Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0016561

Physical Location & Seq

Genomic Coordinates Forward (+)

34901851 .. 34904118

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1263200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTCACGTGATTGTGATTTGAAGAGATTAAAATCTTACCCCGTCTTCGGCTGTGGGGCTGGTGAAATTGTGGTGCCAAAGAAGGCGATGGCAAGCAGTGGCAGTGGCCAAGCATCGCCTTACAGGCCCTACCGCCACCTCAAGACCCTCCGCGGGCACGAAGGCCCCATCGCCTGCGTCAAATACTCCAACGACGGCACCCTTCTGGCCTCGGCGTCCCTCGACAAGACCGTAATCCTCTGGTCCGCCTCCACCCTAACCCTTTTCCGCCGCCTTTTCGGCCACTCCGAAGGCATCTCCGACCTTGCCTGGTCTTCCGACTCCCACTACATCTGCTCCGCCTCCGATGATCGGACCCTCCGTATCTGGGACGCCCGCTCCCCCTCCGGCGAGTGCGTCAAGACCCTCCGCGGCCACTCCGACCGCGTCTTCTGCGTCAATTTCAATCCCCAGTCCCACCTCATCGTCTCCGGCTCTTTCGACGAAACGATGCGTATTTGGGAGGTCAAGACCGGGAAGTGCCTCCACGCTATCCGGGCTCACTCGATGCCTCTGACCTCCGTGAGCTTCAATCGCGACGGTTCGATTGTCGTCTCCGCCAGCCACGACGGGTCCTGTAAGATTTGGGACACCGAGTCGGGGACTCTGCTGAAAACGCTGATTGACGATAAATCAGCCTCCGTCTCCTTCGCCAAGTTCTCGCCTAATGGCAAGTTCATACTCGTCGCCACTCTCAACGACACCCTCAGGCTGTCAAACTACGCGGCGGGGAAGTTTCTGAAGATCTATACAGGTCATGTGAACAAAGTGTATTGCATAACATCTACATTTTCTGTGACAAATGGTAAATACATTGTGAGCGGGTCGGAGGATCACTGCGTCTACTTATGGGATCTCCAGCCGAGAACTATGGTTCAGAAACTTGAAGGCCATACGGACACCGTCATCGCTGTTTCCTGCCATCATCAGGAGAACAAGATTGCCTCTGCGTCTCTGGATAAAACCATCAAGATTTGGGTTCAAGATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0005929 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0015630 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022008 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030182 GO:0031175 GO:0031248 GO:0031461 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034708 GO:0034968 GO:0035097 GO:0036064 GO:0036211 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0044665 GO:0044782 GO:0048188 GO:0048468 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051276 GO:0051568 GO:0060271 GO:0070013 GO:0070925 GO:0071339 GO:0071704 GO:0071840 GO:0080008 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

344

Amino Acids

37.79

Weight (kDa)

8.88

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_CAF1B_HIR1	PF24105	43 - 127	3e-11	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	44 - 209	7.2e-16	MABP1/WDR62 second WD40 domain
WD40_Gbeta	PF25391	45 - 339	2.4e-29	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	45 - 126	8e-12	TEP-1 second beta-propeller
Beta-prop_EML_2	PF23414	45 - 127	9.1e-13	Echinoderm microtubule-associated protein second beta-propeller
WDR55	PF24796	45 - 212	1.4e-20	WDR55
WD40	PF00400	46 - 82	6.9e-10	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	46 - 211	7.9e-31	WDR3 second beta-propeller domain
