Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0016561

Physical Location & Seq

Genomic Coordinates Forward (+)

21049348 .. 21050894

Gene Structure 1547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G239500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCCAGCAGTGGCAGTGGTCAAGCATCGCCGCCGTATAGACCCTACCGCCACCTCAAGACCCTTCGCGGCCATGAAAACGCCGTGTCGTGCGTCAAGTTCTCAAACGATGGCGACCTGCTGGCCTCGGCGTCGCTCGACAAGACCGTCATCCTCTGGTCCTCCTCCGCCCTAACTCTTCTCCGCCGCCTCGTCGGCCACTCCGAAGGCATCTCCGACCTTGCTTGGTCCTCCGACTCCCACTACATCTGCTCCGCCTCCGACGACCGCACCCTCCGCATCTGGGACGCACGCTCCTCCGCCGGCGAGTGCGTCAAGACCCTCAAAGGCCACTCCAACTTCGTTTTCTGCGTCAATTTCAATCCACAATCCAACCTCATCGTCTCCGGCTCATTCGACGAAACGATTCGTATTTGGGAGGTCAAGACGGGGAAGTGCCTCCACATCATCAGGGCTCACTCGCTGCCTGTGACCTCCGTGCACTTCAATCGAGATGGGTCGCTCATCGTCTCCGGCAGTCACGACGGGTCTTGCAAGATTTGGGACACAGCATCAGGGACTTGCTTGAAGACGCTCCTTGAGGATAAGACCGCTGCAGTCTCCTTCGCTAAGTTTTCGCCTAATGGCAAGTTCATACTCGTCGCCACTCTCAATGACACCCTCAAGCTGTGGAACTACTCAACTGGGAAGTTTTTGAAGATCTATACAGGTCATGTGAACAACGTGTATTGCGTAACATCCACATTTTCTGTGACAAATGGTAAATACATTGTTAGTGGCTCGGAGGATCACTGTGTCTACTTATGGGATCTTCAGCAGAAAACTATGGTGCAGAAACTTGAAGGCCATTCTGATACTGCCATCTCCGTTTCCTGTCATCCATCAGAAAATAAGATTGCCTCTGCAGCTCTTGAAAATGATAGAACTGTCAGGATTTGGTTTCAAGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0005929 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0015630 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022008 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030182 GO:0031175 GO:0031248 GO:0031461 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034708 GO:0034968 GO:0035097 GO:0036064 GO:0036211 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0044665 GO:0044782 GO:0048188 GO:0048468 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051276 GO:0051568 GO:0060271 GO:0070013 GO:0070925 GO:0071339 GO:0071704 GO:0071840 GO:0080008 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

318

Amino Acids

34.85

Weight (kDa)

