FvH4_2g23370

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
19133152 .. 19134533
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23370.t1

Sequence Viewer

Length: 699 bp
ATGGCGAGCAGCGGCAGCGGACAACAACTGCCGCCGTACAACCCTTACCGGCATCTGAAGACTCTTCGCGGCCACGAGAGCGCCGTGTCGTGCGTCAAATTCTCCAACGACGGGAACCTCTTGGCCTCGGCGTCGTTAGACAAGACCGTAATCCTCTGGTCGTCTTCCACCCTAACCCTCCTGCGCCGCCTGGTGGGCCACTCCGAGGGCATTTCCGACCTTTCCTGGTCCTCCGACTCCCACTACATCTGCTCCGCCTCCGACGACCGCACCCTCCGCATCTGGGACGCACGCTCCCCAACAGGCGAGTGCGTCAAGACCCTCCGCGGCCACTCCGACGTCGTTTTCTGCGCCAACTTCAACCCCCAGTCCAACCTCATCGTCTCCGGCTCGTTCGACGAGACCATCCGGATTTGGGAGGTCAAGACCGGAAAGTGCCTCAAGGTCATCAGGGGCCACACGCTTCCGGTGACCTCCGTGAGCTTCAATCGCGATGGGTCGCTCATCGTCTCCGCCAGCCACGACGGGTCCTGCAAGATTTGGGACACGGAAGGGACCTGCCTCAAAACTGTAATTGATGATAAAGACGATAAAGCCCCTGCTGTTTCCTTCACCAAGTTCTCCCCTAACGGCAAATTCATACTCATCGCCACTCTTGATAATACCCTTGTGAGTCCAAGTTCTCCCTTTTTGATTTAG

Protein Analysis

233

Amino Acids

25.25

Weight (kDa)

