AT4G02730

WD domain, G-beta repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
1207683 .. 1209287
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02730.1

Sequence Viewer

Length: 1002 bp
ATGCCAAGCGGTGGTAACGGAACAAGTAACGGAGTCGCTAACGCGAATTCCACCGGTAACGCAGGAACAAGCGGAAACGTTCCGATATATAAGCCATACCGTCACCTGAAAACCCTAGAAGGTCACACGGCGGCGATCTCTTGCGTCAAATTCTCCAACGACGGCAATCTTCTCGCTTCCGCTTCCGTAGACAAAACCATGATCCTCTGGTCAGCAACAAACTACTCTCTCATTCATCGTTACGAAGGTCACTCTAGTGGTATCTCCGATCTAGCTTGGTCTTCTGATTCGCATTACACTTGCTCTGCTTCTGATGATTGTACGCTTCGAATCTGGGACGCTAGATCTCCTTATGAATGTCTTAAGGTTCTTAGAGGTCATACGAATTTCGTCTTCTGTGTTAATTTCAATCCTCCTTCGAATTTGATTGTGTCTGGATCGTTCGATGAGACGATTCGTATTTGGGAGGTTAAGACTGGGAAGTGTGTTAGGATGATTAAAGCTCATTCGATGCCGATTTCGAGTGTGCATTTTAATAGAGATGGATCGTTGATTGTTTCGGCAAGTCATGATGGTTCTTGTAAGATTTGGGATGCTAAAGAAGGAACTTGCTTGAAGACTCTTATTGATGATAAATCTCCGGCTGTTTCTTTCGCTAAGTTCTCGCCCAATGGCAAGTTTATACTCGTTGCTACTCTCGATAGTACTCTCAAGCTGTCGAACTATGCGACGGGGAAGTTTTTGAAAGTGTATACAGGACATACTAACAAAGTGTTCTGTATCACATCGGCGTTTTCTGTAACGAATGGGAAGTACATTGTGAGTGGATCAGAGGATAATTGTGTGTATCTGTGGGATCTTCAAGCGAGAAATATACTGCAGAGACTAGAAGGCCACACAGACGCAGTGATCTCAGTGAGTTGCCATCCGGTTCAGAACGAGATATCTTCATCGGGTAATCATTTGGATAAAACTATCAGGATTTGGAAACAGGATGCTTGA

Protein Analysis

333

Amino Acids

36.3

Weight (kDa)