8.28

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02730
fragaria_vesca	FvH4_2g23370
malus_domestica	MD03G1263200.v1.1
prunus_persica	Prupe.8G239500_v2.0.a1
pyrus_communis	pycom03g21070
rosa_chinensis	RchiOBHm_Chr6g0290821
rosa_laevigata	RLG00000012171
rosa_multiflora	Rmu_ssc0000069.1_g000002
rosa_roxburghii	Rroxscaffold_7G00176710
rosa_rugosa	Rorug06G0214900
rosa_samantha	Rh6BG333200 Rh6CG338900 Rh6DG326300
rosa_wichuraiana	Rw6G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
Acc36I	ACCTGC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	798
AccII	CGCG	1 cut(s)	69
AclWI	GGATC	2 cut(s)	795, 816
AcoI	YGGCCR	3 cut(s)	3, 70, 196
AcuI	CTGAAG	1 cut(s)	797
AcyI	GRCGYC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	723
AgsI	TTSAA	7 cut(s)	361, 487, 568, 697, 842, 914, 944
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	2 cut(s)	667, 908
AluI	AGCT	2 cut(s)	667, 908
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	3 cut(s)	388, 514, 604
Alw44I	GTGCAC	1 cut(s)	479
AlwI	GGATC	2 cut(s)	795, 816
AoxI	GGCC	6 cut(s)	3, 70, 123, 196, 328, 844
ApaLI	GTGCAC	1 cut(s)	479
ApeKI	GCWGC	3 cut(s)	463, 593, 905
Asp700I	GAANNNNTTC	1 cut(s)	405
AspS9I	GGNCC	2 cut(s)	159, 228
AvaII	GGWCC	2 cut(s)	159, 228
BaeGI	GKGCMC	1 cut(s)	483
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	575
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	3 cut(s)	450, 580, 917
BccI	CCATC	4 cut(s)	104, 488, 869, 889
BceAI	ACGGC	2 cut(s)	19, 68
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BcoDI	GTCTC	3 cut(s)	388, 514, 604
BfmI	CTRYAG	2 cut(s)	594, 903
BfuAI	ACCTGC	1 cut(s)	126
BglI	GCCNNNNNGGC	1 cut(s)	195
BglII	AGATCT	1 cut(s)	699
BisI	GCNGC	6 cut(s)	32, 70, 187, 464, 594, 906
BlsI	GCNGC	6 cut(s)	33, 71, 188, 465, 595, 907
Bme18I	GGWCC	2 cut(s)	159, 228
BmgT120I	GGNCC	2 cut(s)	159, 228
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	5 cut(s)	35, 219, 288, 560, 937
BmuI	ACTGGG	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	575
BpuEI	CTTGAG	3 cut(s)	41, 599, 647
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	126
BsaXI	ACNNNNNCTCC	4 cut(s)	236, 266, 278, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	688
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	3 cut(s)	150, 737, 877
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	688
BseRI	GAGGAG	2 cut(s)	154, 286
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	3 cut(s)	450, 580, 917
BsgI	GTGCAG	1 cut(s)	851
Bsh1236I	CGCG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	6 cut(s)	5, 72, 125, 198, 330, 846
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	3 cut(s)	303, 387, 513
BslFI	GGGAC	3 cut(s)	299, 557, 571
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	3 cut(s)	388, 514, 604
BsmBI	CGTCTC	2 cut(s)	388, 514
BsmFI	GGGAC	3 cut(s)	299, 557, 571
BsnI	GGCC	6 cut(s)	5, 72, 125, 198, 330, 846
Bsp1286I	GDGCHC	2 cut(s)	457, 483
Bsp143I	GATC	3 cut(s)	699, 787, 808
BspANI	GGCC	6 cut(s)	5, 72, 125, 198, 330, 846
BspFNI	CGCG	1 cut(s)	69
BspMAI	CTGCAG	2 cut(s)	598, 907
BspMI	ACCTGC	1 cut(s)	126
BspPI	GGATC	2 cut(s)	795, 816
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	688
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	3 cut(s)	699, 787, 808
BssNI	GRCGYC	1 cut(s)	131
Bst4CI	ACNGT	3 cut(s)	148, 794, 928
Bst6I	CTCTTC	1 cut(s)	183
BstACI	GRCGYC	1 cut(s)	131
BstC8I	GCNNGC	4 cut(s)	7, 123, 292, 304
BstDEI	CTNAG	1 cut(s)	609
BstF5I	GGATG	3 cut(s)	150, 737, 877
BstFNI	CGCG	1 cut(s)	69
BstKTI	GATC	3 cut(s)	702, 790, 811
BstMAI	GTCTC	3 cut(s)	388, 514, 604
BstMBI	GATC	3 cut(s)	699, 787, 808
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 276, 905
BstSFI	CTRYAG	2 cut(s)	594, 903
BstSLI	GKGCMC	1 cut(s)	483
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	3 cut(s)	450, 580, 917
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	2 cut(s)	699, 808
BstYI	RGATCY	2 cut(s)	699, 808
BsuRI	GGCC	6 cut(s)	5, 72, 125, 198, 330, 846
BtgZI	GCGATG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	150, 737, 877
BtsI	GCAGTG	2 cut(s)	16, 22
BtsIMutI	CAGTG	3 cut(s)	16, 22, 790
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	4 cut(s)	7, 123, 292, 304