PROPPIN	PF21032	47 - 124	7.8e-06	PROPPIN
Beta-prop_IFT122_1st	PF23381	47 - 116	2e-06	IFT122 first beta-propeller
WD40_Prp19	PF24814	47 - 126	9.1e-11	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	48 - 134	2.3e-18	WDR3 first beta-propeller domain
EIF3I	PF24805	49 - 134	2.7e-10	EIF3I
Beta-prop_WDR5	PF25175	49 - 339	2.2e-127	WDR5 beta-propeller domain
Beta-prop_EML	PF23409	52 - 156	4.7e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3	PF25174	53 - 127	2.9e-18	THOC3 beta-propeller domain
Beta-prop_Aladin	PF25460	53 - 138	2.5e-08	Aladin seven-bladed propeller
Beta-prop_WDR19_1st	PF23389	54 - 184	9.7e-06	WDR19 first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	56 - 127	8.5e-10	WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz	PF24807	90 - 182	1.5e-14	CDC20/Fizzy WD40 domain
WD40	PF00400	90 - 124	2.4e-10	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	95 - 341	6.3e-51	THOC3 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	97 - 201	1e-08	MABP1/WDR62 first WD40 domain
WDR90_beta-prop_4th	PF23342	100 - 229	3.3e-10	WDR90, 4th beta-propeller
Beta-prop_WDR75_1st	PF23869	105 - 170	3.8e-08	WD repeat-containing protein 75 first beta-propeller
Beta-prop_EIPR1	PF23609	107 - 167	4e-06	EIPR1 beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	112 - 213	1.1e-09	WDR90/POC16, second beta-propeller
Beta-prop_SCAP	PF24017	113 - 223	4.2e-08	SCAP Beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	114 - 240	1e-10	WDR36/Utp21 first beta-propeller
Beta-prop_Aladin	PF25460	127 - 248	1.6e-11	Aladin seven-bladed propeller
EIF3I	PF24805	129 - 197	1e-11	EIF3I
Beta-prop_WDR3_1st	PF25173	129 - 250	2.7e-24	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	129 - 301	2.5e-31	Prp19 WD40 domain
WD40	PF00400	130 - 167	9.3e-11	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	131 - 178	3.7e-09	WDHD1 first WD40 domain
Beta-prop_TEP1_2nd	PF25047	132 - 228	7.1e-11	TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	132 - 218	1e-12	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	135 - 251	4.4e-16	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	138 - 243	2.3e-09	Echinoderm microtubule-associated protein first beta-propeller
WDR55	PF24796	141 - 227	1.7e-09	WDR55
Beta-prop_EML_2	PF23414	144 - 307	1.7e-17	Echinoderm microtubule-associated protein second beta-propeller
NBCH_WD40	PF20426	147 - 216	6.1e-07	Neurobeachin beta propeller domain
WD40	PF00400	172 - 210	5.6e-10	WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd	PF25168	173 - 246	1e-06	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	178 - 306	3.1e-14	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	197 - 342	2.1e-12	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	222 - 340	5.4e-14	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	223 - 340	7.9e-19	WDR3 first beta-propeller domain