8.42

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR19_1st PF23389 22 - 173 4.7e-06 WDR19 first beta-propeller
Beta-prop_EML_2 PF23414 30 - 116 2.9e-14 Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 31 - 197 9.3e-17 MABP1/WDR62 second WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 33 - 115 1.3e-09 CAF1B/HIR1 beta-propeller domain
WD40_Prp19 PF24814 33 - 117 1.4e-14 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 34 - 156 9.9e-20 WDR3 second beta-propeller domain
WD40_Gbeta PF25391 34 - 329 1.3e-31 G protein beta WD-40 repeat protein
WDR55 PF24796 34 - 162 5.4e-17 WDR55
WD40 PF00400 35 - 71 1.4e-10 WD domain, G-beta repeat
WD40_CDC20-Fz PF24807 35 - 86 5.4e-06 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 35 - 116 3.3e-10 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 36 - 116 1e-18 WDR3 first beta-propeller domain
EIF3I PF24805 38 - 116 8.3e-13 EIF3I
Beta-prop_WDR5 PF25175 38 - 330 7e-131 WDR5 beta-propeller domain
Beta-prop_EML PF23409 40 - 234 4.7e-14 Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st PF24817 40 - 97 2.2e-09 WDHD1 first WD40 domain
Beta-prop_Aladin PF25460 41 - 115 2.1e-07 Aladin seven-bladed propeller
Beta-prop_THOC3 PF25174 42 - 117 1.8e-18 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 76 - 170 1.4e-14 CDC20/Fizzy WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 76 - 174 1.5e-13 CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_1st PF24780 77 - 185 1e-06 MABP1/WDR62 first WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 77 - 115 3.4e-06 WDR36/Utp21 second beta-propeller domain
WD40 PF00400 77 - 113 1.6e-09 WD domain, G-beta repeat
WDR90_beta-prop_4th PF23342 89 - 216 5.3e-09 WDR90, 4th beta-propeller
Beta-prop_WDR75_1st PF23869 94 - 157 8.3e-07 WD repeat-containing protein 75 first beta-propeller
WD40_WDHD1_1st PF24817 95 - 167 6.1e-11 WDHD1 first WD40 domain
Beta-prop_EIPR1 PF23609 98 - 155 2.4e-06 EIPR1 beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 102 - 203 1.5e-09 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 104 - 232 4.8e-08 WDR36/Utp21 first beta-propeller
Beta-prop_Aladin PF25460 117 - 235 9e-11 Aladin seven-bladed propeller
Beta-prop_CAF1B_HIR1 PF24105 118 - 209 1.5e-13 CAF1B/HIR1 beta-propeller domain
WD40_Prp19 PF24814 119 - 291 1.1e-31 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 119 - 238 2.2e-24 WDR3 first beta-propeller domain
WD40 PF00400 119 - 155 1.1e-10 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 119 - 219 4.7e-12 TEP-1 second beta-propeller
EIF3I PF24805 121 - 186 3.2e-10 EIF3I
Beta-prop_WDR3_2nd PF25172 124 - 209 5.8e-15 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 124 - 289 7.9e-34 THOC3 beta-propeller domain
WDR55 PF24796 129 - 208 2.8e-09 WDR55
Beta-prop_EML_2 PF23414 133 - 291 1.2e-19 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_ACSF4 PF13570 138 - 297 6.6e-11 Beta-alanine-activating enzyme, beta-propeller
Beta-prop_WDR19_1st PF23389 140 - 292 5.7e-06 WDR19 first beta-propeller
eIF2A PF08662 142 - 241 1.9e-06 Eukaryotic translation initiation factor eIF2A
WD40 PF00400 160 - 198 1e-10 WD domain, G-beta repeat
NBCH_WD40 PF20426 165 - 310 4.4e-08 Neurobeachin beta propeller domain
WD40_WDHD1_1st PF24817 166 - 290 7.7e-15 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 167 - 318 7.3e-12 WDR36/Utp21 second beta-propeller domain
EIF3I PF24805 168 - 234 4.3e-06 EIF3I
WD40_CDC20-Fz PF24807 169 - 330 3.2e-20 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 185 - 330 5.6e-11 WDR36/Utp21 first beta-propeller
WD40_MABP1-WDR62_2nd PF24782 198 - 287 8.5e-07 MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_1st PF25173 212 - 330 2.5e-17 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 216 - 332 9.3e-13 WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd PF25047 218 - 330 1.8e-07 TEP-1 second beta-propeller
WDR55 PF24796 218 - 316 5e-08 WDR55
EIF3I PF24805 219 - 316 8.8e-06 EIF3I
Beta-prop_IFT122_1st PF23381 220 - 318 9.9e-08 IFT122 first beta-propeller
