391
BstH2I RGCGCY 2 cut(s) 1036, 1434
BstHHI GCGC 4 cut(s) 993, 1035, 1391, 1433
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 2 cut(s) 316, 489
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 3 cut(s) 584, 799, 808
BstNI CCWGG 3 cut(s) 759, 863, 929
BstSCI CCNGG 3 cut(s) 757, 861, 927
BstSNI TACGTA 2 cut(s) 871, 1324
BstUI CGCG 3 cut(s) 811, 993, 1391
BstV1I GCAGC 4 cut(s) 571, 574, 1030, 1428
BstV2I GAAGAC 1 cut(s) 438
BsuRI GGCC 4 cut(s) 757, 962, 1057, 1455
BtgI CCRYGG 2 cut(s) 809, 1262
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 310, 1054, 1452
BtsIMutI CAGTG 3 cut(s) 442, 699, 943
Cac8I GCNNGC 5 cut(s) 47, 398, 954, 995, 1393
CaiI CAGNNNCTG 2 cut(s) 1024, 1422
CfoI GCGC 4 cut(s) 993, 1035, 1391, 1433
Cfr13I GGNCC 3 cut(s) 701, 1055, 1453
Cfr42I CCGCGG 1 cut(s) 812
CseI GACGC 1 cut(s) 1136
CsiI ACCWGGT 1 cut(s) 927
Csp6I GTAC 4 cut(s) 868, 1321, 1515, 1536
CviAII CATG 1 cut(s) 964
CviQI GTAC 4 cut(s) 868, 1321, 1515, 1536
DdeI CTNAG 5 cut(s) 165, 567, 663, 752, 942
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DraI TTTAAA 1 cut(s) 459
EaeI YGGCCR 1 cut(s) 960
Eam1104I CTCTTC 5 cut(s) 114, 212, 303, 364, 594
EarI CTCTTC 5 cut(s) 114, 212, 303, 364, 594
EciI GGCGGA 1 cut(s) 1025
Eco105I TACGTA 2 cut(s) 871, 1324
Eco130I CCWWGG 2 cut(s) 50, 579
Eco147I AGGCCT 1 cut(s) 757
Eco24I GRGCYC 1 cut(s) 751
Eco47I GGWCC 1 cut(s) 701
Eco57I CTGAAG 2 cut(s) 744, 1595
EcoNI CCTNNNNNAGG 1 cut(s) 762
EcoRII CCWGG 3 cut(s) 757, 861, 927
EcoT14I CCWWGG 2 cut(s) 50, 579
EcoT38I GRGCYC 1 cut(s) 751
ErhI CCWWGG 2 cut(s) 50, 579
FaeI CATG 1 cut(s) 967
FalI AAGNNNNNCTT 4 cut(s) 813, 845, 1266, 1298
FatI CATG 1 cut(s) 963
FauI CCCGC 2 cut(s) 54, 945
Fnu4HI GCNGC 4 cut(s) 585, 588, 1019, 1417
FokI GGATG 3 cut(s) 317, 1061, 1459
FriOI GRGCYC 1 cut(s) 751
Fsp4HI GCNGC 4 cut(s) 585, 588, 1019, 1417
FspBI CTAG 2 cut(s) 51, 717
GlaI GCGC 4 cut(s) 992, 1034, 1390, 1432
GluI GCNGC 4 cut(s) 585, 588, 1019, 1417
GsaI CCCAGC 1 cut(s) 45
HaeII RGCGCY 2 cut(s) 1036, 1434
HaeIII GGCC 4 cut(s) 757, 962, 1057, 1455
HgaI GACGC 1 cut(s) 1136
HhaI GCGC 4 cut(s) 993, 1035, 1391, 1433
Hin1II CATG 1 cut(s) 967
Hin6I GCGC 4 cut(s) 991, 1033, 1389, 1431
HinP1I GCGC 4 cut(s) 991, 1033, 1389, 1431
HphI GGTGA 3 cut(s) 619, 773, 779
Hpy166II GTNNAC 1 cut(s) 934
Hpy188III TCNNGA 3 cut(s) 1064, 1316, 1462
Hpy8I GTNNAC 1 cut(s) 934
HpyCH4III ACNGT 5 cut(s) 108, 437, 938, 1115, 1598
HpyCH4IV ACGT 3 cut(s) 870, 1255, 1323
HpyCH4V TGCA 4 cut(s) 779, 1018, 1232, 1416
HpyF10VI GCNNNNNNNGC 3 cut(s) 584, 799, 808
HpyF3I CTNAG 5 cut(s) 165, 567, 663, 752, 942
HpySE526I ACGT 3 cut(s) 870, 1255, 1323
Hsp92II CATG 1 cut(s) 967
HspAI GCGC 4 cut(s) 991, 1033, 1389, 1431
KspI CCGCGG 1 cut(s) 812
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 1 cut(s) 363
Lsp1109I GCAGC 4 cut(s) 571, 574, 1030, 1428
LweI GCATC 4 cut(s) 565, 660, 760, 1556
MabI ACCWGGT 1 cut(s) 927
MaeI CTAG 2 cut(s) 51, 717
MaeII ACGT 3 cut(s) 870, 1255, 1323