7.63

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR41 PF25178 12 - 99 4.5e-06 WDR41
WD40_MABP1-WDR62_2nd PF24782 15 - 181 5e-18 MABP1/WDR62 second WD40 domain
WD40_Gbeta PF25391 17 - 218 5.1e-22 G protein beta WD-40 repeat protein
WDR55 PF24796 17 - 145 3.9e-17 WDR55
Beta-prop_TEP1_2nd PF25047 17 - 56 6.3e-08 TEP-1 second beta-propeller
Beta-prop_EML_2 PF23414 17 - 99 3e-14 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd PF25172 17 - 140 2.7e-22 WDR3 second beta-propeller domain
WD40 PF00400 18 - 54 6.2e-12 WD domain, G-beta repeat
WD40_Prp19 PF24814 18 - 98 1.5e-12 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 18 - 191 8.2e-26 CDC20/Fizzy WD40 domain
Beta-prop_IFT122_1st PF23381 19 - 88 3.6e-08 IFT122 first beta-propeller
Beta-prop_WDR3_1st PF25173 20 - 108 7.1e-21 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 21 - 57 6.9e-06 WDHD1 first WD40 domain
EIF3I PF24805 21 - 108 1.9e-12 EIF3I
Beta-prop_WDR5 PF25175 21 - 223 2e-88 WDR5 beta-propeller domain
Beta-prop_EML PF23409 23 - 129 1.4e-09 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 25 - 98 7.9e-11 WDR36/Utp21 second beta-propeller domain
Beta-prop_Aladin PF25460 25 - 111 3.2e-09 Aladin seven-bladed propeller
Beta-prop_THOC3 PF25174 25 - 99 6.4e-19 THOC3 beta-propeller domain
Beta-prop_WDR19_1st PF23389 36 - 191 7.5e-08 WDR19 first beta-propeller
Beta-prop_TEP1_2nd PF25047 57 - 205 3.3e-18 TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 59 - 98 9.2e-06 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 60 - 96 9e-11 WD domain, G-beta repeat
eIF2A PF08662 69 - 190 3.1e-06 Eukaryotic translation initiation factor eIF2A
WD40_MABP1-WDR62_1st PF24780 69 - 172 2.4e-07 MABP1/WDR62 first WD40 domain
WDR90_beta-prop_4th PF23342 72 - 195 7.8e-08 WDR90, 4th beta-propeller
WD40_WDHD1_1st PF24817 73 - 150 2.4e-12 WDHD1 first WD40 domain
Beta-prop_WDR75_1st PF23869 77 - 142 1.1e-07 WD repeat-containing protein 75 first beta-propeller
Beta-prop_EIPR1 PF23609 79 - 139 9.4e-07 EIPR1 beta-propeller
Beta-prop_WDR41 PF25178 79 - 152 6.4e-06 WDR41
Beta-prop_WDR90_POC16_2nd PF23393 83 - 185 5.2e-10 WDR90/POC16, second beta-propeller
Beta-prop_SCAP PF24017 85 - 184 3.3e-08 SCAP Beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 86 - 223 9.4e-12 WDR36/Utp21 first beta-propeller
Beta-prop_THOC3 PF25174 99 - 213 3.4e-22 THOC3 beta-propeller domain
WD40_Prp19 PF24814 101 - 222 1.1e-20 Prp19 WD40 domain
Beta-prop_Aladin PF25460 101 - 223 2.5e-09 Aladin seven-bladed propeller
Beta-prop_WDR3_1st PF25173 101 - 223 2.9e-23 WDR3 first beta-propeller domain
EIF3I PF24805 101 - 166 2.9e-11 EIF3I
WD40_WDHD1_1st PF24817 101 - 190 7.4e-16 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 102 - 210 2e-12 CDC20/Fizzy WD40 domain
NBCH_WD40 PF20426 102 - 145 7.5e-06 Neurobeachin beta propeller domain
WD40 PF00400 102 - 139 7.3e-11 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 104 - 186 5.1e-13 CAF1B/HIR1 beta-propeller domain