WD40_WDHD1_1st PF24817 225 - 331 3.7e-10 WDHD1 first WD40 domain
WD40 PF00400 245 - 286 4.6e-08 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 247 - 330 6.7e-07 CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_1st PF24780 262 - 330 3e-06 MABP1/WDR62 first WD40 domain
WD40_Prp19 PF24814 267 - 332 1.6e-09 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 269 - 331 1e-11 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02730
fragaria_vesca FvH4_2g23370
malus_domestica MD03G1263200.v1.1
prunus_persica Prupe.8G239500_v2.0.a1
pyrus_communis pycom03g21070
rosa_chinensis RchiOBHm_Chr6g0290821
rosa_laevigata RLG00000012171
rosa_multiflora Rmu_ssc0000069.1_g000002
rosa_roxburghii Rroxscaffold_7G00176710
rosa_rugosa Rorug06G0214900
rosa_samantha Rh6BG333200 Rh6CG338900 Rh6DG326300
rosa_wichuraiana Rw6G028300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 11
AccI GTMKAC 2 cut(s) 189, 752
AccII CGCG 1 cut(s) 44
AciI CCGC 4 cut(s) 9, 72, 131, 180
AclI AACGTT 1 cut(s) 78
AclWI GGATC 5 cut(s) 196, 445, 553, 835, 864
AcsI RAATTY 4 cut(s) 46, 149, 385, 421
AfaI GTAC 3 cut(s) 322, 706, 815
AfiI CCNNNNNNNGG 1 cut(s) 11
AflII CTTAAG 1 cut(s) 362
AgeI ACCGGT 1 cut(s) 53
AgsI TTSAA 4 cut(s) 409, 616, 745, 863
AleI CACNNNNGTG 1 cut(s) 255
AluBI AGCT 3 cut(s) 275, 503, 715
AluI AGCT 3 cut(s) 275, 503, 715
Alw26I GTCTC 2 cut(s) 443, 877
AlwI GGATC 5 cut(s) 196, 445, 553, 835, 864
AoxI GGCC 1 cut(s) 892
ApoI RAATTY 4 cut(s) 46, 149, 385, 421
AsiGI ACCGGT 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 95
AsuII TTCGAA 2 cut(s) 328, 419
BbsI GAAGAC 3 cut(s) 273, 385, 623
BccI CCATC 3 cut(s) 536, 566, 933
BceAI ACGGC 2 cut(s) 144, 178
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BcoDI GTCTC 2 cut(s) 443, 877
BfaI CTAG 5 cut(s) 116, 255, 272, 342, 887
BfmI CTRYAG 1 cut(s) 878
BfrI CTTAAG 1 cut(s) 362
BglII AGATCT 1 cut(s) 344
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 706
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 3 cut(s) 501, 583, 985
BmuI ACTGGG 1 cut(s) 486
BpiI GAAGAC 3 cut(s) 273, 385, 623
Bpu14I TTCGAA 2 cut(s) 328, 419
BpuEI CTTGAG 1 cut(s) 695
BsaWI WCCGGW 2 cut(s) 53, 928
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 481
BseGI GGATG 4 cut(s) 498, 598, 925, 1000
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 927
BseNI ACTGG 1 cut(s) 481
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 894
BshTI ACCGGT 1 cut(s) 53
BsiSI CCGG 3 cut(s) 54, 641, 929
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 11
BsmAI GTCTC 2 cut(s) 443, 877
BsmBI CGTCTC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 1 cut(s) 894
Bsp119I TTCGAA 2 cut(s) 328, 419
Bsp143I GATC 9 cut(s) 135, 201, 268, 344, 437, 545, 827, 856, 909
BspACI CCGC 4 cut(s) 9, 72, 131, 180
BspANI GGCC 1 cut(s) 894
BspCNI CTCAG 1 cut(s) 926
BspFNI CGCG 1 cut(s) 44
BspHI TCATGA 1 cut(s) 568
BspMAI CTGCAG 1 cut(s) 882
BspPI GGATC 5 cut(s) 196, 445, 553, 835, 864
BspT104I TTCGAA 2 cut(s) 328, 419
BspTI CTTAAG 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 1 cut(s) 481
BssAI RCCGGY 1 cut(s) 53
BssMI GATC 9 cut(s) 135, 201, 268, 344, 437, 545, 827, 856, 909
BssNAI GTATAC 1 cut(s) 753
Bst1107I GTATAC 1 cut(s) 753
Bst4CI ACNGT 1 cut(s) 101
BstAFI CTTAAG 1 cut(s) 362
BstBI TTCGAA 2 cut(s) 328, 419
BstDEI CTNAG 3 cut(s) 371, 657, 913
BstF5I GGATG 4 cut(s) 498, 598, 925, 1000
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 9 cut(s) 138, 204, 271, 347, 440, 548, 830, 859, 912
BstMAI GTCTC 2 cut(s) 443, 877
BstMBI GATC 9 cut(s) 135, 201, 268, 344, 437, 545, 827, 856, 909
BstSFI CTRYAG 1 cut(s) 878
BstUI CGCG 1 cut(s) 44
BstV2I GAAGAC 3 cut(s) 273, 385, 623
BstX2I RGATCY 2 cut(s) 344, 856
BstYI RGATCY 2 cut(s) 344, 856
BstZ17I GTATAC 1 cut(s) 753
BsuRI GGCC 1 cut(s) 894
BtsCI GGATG 4 cut(s) 498, 598, 925, 1000
BtsI GCAGTG 1 cut(s) 912
BtsIMutI CAGTG 2 cut(s) 912, 921
CciI TCATGA 1 cut(s) 568
Cfr10I RCCGGY 1 cut(s) 53
CseI GACGC 3 cut(s) 133, 347, 911
Csp6I GTAC 3 cut(s) 321, 705, 814
CspAI ACCGGT 1 cut(s) 53
CviAII CATG 2 cut(s) 199, 569
CviJI RGCY 6 cut(s) 94, 275, 503, 644, 715, 894