WDR55	PF24796	226 - 339	1.7e-09	WDR55
Beta-prop_WDR3_2nd	PF25172	227 - 342	5.3e-12	WDR3 second beta-propeller domain
Beta-prop_ACSF4	PF13570	232 - 337	9.5e-06	Beta-alanine-activating enzyme, beta-propeller
WD40_WDHD1_1st	PF24817	237 - 340	1.4e-11	WDHD1 first WD40 domain
WD40	PF00400	257 - 298	4.3e-07	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	259 - 339	2.8e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	277 - 340	1.6e-08	TEP-1 second beta-propeller
WD40_Prp19	PF24814	279 - 341	2.8e-11	Prp19 WD40 domain
WD40	PF00400	304 - 339	5e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02730
fragaria_vesca	FvH4_2g23370
malus_domestica	MD03G1263200.v1.1
prunus_persica	Prupe.8G239500_v2.0.a1
pyrus_communis	pycom03g21070
rosa_chinensis	RchiOBHm_Chr6g0290821
rosa_laevigata	RLG00000012171
rosa_multiflora	Rmu_ssc0000069.1_g000002
rosa_roxburghii	Rroxscaffold_7G00176710
rosa_rugosa	Rorug06G0214900
rosa_samantha	Rh6BG333200 Rh6CG338900 Rh6DG326300
rosa_wichuraiana	Rw6G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	73, 197
AccBSI	CCGCTC	2 cut(s)	378, 861
AccI	GTMKAC	1 cut(s)	882
AccII	CGCG	5 cut(s)	153, 411, 426, 576, 764
AclWI	GGATC	2 cut(s)	879, 900
AcoI	YGGCCR	3 cut(s)	106, 280, 412
AcuI	CTGAAG	1 cut(s)	800
AcvI	CACGTG	1 cut(s)	8
AcyI	GRCGYC	2 cut(s)	215, 372
AfiI	CCNNNNNNNGG	6 cut(s)	47, 153, 351, 367, 639, 967
AgsI	TTSAA	5 cut(s)	22, 445, 571, 926, 1022
AhdI	GACNNNNNGTC	1 cut(s)	634
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	1 cut(s)	567
AluI	AGCT	1 cut(s)	567
Alw26I	GTCTC	4 cut(s)	472, 598, 688, 996
AlwI	GGATC	2 cut(s)	879, 900
AoxI	GGCC	7 cut(s)	106, 125, 163, 207, 280, 412, 928
AspS9I	GGNCC	5 cut(s)	126, 164, 243, 354, 612
AsuC2I	CCSGG	2 cut(s)	514, 536
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	3 cut(s)	243, 354, 612
AxyI	CCTNAGG	1 cut(s)	746
BaeGI	GKGCMC	1 cut(s)	159
BalI	TGGCCA	1 cut(s)	108
BanI	GGYRCC	2 cut(s)	73, 197
BanII	GRGCYC	1 cut(s)	541
BbrPI	CACGTG	1 cut(s)	8
BbsI	GAAGAC	3 cut(s)	37, 306, 421
BccI	CCATC	4 cut(s)	82, 176, 969, 1013
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	310
BcnI	CCSGG	2 cut(s)	514, 536
BcoDI	GTCTC	4 cut(s)	472, 598, 688, 996
BglI	GCCNNNNNGGC	2 cut(s)	124, 279
BglII	AGATCT	1 cut(s)	783
BisI	GCNGC	3 cut(s)	271, 412, 765
BlsI	GCNGC	3 cut(s)	272, 413, 766
Bme1390I	CCNGG	3 cut(s)	310, 514, 536
Bme18I	GGWCC	3 cut(s)	243, 354, 612
BmeRI	GACNNNNNGTC	1 cut(s)	634
BmgT120I	GGNCC	5 cut(s)	126, 164, 243, 354, 612
