Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000069.1

Orthogroup ID

OG0016561

Physical Location & Seq

Genomic Coordinates Forward (+)

4477 .. 5232

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000069.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atggcgagcagtggcagtgggcaacaactgccgccgtacaacccttaccggcacctgaagactcttcgcggccacgagagcgccgtgtcgtgcgtcaaattctctaacgacggaaccctcttggcctcggcgtcattagacaagaccgtgatcctctggtcgtctgacaccctagacctcctgcgccgcctggtgggacactccgagggcatctccgacctttcctggtcctccgactcccactacatctgctccgcctccgatgaccgcaccctccgcatctgggacgcactctccctcaccggcgagtgcgtcaagaccctccgcggccactccgacctcgttttctgcgccaacttcaacccccagtccaacctcatcgtctccggctcgttcgacgagacgattcggatttgggaggtcaagaccggcaagtgcctccacgtcatcagggcccactcgcttccggtgacctccgtgagcttcaatcgcgatgggtcgctcatcgtctccgccagtcacgacgggtcgtgcaagatttgggacaccgctaaagggacctgcttgaaaaccctaattgacgataaggtccctgccgtttccttcgccaagttctcccccaacggaaaattcatactcatcgccactctagataatacccttgtaagtcccttgattttccttctctttcaaattttcagtgtcaaaagctatcatctttttctctttgtggttacagtggaagttatgatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0005929 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0015630 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022008 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030182 GO:0031175 GO:0031248 GO:0031461 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034708 GO:0034968 GO:0035097 GO:0036064 GO:0036211 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0044665 GO:0044782 GO:0048188 GO:0048468 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051276 GO:0051568 GO:0060271 GO:0070013 GO:0070925 GO:0071339 GO:0071704 GO:0071840 GO:0080008 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

251

Amino Acids

27.58

Weight (kDa)