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MhlI GDGCHC 3 cut(s) 751, 999, 1397
MlsI TGGCCA 1 cut(s) 962
MluCI AATT 7 cut(s) 32, 74, 1097, 1121, 1143, 1172, 1495
MluNI TGGCCA 1 cut(s) 962
MlyI GAGTC 3 cut(s) 31, 176, 425
MmeI TCCRAC 2 cut(s) 473, 492
Mox20I TGGCCA 1 cut(s) 962
MscI TGGCCA 1 cut(s) 962
MseI TTAA 7 cut(s) 458, 645, 1146, 1158, 1532, 1613, 1621
Msp20I TGGCCA 1 cut(s) 962
MspA1I CMGCKG 1 cut(s) 811
MspCI CTTAAG 1 cut(s) 1157
MspR9I CCNGG 3 cut(s) 759, 863, 929
Mva1269I GAATGC 2 cut(s) 907, 1360
MvaI CCWGG 3 cut(s) 759, 863, 929
MvnI CGCG 3 cut(s) 811, 993, 1391
MwoI GCNNNNNNNGC 3 cut(s) 584, 799, 808
NdeII GATC 1 cut(s) 316
NlaIII CATG 1 cut(s) 967
NlaIV GGNNCC 3 cut(s) 890, 1343, 1600
NspV TTCGAA 2 cut(s) 72, 230
PceI AGGCCT 1 cut(s) 757
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 2 cut(s) 907, 1360
PflMI CCANNNNNTGG 1 cut(s) 698
PkrI GCNGC 4 cut(s) 586, 589, 1020, 1418
PleI GAGTC 3 cut(s) 31, 175, 424
PpsI GAGTC 3 cut(s) 31, 175, 424
Ppu21I YACGTR 2 cut(s) 871, 1324
Psp6I CCWGG 3 cut(s) 757, 861, 927
PspFI CCCAGC 1 cut(s) 41
PspGI CCWGG 3 cut(s) 757, 861, 927
PspN4I GGNNCC 3 cut(s) 890, 1343, 1600
PspPI GGNCC 3 cut(s) 701, 1055, 1453
PsrI GAACNNNNNNTAC 2 cut(s) 851, 883
PstNI CAGNNNCTG 2 cut(s) 1024, 1422
RsaI GTAC 4 cut(s) 869, 1322, 1516, 1537
RsaNI GTAC 4 cut(s) 868, 1321, 1515, 1536
SacII CCGCGG 1 cut(s) 812
SaqAI TTAA 7 cut(s) 458, 645, 1146, 1158, 1532, 1613, 1621
SatI GCNGC 4 cut(s) 585, 588, 1019, 1417
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 3 cut(s) 701, 1055, 1453
SchI GAGTC 3 cut(s) 31, 176, 425
ScrFI CCNGG 3 cut(s) 759, 863, 929
SduI GDGCHC 3 cut(s) 751, 999, 1397
SexAI ACCWGGT 1 cut(s) 927
SfaNI GCATC 4 cut(s) 565, 660, 760, 1556
Sfr303I CCGCGG 1 cut(s) 812
SfuI TTCGAA 2 cut(s) 72, 230
SgrBI CCGCGG 1 cut(s) 812
SinI GGWCC 1 cut(s) 701
SmlI CTYRAG 2 cut(s) 1157, 1316
SmoI CTYRAG 2 cut(s) 1157, 1316
SnaBI TACGTA 2 cut(s) 871, 1324
Sse9I AATT 7 cut(s) 32, 74, 1097, 1121, 1143, 1172, 1495
SseBI AGGCCT 1 cut(s) 757
SsiI CCGC 6 cut(s) 47, 629, 809, 811, 952, 1010
SspMI CTAG 2 cut(s) 51, 717
StuI AGGCCT 1 cut(s) 757
StyD4I CCNGG 3 cut(s) 757, 861, 927
StyI CCWWGG 2 cut(s) 50, 579
TaaI ACNGT 5 cut(s) 108, 437, 938, 1115, 1598
TaiI ACGT 3 cut(s) 873, 1258, 1326
TaqI TCGA 7 cut(s) 72, 134, 203, 230, 251, 338, 657
TasI AATT 7 cut(s) 32, 74, 1097, 1121, 1143, 1172, 1495
TatI WGTACW 2 cut(s) 1514, 1535
Tru1I TTAA 7 cut(s) 458, 645, 1146, 1158, 1532, 1613, 1621
Tru9I TTAA 7 cut(s) 458, 645, 1146, 1158, 1532, 1613, 1621
TscAI CASTG 3 cut(s) 442, 699, 943
TseI GCWGC 4 cut(s) 584, 587, 1018, 1416
TspDTI ATGAA 6 cut(s) 312, 321, 626, 702, 914, 1367
TspGWI ACGGA 1 cut(s) 1251
TspRI CASTG 3 cut(s) 442, 699, 943
Van91I CCANNNNNTGG 1 cut(s) 698
Vha464I CTTAAG 1 cut(s) 1157
VpaK11BI GGWCC 1 cut(s) 701
XagI CCTNNNNNAGG 1 cut(s) 762
XapI RAATTY 2 cut(s) 1097, 1495
XmaJI CCTAGG 1 cut(s) 50
XspI CTAG 2 cut(s) 51, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.