BmiI	GGNNCC	5 cut(s)	75, 166, 199, 356, 613
BmrFI	CCNGG	3 cut(s)	310, 514, 536
BmrI	ACTGGG	1 cut(s)	445
BmsI	GCATC	4 cut(s)	122, 303, 480, 537
BmuI	ACTGGG	1 cut(s)	445
BpiI	GAAGAC	3 cut(s)	37, 306, 421
BpmI	CTGGAG	1 cut(s)	881
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	2 cut(s)	514, 536
BsaAI	YACGTR	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	31
BsaHI	GRCGYC	2 cut(s)	215, 372
BsaJI	CCNNGG	3 cut(s)	151, 210, 409
BsaXI	ACNNNNNCTCC	4 cut(s)	320, 350, 362, 392
Bsc4I	CCNNNNNNNGG	6 cut(s)	47, 153, 351, 367, 639, 967
Bse1I	ACTGG	1 cut(s)	451
Bse21I	CCTNAGG	1 cut(s)	746
Bse8I	GATNNNNATC	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	3 cut(s)	151, 210, 409
BseJI	GATNNNNATC	1 cut(s)	31
BseLI	CCNNNNNNNGG	6 cut(s)	47, 153, 351, 367, 639, 967
BseMII	CTCAG	1 cut(s)	760
BseNI	ACTGG	1 cut(s)	451
BseSI	GKGCMC	1 cut(s)	159
Bsh1236I	CGCG	5 cut(s)	153, 411, 426, 576, 764
Bsh1285I	CGRYCG	1 cut(s)	424
BshFI	GGCC	7 cut(s)	108, 127, 165, 209, 282, 414, 930
BshNI	GGYRCC	2 cut(s)	73, 197
BsiEI	CGRYCG	1 cut(s)	424
BsiSI	CCGG	4 cut(s)	387, 471, 513, 535
BslFI	GGGAC	5 cut(s)	202, 383, 439, 641, 655
BslI	CCNNNNNNNGG	6 cut(s)	47, 153, 351, 367, 639, 967
BsmAI	GTCTC	4 cut(s)	472, 598, 688, 996
BsmBI	CGTCTC	4 cut(s)	472, 598, 688, 996
BsmFI	GGGAC	5 cut(s)	202, 383, 439, 641, 655
BsnI	GGCC	7 cut(s)	108, 127, 165, 209, 282, 414, 930
Bsp1286I	GDGCHC	2 cut(s)	159, 541
Bsp143I	GATC	4 cut(s)	349, 783, 871, 892
Bsp68I	TCGCGA	1 cut(s)	576
BspANI	GGCC	7 cut(s)	108, 127, 165, 209, 282, 414, 930
BspCNI	CTCAG	1 cut(s)	759
BspFNI	CGCG	5 cut(s)	153, 411, 426, 576, 764
BspLI	GGNNCC	5 cut(s)	75, 166, 199, 356, 613
BspPI	GGATC	2 cut(s)	879, 900
BspT107I	GGYRCC	2 cut(s)	73, 197
BsrBI	CCGCTC	2 cut(s)	378, 861
BsrI	ACTGG	1 cut(s)	451
BssECI	CCNNGG	3 cut(s)	151, 210, 409
BssMI	GATC	4 cut(s)	349, 783, 871, 892
BssNI	GRCGYC	2 cut(s)	215, 372
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	232, 581, 943
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	2 cut(s)	215, 372
BstBAI	YACGTR	1 cut(s)	8
BstC8I	GCNNGC	5 cut(s)	94, 155, 175, 376, 601
BstDEI	CTNAG	1 cut(s)	746
BstDSI	CCRYGG	2 cut(s)	151, 409
BstFNI	CGCG	5 cut(s)	153, 411, 426, 576, 764
BstKTI	GATC	4 cut(s)	352, 786, 874, 895
BstMAI	GTCTC	4 cut(s)	472, 598, 688, 996
BstMBI	GATC	4 cut(s)	349, 783, 871, 892
BstMCI	CGRYCG	1 cut(s)	424
BstMWI	GCNNNNNNNGC	6 cut(s)	124, 279, 432, 536, 573, 655
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	3 cut(s)	308, 512, 534
BstSLI	GKGCMC	1 cut(s)	159
BstUI	CGCG	5 cut(s)	153, 411, 426, 576, 764
BstV2I	GAAGAC	3 cut(s)	37, 306, 421
BstX2I	RGATCY	2 cut(s)	783, 892
BstYI	RGATCY	2 cut(s)	783, 892