Beta-prop_EML PF23409 110 - 216 1.7e-08 Echinoderm microtubule-associated protein first beta-propeller
WDR55 PF24796 115 - 199 4e-10 WDR55
Beta-prop_EML_2 PF23414 120 - 222 5.7e-13 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 142 - 222 2.7e-07 WDR36/Utp21 second beta-propeller domain
WD40 PF00400 144 - 182 8.8e-13 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 148 - 204 1.6e-06 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02730
fragaria_vesca FvH4_2g23370
malus_domestica MD03G1263200.v1.1
prunus_persica Prupe.8G239500_v2.0.a1
pyrus_communis pycom03g21070
rosa_chinensis RchiOBHm_Chr6g0290821
rosa_laevigata RLG00000012171
rosa_multiflora Rmu_ssc0000069.1_g000002
rosa_roxburghii Rroxscaffold_7G00176710
rosa_rugosa Rorug06G0214900
rosa_samantha Rh6BG333200 Rh6CG338900 Rh6DG326300
rosa_wichuraiana Rw6G028300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 342
Acc36I ACCTGC 1 cut(s) 566
AccII CGCG 3 cut(s) 69, 327, 492
AccIII TCCGGA 1 cut(s) 408
AcoI YGGCCR 2 cut(s) 70, 328
AcsI RAATTY 2 cut(s) 98, 635
AcuI CTGAAG 1 cut(s) 77
AcyI GRCGYC 2 cut(s) 131, 339
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 5 cut(s) 111, 193, 205, 283, 415
AgsI TTSAA 2 cut(s) 361, 487
AjnI CCWGG 2 cut(s) 189, 224
AluBI AGCT 1 cut(s) 483
AluI AGCT 1 cut(s) 483
Alw26I GTCTC 3 cut(s) 388, 395, 514
Aor13HI TCCGGA 1 cut(s) 408
AoxI GGCC 5 cut(s) 70, 123, 196, 328, 454
ApeKI GCWGC 2 cut(s) 9, 15
ApoI RAATTY 2 cut(s) 98, 635
AspLEI GCGC 3 cut(s) 83, 186, 353
AspS9I GGNCC 5 cut(s) 196, 228, 454, 528, 555
AsuHPI GGTGA 2 cut(s) 481, 604
AvaII GGWCC 3 cut(s) 228, 528, 555
BauI CACGAG 1 cut(s) 74
BbsI GAAGAC 2 cut(s) 65, 156
BbvI GCAGC 2 cut(s) 21, 27
BccI CCATC 2 cut(s) 413, 488
BceAI ACGGC 3 cut(s) 19, 68, 646
BciT130I CCWGG 2 cut(s) 191, 226
BcoDI GTCTC 3 cut(s) 388, 395, 514
BfoI RGCGCY 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 566
BglI GCCNNNNNGGC 1 cut(s) 195
BisI GCNGC 7 cut(s) 10, 13, 16, 32, 70, 187, 328
BlsI GCNGC 7 cut(s) 11, 14, 17, 33, 71, 188, 329
Bme1390I CCNGG 2 cut(s) 191, 226
Bme18I GGWCC 3 cut(s) 228, 528, 555
BmgT120I GGNCC 5 cut(s) 196, 228, 454, 528, 555
BmiI GGNNCC 4 cut(s) 116, 455, 529, 556
BmrFI CCNGG 2 cut(s) 191, 226
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 2 cut(s) 61, 288
BmuI ACTGGG 1 cut(s) 361
BpiI GAAGAC 2 cut(s) 65, 156
BpuEI CTTGAG 1 cut(s) 425
BsaHI GRCGYC 2 cut(s) 131, 339
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 3 cut(s) 126, 204, 325
BsaWI WCCGGW 3 cut(s) 408, 428, 466
BsaXI ACNNNNNCTCC 4 cut(s) 236, 266, 278, 308
Bsc4I CCNNNNNNNGG 5 cut(s) 111, 193, 205, 283, 415
Bse118I RCCGGY 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 367
BseAI TCCGGA 1 cut(s) 408
BseBI CCWGG 2 cut(s) 191, 226
BseDI CCNNGG 3 cut(s) 126, 204, 325
BseGI GGATG 1 cut(s) 405
BseLI CCNNNNNNNGG 5 cut(s) 111, 193, 205, 283, 415
BseNI ACTGG 1 cut(s) 367
