Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0016561

Physical Location & Seq

Genomic Coordinates Forward (+)

21406324 .. 21408989

Gene Structure 2666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAGTGACCAAGAGAAGGGGACAATGAGAATATTTAACACATTAGCTGTATTTCAAGAATTAAAGTCTTACTCCGTCTTCAGCCGTGGGGCTGGTGAAATTGTGGTACCAAAGAAGGCGATGGCAAGCAGTGGCAGTGGCCAAGCATCGCCTTACAGGCCCTACCGCCACCTCAAGACCCTCCGCGGCCACGAAGGCCCCATCGCCTGCGTCAAATACTCCAACGACGGCACCCTTCTGGCCTCGGCGTCCACCGACAAGACCGTAATCCTCTGGTCCGCCTCCGCCCTAACCCTTTTCCGCCGCCTTTTCGGCCACTCCGACGGCATCTCCGACCTTGCCTGGTCTTCCGACTCCCACTACATCTGCTCCGCCTCCGACGATCGGACCCTCCGTATCTGGGACGCCCGCTCCCCCTCCGGCGAGTGCGTCAAGACCCTCCGCGGCCACTCCGACCGCGTCTTCTGCGTCAATTTCAATCCCCAGTCCCACCTCATCGTCTCCGGCTCCTTCGACGAAACGATGCGTATTTGGGAGGTCAAGACCGGGAAGTGCCTCCACGCTATCCGGGCCCACTCGATGCCTCTGACCTCCGTGAGCTTCAATCGCGACGGTTCGCTTGTCGTCTCCGCCAGCCACGACGGGTCCTGTAAGATTTGGGACACCGAGTCGGGAACTCTGCTGAAGACGCTGATTGACGATAAATCAGCCTCCGTCTCCTTCGCCAAGTTCTCGCCTAATGGCAAGTTCATACTCGTCGCCACTCTCAATGACACCCTCAGGCTGTCAAACTACGCGGCGGGGAAGTTTCTGAAGATCTATACAGGTCATGTGAACAAGGTGTTTTGCATAACATCTACATTTTCTGTGACAAATGGTAAATACATTGTGAGCGGGTCGGAGGATCACTGCGTCTACTTATGGGATCTCCAGCCGAGAACAATGGTTCAGAAACTCGAAGGCCATACGGACACTGTCATCGCTGTTTCCTGCCATCATCAGGAGAACAAGATTGCCTCTGCCAATTTTGACCCGAAAGAGTATCAGTTCTTGGACGAAGACGGAGTTGTGGAAGACATGGATGGCTACACGAACTACCTTTCTCTTGAATACGACGCGGTTTGGGACACCAAGCCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0005929 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0015630 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022008 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030182 GO:0031175 GO:0031248 GO:0031461 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034708 GO:0034968 GO:0035097 GO:0036064 GO:0036211 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0044665 GO:0044782 GO:0048188 GO:0048468 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051276 GO:0051568 GO:0060271 GO:0070013 GO:0070925 GO:0071339 GO:0071704 GO:0071840 GO:0080008 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

381

Amino Acids

42.08

Weight (kDa)