Bsu36I	CCTNAGG	1 cut(s)	746
BsuRI	GGCC	7 cut(s)	108, 127, 165, 209, 282, 414, 930
BtgI	CCRYGG	2 cut(s)	151, 409
BtgZI	GCGATG	4 cut(s)	99, 101, 154, 931
BtsI	GCAGTG	3 cut(s)	103, 109, 874
BtsIMutI	CAGTG	3 cut(s)	103, 109, 874
BtuMI	TCGCGA	1 cut(s)	576
Cac8I	GCNNGC	5 cut(s)	94, 155, 175, 376, 601
Cfr13I	GGNCC	5 cut(s)	126, 164, 243, 354, 612
Cfr42I	CCGCGG	2 cut(s)	154, 412
CseI	GACGC	8 cut(s)	166, 204, 380, 385, 415, 424, 868, 978
CviAII	CATG	1 cut(s)	797
DdeI	CTNAG	1 cut(s)	746
DpnI	GATC	4 cut(s)	351, 785, 873, 894
DpnII	GATC	4 cut(s)	349, 783, 871, 892
DriI	GACNNNNNGTC	1 cut(s)	634
EaeI	YGGCCR	3 cut(s)	106, 280, 412
Eam1104I	CTCTTC	1 cut(s)	17
Eam1105I	GACNNNNNGTC	1 cut(s)	634
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	4 cut(s)	235, 257, 328, 586
Eco24I	GRGCYC	1 cut(s)	541
Eco47I	GGWCC	3 cut(s)	243, 354, 612
Eco57I	CTGAAG	1 cut(s)	800
Eco72I	CACGTG	1 cut(s)	8
Eco81I	CCTNAGG	1 cut(s)	746
EcoO109I	RGGNCCY	3 cut(s)	126, 164, 612
EcoRII	CCWGG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	541
Esp3I	CGTCTC	4 cut(s)	472, 598, 688, 996
FaeI	CATG	1 cut(s)	800
FaiI	YATR	7 cut(s)	719, 789, 798, 818, 889, 911, 933
FaqI	GGGAC	5 cut(s)	202, 383, 439, 641, 655
FatI	CATG	1 cut(s)	796
FauI	CCCGC	4 cut(s)	146, 383, 760, 854
FblI	GTMKAC	1 cut(s)	882
Fnu4HI	GCNGC	3 cut(s)	271, 412, 765
FriOI	GRGCYC	1 cut(s)	541
Fsp4HI	GCNGC	3 cut(s)	271, 412, 765
GluI	GCNGC	3 cut(s)	271, 412, 765
GsuI	CTGGAG	1 cut(s)	881
HaeIII	GGCC	7 cut(s)	108, 127, 165, 209, 282, 414, 930
HapII	CCGG	4 cut(s)	387, 471, 513, 535
HgaI	GACGC	8 cut(s)	166, 204, 380, 385, 415, 424, 868, 978
Hin1I	GRCGYC	2 cut(s)	215, 372
Hin1II	CATG	1 cut(s)	800
HinfI	GANTC	3 cut(s)	320, 635, 643
HpaII	CCGG	4 cut(s)	387, 471, 513, 535
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	2 cut(s)	802, 883
Hpy188III	TCNNGA	8 cut(s)	142, 400, 508, 575, 968, 995, 1009, 1022
Hpy8I	GTNNAC	2 cut(s)	802, 883
Hpy99I	CGWCG	5 cut(s)	197, 485, 581, 611, 728
HpyAV	CCTTC	6 cut(s)	76, 155, 212, 284, 697, 920
HpyCH4III	ACNGT	3 cut(s)	232, 581, 943
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	816
HpyF10VI	GCNNNNNNNGC	6 cut(s)	124, 279, 432, 536, 573, 655
HpyF3I	CTNAG	1 cut(s)	746
HpySE526I	ACGT	1 cut(s)	7
Hsp92I	GRCGYC	2 cut(s)	215, 372
Hsp92II	CATG	1 cut(s)	800
KspI	CCGCGG	2 cut(s)	154, 412
Kzo9I	GATC	4 cut(s)	349, 783, 871, 892
LmnI	GCTCC	2 cut(s)	341, 383
LweI	GCATC	4 cut(s)	122, 303, 480, 537
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	2 cut(s)	3, 835
MalI	GATC	4 cut(s)	351, 785, 873, 894
MbiI	CCGCTC	2 cut(s)	378, 861
MboI	GATC	4 cut(s)	349, 783, 871, 892
MboII	GAAGA	5 cut(s)	34, 37, 306, 421, 793