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	159, 228
CseI	GACGC	6 cut(s)	82, 120, 296, 301, 340, 580
CviAII	CATG	2 cut(s)	74, 713
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	3 cut(s)	701, 789, 810
DpnII	GATC	3 cut(s)	699, 787, 808
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	3 cut(s)	3, 70, 196
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
EciI	GGCGGA	4 cut(s)	157, 173, 244, 289
Eco24I	GRGCYC	1 cut(s)	457
Eco47I	GGWCC	2 cut(s)	159, 228
Eco57I	CTGAAG	1 cut(s)	797
EcoT38I	GRGCYC	1 cut(s)	457
Esp3I	CGTCTC	2 cut(s)	388, 514
FaeI	CATG	2 cut(s)	77, 716
FaiI	YATR	7 cut(s)	39, 75, 635, 705, 714, 805, 827
FaqI	GGGAC	3 cut(s)	299, 557, 571
FatI	CATG	2 cut(s)	73, 712
FblI	GTMKAC	1 cut(s)	798
Fnu4HI	GCNGC	6 cut(s)	32, 70, 187, 464, 594, 906
FokI	GGATG	3 cut(s)	137, 724, 864
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	6 cut(s)	32, 70, 187, 464, 594, 906
GluI	GCNGC	6 cut(s)	32, 70, 187, 464, 594, 906
HaeIII	GGCC	6 cut(s)	5, 72, 125, 198, 330, 846
HapII	CCGG	3 cut(s)	303, 387, 513
HgaI	GACGC	6 cut(s)	82, 120, 296, 301, 340, 580
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	77, 716
HinfI	GANTC	2 cut(s)	236, 406
HpaII	CCGG	3 cut(s)	303, 387, 513
Hpy166II	GTNNAC	3 cut(s)	481, 718, 799
Hpy188I	TCNGA	7 cut(s)	205, 217, 235, 262, 784, 853, 886
Hpy188III	TCNNGA	8 cut(s)	58, 316, 424, 491, 521, 911, 931, 944
Hpy8I	GTNNAC	3 cut(s)	481, 718, 799
Hpy99I	CGWCG	6 cut(s)	136, 197, 266, 401, 527, 644
HpyAV	CCTTC	4 cut(s)	74, 200, 613, 836
HpyCH4III	ACNGT	3 cut(s)	148, 794, 928
HpyCH4IV	ACGT	1 cut(s)	723
HpyCH4V	TGCA	5 cut(s)	481, 534, 596, 832, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 276, 905
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	1 cut(s)	723
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	77, 716
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	699, 787, 808
LmnI	GCTCC	3 cut(s)	257, 299, 579
Lsp1109I	GCAGC	3 cut(s)	450, 580, 917
LweI	GCATC	5 cut(s)	35, 219, 288, 560, 937
MaeII	ACGT	1 cut(s)	723
MaeIII	GTNAC	4 cut(s)	469, 518, 733, 751
MalI	GATC	3 cut(s)	701, 789, 810
MboI	GATC	3 cut(s)	699, 787, 808
MboII	GAAGA	4 cut(s)	170, 580, 709, 803
MflI	RGATCY	2 cut(s)	699, 808
MhlI	GDGCHC	2 cut(s)	457, 483
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	355
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	5 cut(s)	240, 258, 285, 360, 396
Mox20I	TGGCCA	1 cut(s)	5
MreI	CGCCGGCG	1 cut(s)	302
MroNI	GCCGGC	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	952
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	3 cut(s)	303, 387, 513
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	195, 276, 905
NaeI	GCCGGC	1 cut(s)	304
NdeII	GATC	3 cut(s)	699, 787, 808
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	2 cut(s)	77, 716
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	3 cut(s)	469, 518, 751
PcsI	WCGNNNNNNNCGW	4 cut(s)	144, 201, 348, 729
PdiI	GCCGGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	6 cut(s)	33, 71, 188, 465, 595, 907
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PspPI	GGNCC	2 cut(s)	159, 228
PstI	CTGCAG	2 cut(s)	598, 907
PsuI	RGATCY	2 cut(s)	699, 808
SaqAI	TTAA	1 cut(s)	952
SatI	GCNGC	6 cut(s)	32, 70, 187, 464, 594, 906
Sau3AI	GATC	3 cut(s)	699, 787, 808
Sau96I	GGNCC	2 cut(s)	159, 228
SchI	GAGTC	1 cut(s)	230
SduI	GDGCHC	2 cut(s)	457, 483
SfaNI	GCATC	5 cut(s)	35, 219, 288, 560, 937
SfcI	CTRYAG	2 cut(s)	594, 903
SgrAI	CRCCGGYG	1 cut(s)	302
SinI	GGWCC	2 cut(s)	159, 228
SmlI	CTYRAG	3 cut(s)	56, 578, 662
SmoI	CTYRAG	3 cut(s)	56, 578, 662
Sse9I	AATT	1 cut(s)	355
TaaI	ACNGT	3 cut(s)	148, 794, 928
TaiI	ACGT	1 cut(s)	726
TaqI	TCGA	3 cut(s)	138, 396, 490
TasI	AATT	1 cut(s)	355
TauI	GCSGC	3 cut(s)	34, 72, 189
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	1 cut(s)	952
Tru9I	TTAA	1 cut(s)	952
TscAI	CASTG	3 cut(s)	16, 22, 797
TseFI	GTSAC	3 cut(s)	469, 518, 751
TseI	GCWGC	3 cut(s)	463, 593, 905
Tsp45I	GTSAC	3 cut(s)	469, 518, 751
TspDTI	ATGAA	2 cut(s)	90, 622
TspGWI	ACGGA	2 cut(s)	466, 856
TspRI	CASTG	3 cut(s)	16, 22, 797
VneI	GTGCAC	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	159, 228
XmiI	GTMKAC	1 cut(s)	798
XmnI	GAANNNNTTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.