CviKI_1 RGCY 6 cut(s) 94, 275, 503, 644, 715, 894
CviQI GTAC 3 cut(s) 321, 705, 814
DdeI CTNAG 3 cut(s) 371, 657, 913
DpnI GATC 9 cut(s) 137, 203, 270, 346, 439, 547, 829, 858, 911
DpnII GATC 9 cut(s) 135, 201, 268, 344, 437, 545, 827, 856, 909
Eco32I GATATC 1 cut(s) 945
EcoRI GAATTC 1 cut(s) 46
EcoRV GATATC 1 cut(s) 945
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 2 cut(s) 202, 572
FaqI GGGAC 1 cut(s) 350
FatI CATG 2 cut(s) 198, 568
FblI GTMKAC 2 cut(s) 189, 752
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 3 cut(s) 505, 605, 912
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 5 cut(s) 116, 255, 272, 342, 887
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 894
HapII CCGG 3 cut(s) 54, 641, 929
HgaI GACGC 3 cut(s) 133, 347, 911
Hin1II CATG 2 cut(s) 202, 572
HinfI GANTC 5 cut(s) 33, 287, 330, 454, 619
HpaII CCGG 3 cut(s) 54, 641, 929
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 190, 753
Hpy188I TCNGA 6 cut(s) 84, 268, 286, 313, 832, 936
Hpy188III TCNNGA 4 cut(s) 435, 569, 698, 979
Hpy8I GTNNAC 2 cut(s) 190, 753
Hpy99I CGWCG 2 cut(s) 164, 733
HpyAV CCTTC 5 cut(s) 113, 239, 426, 596, 884
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 2 cut(s) 529, 880
HpyF3I CTNAG 3 cut(s) 371, 657, 913
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 2 cut(s) 202, 572
Kzo9I GATC 9 cut(s) 135, 201, 268, 344, 437, 545, 827, 856, 909
LweI GCATC 3 cut(s) 501, 583, 985
MaeI CTAG 5 cut(s) 116, 255, 272, 342, 887
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 8 cut(s) 14, 26, 56, 101, 122, 239, 248, 799
MalI GATC 9 cut(s) 137, 203, 270, 346, 439, 547, 829, 858, 911
MboI GATC 9 cut(s) 135, 201, 268, 344, 437, 545, 827, 856, 909
MboII GAAGA 6 cut(s) 161, 273, 385, 628, 851, 939
MflI RGATCY 2 cut(s) 344, 856
MluCI AATT 6 cut(s) 46, 149, 385, 403, 421, 838
MlyI GAGTC 2 cut(s) 42, 613
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 5 cut(s) 215, 368, 423, 460, 826
MseI TTAA 5 cut(s) 363, 402, 471, 498, 534
MslI CAYNNNNRTG 1 cut(s) 255
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 3 cut(s) 54, 641, 929
MvnI CGCG 1 cut(s) 44
NdeII GATC 9 cut(s) 135, 201, 268, 344, 437, 545, 827, 856, 909
NlaIII CATG 2 cut(s) 202, 572
NmuCI GTSAC 3 cut(s) 101, 122, 248
NspV TTCGAA 2 cut(s) 328, 419
OliI CACNNNNGTG 1 cut(s) 255
PagI TCATGA 1 cut(s) 568
PcsI WCGNNNNNNNCGW 1 cut(s) 725
PfeI GAWTC 3 cut(s) 287, 330, 454
PflMI CCANNNNNTGG 1 cut(s) 11
PinAI ACCGGT 1 cut(s) 53
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 2 cut(s) 41, 613
PpsI GAGTC 2 cut(s) 41, 613
Psp1406I AACGTT 1 cut(s) 78
PstI CTGCAG 1 cut(s) 882
PsuI RGATCY 2 cut(s) 344, 856
RsaI GTAC 3 cut(s) 322, 706, 815
RsaNI GTAC 3 cut(s) 321, 705, 814
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 5 cut(s) 363, 402, 471, 498, 534
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 9 cut(s) 135, 201, 268, 344, 437, 545, 827, 856, 909
ScaI AGTACT 1 cut(s) 706
SchI GAGTC 2 cut(s) 42, 613
SfaNI GCATC 3 cut(s) 501, 583, 985
SfcI CTRYAG 1 cut(s) 878
SfuI TTCGAA 2 cut(s) 328, 419
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 2 cut(s) 362, 710
SmoI CTYRAG 2 cut(s) 362, 710
Sse9I AATT 6 cut(s) 46, 149, 385, 403, 421, 838
SsiI CCGC 4 cut(s) 9, 72, 131, 180
SspMI CTAG 5 cut(s) 116, 255, 272, 342, 887
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 81
TaqI TCGA 7 cut(s) 328, 419, 444, 509, 521, 699, 719
TasI AATT 6 cut(s) 46, 149, 385, 403, 421, 838
TatI WGTACW 2 cut(s) 704, 813
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 3 cut(s) 287, 330, 454
Tru1I TTAA 5 cut(s) 363, 402, 471, 498, 534
Tru9I TTAA 5 cut(s) 363, 402, 471, 498, 534
TscAI CASTG 2 cut(s) 912, 921
TseFI GTSAC 3 cut(s) 101, 122, 248
Tsp45I GTSAC 3 cut(s) 101, 122, 248
TspDTI ATGAA 3 cut(s) 224, 369, 939
TspGWI ACGGA 3 cut(s) 33, 45, 175
TspRI CASTG 2 cut(s) 912, 921
Van91I CCANNNNNTGG 1 cut(s) 11
Vha464I CTTAAG 1 cut(s) 362
XapI RAATTY 4 cut(s) 46, 149, 385, 421
XmiI GTMKAC 2 cut(s) 189, 752
XspI CTAG 5 cut(s) 116, 255, 272, 342, 887
ZrmI AGTACT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.