7.1

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02730
fragaria_vesca	FvH4_2g23370
malus_domestica	MD03G1263200.v1.1
prunus_persica	Prupe.8G239500_v2.0.a1
pyrus_communis	pycom03g21070
rosa_chinensis	RchiOBHm_Chr6g0290821
rosa_laevigata	RLG00000012171
rosa_multiflora	Rmu_ssc0000069.1_g000002
rosa_roxburghii	Rroxscaffold_7G00176710
rosa_rugosa	Rorug06G0214900
rosa_samantha	Rh6BG333200 Rh6CG338900 Rh6DG326300
rosa_wichuraiana	Rw6G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	587
Acc36I	ACCTGC	1 cut(s)	569
AccB1I	GGYRCC	1 cut(s)	51
AccII	CGCG	3 cut(s)	69, 327, 492
AclWI	GGATC	1 cut(s)	145
AcoI	YGGCCR	2 cut(s)	70, 328
AcsI	RAATTY	3 cut(s)	98, 629, 693
AcuI	CTGAAG	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	3 cut(s)	193, 283, 555
AgsI	TTSAA	4 cut(s)	361, 487, 568, 692
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	2 cut(s)	189, 224
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
AluBI	AGCT	2 cut(s)	483, 711
AluI	AGCT	2 cut(s)	483, 711
Alw26I	GTCTC	3 cut(s)	388, 395, 514
AlwI	GGATC	1 cut(s)	145
AoxI	GGCC	4 cut(s)	70, 123, 328, 453
ApaI	GGGCCC	1 cut(s)	457
ApoI	RAATTY	3 cut(s)	98, 629, 693
AspLEI	GCGC	3 cut(s)	83, 186, 353
AspS9I	GGNCC	5 cut(s)	228, 453, 454, 558, 589
AsuHPI	GGTGA	2 cut(s)	292, 481
AvaII	GGWCC	3 cut(s)	228, 558, 589
BaeGI	GKGCMC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	457
BauI	CACGAG	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	65
BccI	CCATC	1 cut(s)	488
BceAI	ACGGC	3 cut(s)	19, 68, 581
BciT130I	CCWGG	2 cut(s)	191, 226
BcoDI	GTCTC	3 cut(s)	388, 395, 514
BfaI	CTAG	2 cut(s)	173, 650
BfoI	RGCGCY	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	569
BisI	GCNGC	4 cut(s)	32, 70, 187, 328
BlsI	GCNGC	4 cut(s)	33, 71, 188, 329
Bme1390I	CCNGG	2 cut(s)	191, 226
Bme18I	GGWCC	3 cut(s)	228, 558, 589
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	5 cut(s)	228, 453, 454, 558, 589
BmiI	GGNNCC	5 cut(s)	53, 115, 455, 559, 591
BmrFI	CCNGG	2 cut(s)	191, 226
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	2 cut(s)	219, 288
BmuI	ACTGGG	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	65
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	3 cut(s)	126, 204, 325
BsaWI	WCCGGW	1 cut(s)	466
BsaXI	ACNNNNNCTCC	4 cut(s)	236, 266, 278, 308
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 283, 555
Bse118I	RCCGGY	3 cut(s)	48, 302, 428
Bse1I	ACTGG	2 cut(s)	367, 516
BseBI	CCWGG	2 cut(s)	191, 226
BseDI	CCNNGG	3 cut(s)	126, 204, 325
BseLI	CCNNNNNNNGG	3 cut(s)	193, 283, 555
BseNI	ACTGG	2 cut(s)	367, 516
BseSI	GKGCMC	1 cut(s)	457
Bsh1236I	CGCG	3 cut(s)	69, 327, 492
BshFI	GGCC	4 cut(s)	72, 125, 330, 455
BshNI	GGYRCC	1 cut(s)	51
BsiSI	CCGG	5 cut(s)	49, 303, 387, 429, 467
BslFI	GGGAC	6 cut(s)	210, 299, 557, 571, 575, 654
BslI	CCNNNNNNNGG	3 cut(s)	193, 283, 555
BsmAI	GTCTC	3 cut(s)	388, 395, 514
BsmBI	CGTCTC	3 cut(s)	388, 395, 514
BsmFI	GGGAC	6 cut(s)	210, 299, 557, 571, 575, 654
BsnI	GGCC	4 cut(s)	72, 125, 330, 455
Bsp120I	GGGCCC	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	1 cut(s)	150
Bsp68I	TCGCGA	1 cut(s)	492
BspANI	GGCC	4 cut(s)	72, 125, 330, 455
BspFNI	CGCG	3 cut(s)	69, 327, 492
BspLI	GGNNCC	5 cut(s)	53, 115, 455, 559, 591
BspMI	ACCTGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	51
BsrFI	RCCGGY	3 cut(s)	48, 302, 428
BsrI	ACTGG	2 cut(s)	367, 516
BssAI	RCCGGY	3 cut(s)	48, 302, 428
BssECI	CCNNGG	3 cut(s)	126, 204, 325
BssMI	GATC	1 cut(s)	150
BssNI	GRCGYC	1 cut(s)	131
BssSI	CACGAG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	74
Bst2UI	CCWGG	2 cut(s)	191, 226
Bst4CI	ACNGT	2 cut(s)	148, 739
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	7
BstDSI	CCRYGG	1 cut(s)	325
BstEII	GGTNACC	1 cut(s)	469
BstFNI	CGCG	3 cut(s)	69, 327, 492
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	3 cut(s)	83, 186, 353
BstKTI	GATC	1 cut(s)	153
BstMAI	GTCTC	3 cut(s)	388, 395, 514
BstMBI	GATC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 78, 276, 489
BstNI	CCWGG	2 cut(s)	191, 226
BstPI	GGTNACC	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	189, 224
BstSLI	GKGCMC	1 cut(s)	457
BstUI	CGCG	3 cut(s)	69, 327, 492
BstV2I	GAAGAC	1 cut(s)	65
BsuRI	GGCC	4 cut(s)	72, 125, 330, 455
BtgI	CCRYGG	1 cut(s)	325
BtgZI	GCGATG	2 cut(s)	507, 625
BtrI	CACGTC	1 cut(s)	445
BtsI	GCAGTG	2 cut(s)	16, 22
BtsIMutI	CAGTG	4 cut(s)	16, 22, 706, 744
BtuMI	TCGCGA	1 cut(s)	492
BveI	ACCTGC	1 cut(s)	569