MflI	RGATCY	2 cut(s)	783, 892
MhlI	GDGCHC	2 cut(s)	159, 541
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	2 cut(s)	66, 439
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	3 cut(s)	314, 637, 644
MmeI	TCCRAC	5 cut(s)	213, 324, 342, 444, 846
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	2 cut(s)	29, 1030
Msp20I	TGGCCA	1 cut(s)	108
MspA1I	CMGCKG	2 cut(s)	153, 411
MspI	CCGG	4 cut(s)	387, 471, 513, 535
MspR9I	CCNGG	3 cut(s)	310, 514, 536
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	5 cut(s)	153, 411, 426, 576, 764
MwoI	GCNNNNNNNGC	6 cut(s)	124, 279, 432, 536, 573, 655
NciI	CCSGG	2 cut(s)	514, 536
NdeII	GATC	4 cut(s)	349, 783, 871, 892
NlaIII	CATG	1 cut(s)	800
NlaIV	GGNNCC	5 cut(s)	75, 166, 199, 356, 613
NmeAIII	GCCGAG	2 cut(s)	191, 927
NmuCI	GTSAC	2 cut(s)	3, 835
NruI	TCGCGA	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	3 cut(s)	228, 285, 358
PflFI	GACNNNGTC	2 cut(s)	425, 941
PkrI	GCNGC	3 cut(s)	272, 413, 766
PleI	GAGTC	3 cut(s)	314, 637, 643
PmaCI	CACGTG	1 cut(s)	8
PmlI	CACGTG	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	314, 637, 643
Ppu21I	YACGTR	1 cut(s)	8
PpuMI	RGGWCCY	1 cut(s)	612
Psp5II	RGGWCCY	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	308
PspCI	CACGTG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	5 cut(s)	75, 166, 199, 356, 613
PspPI	GGNCC	5 cut(s)	126, 164, 243, 354, 612
PspPPI	RGGWCCY	1 cut(s)	612
PsuI	RGATCY	2 cut(s)	783, 892
PsyI	GACNNNGTC	2 cut(s)	425, 941
RruI	TCGCGA	1 cut(s)	576
SacII	CCGCGG	2 cut(s)	154, 412
SaqAI	TTAA	2 cut(s)	29, 1030
SatI	GCNGC	3 cut(s)	271, 412, 765
Sau3AI	GATC	4 cut(s)	349, 783, 871, 892
Sau96I	GGNCC	5 cut(s)	126, 164, 243, 354, 612
SchI	GAGTC	3 cut(s)	314, 637, 644
ScrFI	CCNGG	3 cut(s)	310, 514, 536
SduI	GDGCHC	2 cut(s)	159, 541
SetI	ASST	8 cut(s)	10, 141, 306, 462, 507, 560, 569, 796
SfaNI	GCATC	4 cut(s)	122, 303, 480, 537
Sfr303I	CCGCGG	2 cut(s)	154, 412
SgrBI	CCGCGG	2 cut(s)	154, 412
SinI	GGWCC	3 cut(s)	243, 354, 612
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	66, 439
StyD4I	CCNGG	3 cut(s)	308, 512, 534
TaaI	ACNGT	3 cut(s)	232, 581, 943
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	4 cut(s)	222, 480, 545, 584
TasI	AATT	2 cut(s)	66, 439
TauI	GCSGC	3 cut(s)	273, 414, 767
Tru1I	TTAA	2 cut(s)	29, 1030
Tru9I	TTAA	2 cut(s)	29, 1030
TscAI	CASTG	3 cut(s)	103, 109, 881
TseFI	GTSAC	2 cut(s)	3, 835
Tsp45I	GTSAC	2 cut(s)	3, 835
TspDTI	ATGAA	1 cut(s)	706
TspGWI	ACGGA	4 cut(s)	350, 550, 670, 950
TspRI	CASTG	3 cut(s)	103, 109, 881
Tth111I	GACNNNGTC	2 cut(s)	425, 941
VpaK11BI	GGWCC	3 cut(s)	243, 354, 612
XmiI	GTMKAC	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.