BseXI GCAGC 2 cut(s) 21, 27
Bsh1236I CGCG 3 cut(s) 69, 327, 492
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 5 cut(s) 72, 125, 198, 330, 456
BsiEI CGRYCG 1 cut(s) 268
BsiSI CCGG 5 cut(s) 49, 387, 409, 429, 467
BslFI GGGAC 3 cut(s) 299, 557, 568
BslI CCNNNNNNNGG 5 cut(s) 111, 193, 205, 283, 415
BsmAI GTCTC 3 cut(s) 388, 395, 514
BsmBI CGTCTC 2 cut(s) 388, 514
BsmFI GGGAC 3 cut(s) 299, 557, 568
BsnI GGCC 5 cut(s) 72, 125, 198, 330, 456
Bso31I GGTCTC 1 cut(s) 395
Bsp13I TCCGGA 1 cut(s) 408
Bsp68I TCGCGA 1 cut(s) 492
BspANI GGCC 5 cut(s) 72, 125, 198, 330, 456
BspEI TCCGGA 1 cut(s) 408
BspFNI CGCG 3 cut(s) 69, 327, 492
BspLI GGNNCC 4 cut(s) 116, 455, 529, 556
BspMI ACCTGC 1 cut(s) 566
BspTNI GGTCTC 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 48
BsrI ACTGG 1 cut(s) 367
BssAI RCCGGY 1 cut(s) 48
BssECI CCNNGG 3 cut(s) 126, 204, 325
BssNI GRCGYC 2 cut(s) 131, 339
BssSI CACGAG 1 cut(s) 74
Bst2BI CACGAG 1 cut(s) 74
Bst2UI CCWGG 2 cut(s) 191, 226
Bst4CI ACNGT 2 cut(s) 148, 571
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 2 cut(s) 131, 339
BstC8I GCNNGC 3 cut(s) 7, 292, 517
BstDSI CCRYGG 1 cut(s) 325
BstEII GGTNACC 1 cut(s) 469
BstF5I GGATG 1 cut(s) 405
BstFNI CGCG 3 cut(s) 69, 327, 492
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 3 cut(s) 83, 186, 353
BstMAI GTCTC 3 cut(s) 388, 395, 514
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 5 cut(s) 15, 78, 195, 276, 489
BstNI CCWGG 2 cut(s) 191, 226
BstPI GGTNACC 1 cut(s) 469
BstSCI CCNGG 2 cut(s) 189, 224
BstUI CGCG 3 cut(s) 69, 327, 492
BstV1I GCAGC 2 cut(s) 21, 27
BstV2I GAAGAC 2 cut(s) 65, 156
BsuRI GGCC 5 cut(s) 72, 125, 198, 330, 456
BtgI CCRYGG 1 cut(s) 325
BtgZI GCGATG 2 cut(s) 507, 631
BtsCI GGATG 1 cut(s) 405
BtuMI TCGCGA 1 cut(s) 492
BveI ACCTGC 1 cut(s) 566
Cac8I GCNNGC 3 cut(s) 7, 292, 517
CfoI GCGC 3 cut(s) 83, 186, 353
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 5 cut(s) 196, 228, 454, 528, 555
Cfr42I CCGCGG 1 cut(s) 328
CseI GACGC 4 cut(s) 82, 120, 296, 301
Csp6I GTAC 1 cut(s) 37
CviJI RGCY 9 cut(s) 72, 125, 198, 330, 390, 456, 483, 519, 596
CviKI_1 RGCY 9 cut(s) 72, 125, 198, 330, 390, 456, 483, 519, 596
CviQI GTAC 1 cut(s) 37
EaeI YGGCCR 2 cut(s) 70, 328
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EciI GGCGGA 2 cut(s) 244, 502
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 3 cut(s) 228, 528, 555
Eco57I CTGAAG 1 cut(s) 77
Eco91I GGTNACC 1 cut(s) 469
EcoO109I RGGNCCY 2 cut(s) 528, 555
EcoO65I GGTNACC 1 cut(s) 469
EcoRII CCWGG 2 cut(s) 189, 224
Esp3I CGTCTC 2 cut(s) 388, 514
FaiI YATR 1 cut(s) 641
FaqI GGGAC 3 cut(s) 299, 557, 568
Fnu4HI GCNGC 7 cut(s) 10, 13, 16, 32, 70, 187, 328
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 7 cut(s) 10, 13, 16, 32, 70, 187, 328
GlaI GCGC 3 cut(s) 82, 185, 352
GluI GCNGC 7 cut(s) 10, 13, 16, 32, 70, 187, 328
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 5 cut(s) 72, 125, 198, 330, 456