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	3 cut(s)	83, 186, 353
Cfr10I	RCCGGY	3 cut(s)	48, 302, 428
Cfr13I	GGNCC	5 cut(s)	228, 453, 454, 558, 589
Cfr42I	CCGCGG	1 cut(s)	328
CseI	GACGC	4 cut(s)	82, 120, 296, 301
Csp6I	GTAC	1 cut(s)	37
CviJI	RGCY	7 cut(s)	72, 125, 330, 390, 455, 483, 711
CviKI_1	RGCY	7 cut(s)	72, 125, 330, 390, 455, 483, 711
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
DrdI	GACNNNNNNGTC	1 cut(s)	587
DseDI	GACNNNNNNGTC	1 cut(s)	587
EaeI	YGGCCR	2 cut(s)	70, 328
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	2 cut(s)	244, 502
Eco24I	GRGCYC	1 cut(s)	457
Eco47I	GGWCC	3 cut(s)	228, 558, 589
Eco57I	CTGAAG	1 cut(s)	77
Eco91I	GGTNACC	1 cut(s)	469
EcoO109I	RGGNCCY	3 cut(s)	453, 558, 589
EcoO65I	GGTNACC	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	189, 224
EcoT38I	GRGCYC	1 cut(s)	457
Esp3I	CGTCTC	3 cut(s)	388, 395, 514
FaiI	YATR	2 cut(s)	635, 749
FaqI	GGGAC	6 cut(s)	210, 299, 557, 571, 575, 654
Fnu4HI	GCNGC	4 cut(s)	32, 70, 187, 328
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	4 cut(s)	32, 70, 187, 328
FspBI	CTAG	2 cut(s)	173, 650
GlaI	GCGC	3 cut(s)	82, 185, 352
GluI	GCNGC	4 cut(s)	32, 70, 187, 328
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	4 cut(s)	72, 125, 330, 455
HapII	CCGG	5 cut(s)	49, 303, 387, 429, 467
HgaI	GACGC	4 cut(s)	82, 120, 296, 301
HhaI	GCGC	3 cut(s)	83, 186, 353
Hin1I	GRCGYC	1 cut(s)	131
Hin6I	GCGC	3 cut(s)	81, 184, 351
HinP1I	GCGC	3 cut(s)	81, 184, 351
HinfI	GANTC	3 cut(s)	61, 236, 406
HpaII	CCGG	5 cut(s)	49, 303, 387, 429, 467
HphI	GGTGA	2 cut(s)	292, 481
Hpy188I	TCNGA	7 cut(s)	166, 205, 217, 235, 262, 337, 411
Hpy188III	TCNNGA	5 cut(s)	316, 424, 491, 521, 650
Hpy99I	CGWCG	3 cut(s)	113, 401, 527
HpyAV	CCTTC	2 cut(s)	613, 692
HpyCH4III	ACNGT	2 cut(s)	148, 739
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	1 cut(s)	534
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 78, 276, 489
HpySE526I	ACGT	1 cut(s)	444
Hsp92I	GRCGYC	1 cut(s)	131
HspAI	GCGC	3 cut(s)	81, 184, 351
KspI	CCGCGG	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	257
LweI	GCATC	2 cut(s)	219, 288
MaeI	CTAG	2 cut(s)	173, 650
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	3 cut(s)	469, 518, 733
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	2 cut(s)	56, 70
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	4 cut(s)	98, 576, 629, 693
MlyI	GAGTC	2 cut(s)	55, 230
MmeI	TCCRAC	4 cut(s)	240, 258, 360, 396
MspA1I	CMGCKG	1 cut(s)	327
MspI	CCGG	5 cut(s)	49, 303, 387, 429, 467
MspR9I	CCNGG	2 cut(s)	191, 226
MvaI	CCWGG	2 cut(s)	191, 226
MvnI	CGCG	3 cut(s)	69, 327, 492
MwoI	GCNNNNNNNGC	4 cut(s)	28, 78, 276, 489
NdeII	GATC	1 cut(s)	150
NlaIV	GGNNCC	5 cut(s)	53, 115, 455, 559, 591
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	2 cut(s)	469, 518
NruI	TCGCGA	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	4 cut(s)	33, 71, 188, 329
PleI	GAGTC	2 cut(s)	55, 230
PpsI	GAGTC	2 cut(s)	55, 230
PpuMI	RGGWCCY	2 cut(s)	558, 589
Psp5II	RGGWCCY	2 cut(s)	558, 589
Psp6I	CCWGG	2 cut(s)	189, 224
PspEI	GGTNACC	1 cut(s)	469
PspGI	CCWGG	2 cut(s)	189, 224
PspN4I	GGNNCC	5 cut(s)	53, 115, 455, 559, 591
PspOMI	GGGCCC	1 cut(s)	453
PspPI	GGNCC	5 cut(s)	228, 453, 454, 558, 589
PspPPI	RGGWCCY	2 cut(s)	558, 589
RruI	TCGCGA	1 cut(s)	492
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SacII	CCGCGG	1 cut(s)	328
SatI	GCNGC	4 cut(s)	32, 70, 187, 328
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	5 cut(s)	228, 453, 454, 558, 589
SchI	GAGTC	2 cut(s)	55, 230
ScrFI	CCNGG	2 cut(s)	191, 226
SduI	GDGCHC	1 cut(s)	457
SfaNI	GCATC	2 cut(s)	219, 288
Sfr303I	CCGCGG	1 cut(s)	328
SgrAI	CRCCGGYG	1 cut(s)	302
SgrBI	CCGCGG	1 cut(s)	328
SinI	GGWCC	3 cut(s)	228, 558, 589
Sse9I	AATT	4 cut(s)	98, 576, 629, 693
SspMI	CTAG	2 cut(s)	173, 650
StyD4I	CCNGG	2 cut(s)	189, 224
TaaI	ACNGT	2 cut(s)	148, 739
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	1 cut(s)	396
TasI	AATT	4 cut(s)	98, 576, 629, 693
TauI	GCSGC	4 cut(s)	34, 72, 189, 330
TfiI	GAWTC	1 cut(s)	406
TscAI	CASTG	4 cut(s)	16, 22, 706, 744
TseFI	GTSAC	2 cut(s)	469, 518
Tsp45I	GTSAC	2 cut(s)	469, 518
TspDTI	ATGAA	1 cut(s)	622
TspGWI	ACGGA	3 cut(s)	126, 466, 639
TspRI	CASTG	4 cut(s)	16, 22, 706, 744
VpaK11BI	GGWCC	3 cut(s)	228, 558, 589
XapI	RAATTY	3 cut(s)	98, 629, 693
XbaI	TCTAGA	1 cut(s)	649
XspI	CTAG	2 cut(s)	173, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.