HapII CCGG 5 cut(s) 49, 387, 409, 429, 467
HgaI GACGC 4 cut(s) 82, 120, 296, 301
HhaI GCGC 3 cut(s) 83, 186, 353
Hin1I GRCGYC 2 cut(s) 131, 339
Hin6I GCGC 3 cut(s) 81, 184, 351
HinP1I GCGC 3 cut(s) 81, 184, 351
HinfI GANTC 3 cut(s) 61, 236, 673
HpaII CCGG 5 cut(s) 49, 387, 409, 429, 467
HphI GGTGA 2 cut(s) 481, 604
Hpy188I TCNGA 6 cut(s) 57, 205, 217, 235, 262, 337
Hpy188III TCNNGA 5 cut(s) 316, 409, 424, 491, 656
Hpy99I CGWCG 7 cut(s) 113, 136, 266, 341, 344, 401, 527
HpyAV CCTTC 2 cut(s) 545, 619
HpyCH4III ACNGT 2 cut(s) 148, 571
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 1 cut(s) 534
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 78, 195, 276, 489
HpySE526I ACGT 1 cut(s) 339
Hsp92I GRCGYC 2 cut(s) 131, 339
HspAI GCGC 3 cut(s) 81, 184, 351
Kpn2I TCCGGA 1 cut(s) 408
KspI CCGCGG 1 cut(s) 328
LmnI GCTCC 2 cut(s) 257, 299
Lsp1109I GCAGC 2 cut(s) 21, 27
LweI GCATC 2 cut(s) 61, 288
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 469
MboII GAAGA 3 cut(s) 56, 70, 156
MluCI AATT 3 cut(s) 98, 573, 635
MlyI GAGTC 3 cut(s) 55, 230, 682
MmeI TCCRAC 6 cut(s) 129, 240, 258, 285, 360, 396
MroI TCCGGA 1 cut(s) 408
MspA1I CMGCKG 3 cut(s) 12, 18, 327
MspI CCGG 5 cut(s) 49, 387, 409, 429, 467
MspR9I CCNGG 2 cut(s) 191, 226
MvaI CCWGG 2 cut(s) 191, 226
MvnI CGCG 3 cut(s) 69, 327, 492
MwoI GCNNNNNNNGC 5 cut(s) 15, 78, 195, 276, 489
NlaIV GGNNCC 4 cut(s) 116, 455, 529, 556
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 469
NruI TCGCGA 1 cut(s) 492
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PkrI GCNGC 7 cut(s) 11, 14, 17, 33, 71, 188, 329
PleI GAGTC 3 cut(s) 55, 230, 681
PpsI GAGTC 3 cut(s) 55, 230, 681
PpuMI RGGWCCY 2 cut(s) 528, 555
Psp5II RGGWCCY 2 cut(s) 528, 555
Psp6I CCWGG 2 cut(s) 189, 224
PspEI GGTNACC 1 cut(s) 469
PspGI CCWGG 2 cut(s) 189, 224
PspN4I GGNNCC 4 cut(s) 116, 455, 529, 556
PspPI GGNCC 5 cut(s) 196, 228, 454, 528, 555
PspPPI RGGWCCY 2 cut(s) 528, 555
RruI TCGCGA 1 cut(s) 492
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SacII CCGCGG 1 cut(s) 328
SatI GCNGC 7 cut(s) 10, 13, 16, 32, 70, 187, 328
Sau96I GGNCC 5 cut(s) 196, 228, 454, 528, 555
SchI GAGTC 3 cut(s) 55, 230, 682
ScrFI CCNGG 2 cut(s) 191, 226
SetI ASST 9 cut(s) 120, 222, 342, 378, 423, 447, 476, 485, 560
SfaNI GCATC 2 cut(s) 61, 288
Sfr303I CCGCGG 1 cut(s) 328
SgrBI CCGCGG 1 cut(s) 328
SinI GGWCC 3 cut(s) 228, 528, 555
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 3 cut(s) 98, 573, 635
StyD4I CCNGG 2 cut(s) 189, 224
TaaI ACNGT 2 cut(s) 148, 571
TaiI ACGT 1 cut(s) 342
TaqI TCGA 1 cut(s) 396
TasI AATT 3 cut(s) 98, 573, 635
TauI GCSGC 5 cut(s) 15, 34, 72, 189, 330
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 2 cut(s) 9, 15
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 1 cut(s) 628
TspGWI ACGGA 2 cut(s) 466, 563
VpaK11BI GGWCC 3 cut(s) 228, 528, 555
XapI RAATTY 2 cut(s) 98, 635
ZraI GACGTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.