6.7

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02730
fragaria_vesca	FvH4_2g23370
malus_domestica	MD03G1263200.v1.1
prunus_persica	Prupe.8G239500_v2.0.a1
pyrus_communis	pycom03g21070
rosa_chinensis	RchiOBHm_Chr6g0290821
rosa_laevigata	RLG00000012171
rosa_multiflora	Rmu_ssc0000069.1_g000002
rosa_roxburghii	Rroxscaffold_7G00176710
rosa_rugosa	Rorug06G0214900
rosa_samantha	Rh6BG333200 Rh6CG338900 Rh6DG326300
rosa_wichuraiana	Rw6G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	106
AccB1I	GGYRCC	2 cut(s)	106, 230
AccBSI	CCGCTC	2 cut(s)	411, 894
AccI	GTMKAC	1 cut(s)	915
AccII	CGCG	6 cut(s)	186, 444, 459, 609, 797, 1118
AclWI	GGATC	2 cut(s)	912, 933
AcoI	YGGCCR	4 cut(s)	139, 187, 313, 445
AcuI	CTGAAG	3 cut(s)	64, 704, 833
AcyI	GRCGYC	2 cut(s)	248, 405
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	4 cut(s)	16, 384, 400, 1000
AgsI	TTSAA	4 cut(s)	56, 478, 604, 1109
AhdI	GACNNNNNGTC	1 cut(s)	667
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	2 cut(s)	47, 600
AluI	AGCT	2 cut(s)	47, 600
Alw26I	GTCTC	3 cut(s)	505, 631, 721
AlwI	GGATC	2 cut(s)	912, 933
AoxI	GGCC	9 cut(s)	139, 158, 187, 196, 240, 313, 445, 570, 961
ApaI	GGGCCC	1 cut(s)	574
Asp718I	GGTACC	1 cut(s)	106
AspS9I	GGNCC	7 cut(s)	159, 197, 276, 387, 570, 571, 645
AsuC2I	CCSGG	2 cut(s)	547, 569
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	3 cut(s)	276, 387, 645
AxyI	CCTNAGG	1 cut(s)	779
BaeGI	GKGCMC	1 cut(s)	574
BalI	TGGCCA	1 cut(s)	141
BanI	GGYRCC	2 cut(s)	106, 230
BanII	GRGCYC	1 cut(s)	574
BbsI	GAAGAC	6 cut(s)	70, 339, 454, 692, 1065, 1080
BccI	CCATC	4 cut(s)	115, 209, 1002, 1076
BceAI	ACGGC	3 cut(s)	69, 244, 340
BciT130I	CCWGG	1 cut(s)	343
BcnI	CCSGG	2 cut(s)	547, 569
BcoDI	GTCTC	3 cut(s)	505, 631, 721
BglI	GCCNNNNNGGC	3 cut(s)	157, 195, 312
BglII	AGATCT	1 cut(s)	816
BisI	GCNGC	4 cut(s)	187, 304, 445, 798
BlsI	GCNGC	4 cut(s)	188, 305, 446, 799
Bme1390I	CCNGG	3 cut(s)	343, 547, 569
Bme18I	GGWCC	3 cut(s)	276, 387, 645
BmeRI	GACNNNNNGTC	1 cut(s)	667
BmgT120I	GGNCC	7 cut(s)	159, 197, 276, 387, 570, 571, 645
BmiI	GGNNCC	7 cut(s)	108, 199, 232, 389, 508, 572, 646
BmrFI	CCNGG	3 cut(s)	343, 547, 569
BmrI	ACTGGG	1 cut(s)	478
BmsI	GCATC	4 cut(s)	155, 336, 513, 570
BmuI	ACTGGG	1 cut(s)	478
BpiI	GAAGAC	6 cut(s)	70, 339, 454, 692, 1065, 1080
BpmI	CTGGAG	1 cut(s)	914
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	2 cut(s)	547, 569
BsaHI	GRCGYC	2 cut(s)	248, 405
BsaJI	CCNNGG	4 cut(s)	85, 184, 243, 442
BsaXI	ACNNNNNCTCC	6 cut(s)	314, 344, 353, 383, 395, 425
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 384, 400, 1000
Bse1I	ACTGG	1 cut(s)	484
Bse21I	CCTNAGG	1 cut(s)	779
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	4 cut(s)	85, 184, 243, 442
BseGI	GGATG	2 cut(s)	1087, 1136
BseLI	CCNNNNNNNGG	4 cut(s)	16, 384, 400, 1000
BseMII	CTCAG	1 cut(s)	793
BseNI	ACTGG	1 cut(s)	484
BseSI	GKGCMC	1 cut(s)	574
Bsh1236I	CGCG	6 cut(s)	186, 444, 459, 609, 797, 1118
Bsh1285I	CGRYCG	2 cut(s)	385, 457
BshFI	GGCC	9 cut(s)	141, 160, 189, 198, 242, 315, 447, 572, 963
BshNI	GGYRCC	2 cut(s)	106, 230
BsiEI	CGRYCG	2 cut(s)	385, 457
BsiSI	CCGG	4 cut(s)	420, 504, 546, 568
BslFI	GGGAC	5 cut(s)	34, 416, 472, 674, 1139
BslI	CCNNNNNNNGG	4 cut(s)	16, 384, 400, 1000
BsmAI	GTCTC	3 cut(s)	505, 631, 721
BsmBI	CGTCTC	3 cut(s)	505, 631, 721
BsmFI	GGGAC	5 cut(s)	34, 416, 472, 674, 1139
BsnI	GGCC	9 cut(s)	141, 160, 189, 198, 242, 315, 447, 572, 963
Bsp120I	GGGCCC	1 cut(s)	570
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	4 cut(s)	382, 816, 904, 925
Bsp68I	TCGCGA	1 cut(s)	609
BspANI	GGCC	9 cut(s)	141, 160, 189, 198, 242, 315, 447, 572, 963
BspCNI	CTCAG	1 cut(s)	792
BspFNI	CGCG	6 cut(s)	186, 444, 459, 609, 797, 1118
BspLI	GGNNCC	7 cut(s)	108, 199, 232, 389, 508, 572, 646
BspPI	GGATC	2 cut(s)	912, 933
BspT107I	GGYRCC	2 cut(s)	106, 230
BsrBI	CCGCTC	2 cut(s)	411, 894
BsrI	ACTGG	1 cut(s)	484
BssECI	CCNNGG	4 cut(s)	85, 184, 243, 442
BssMI	GATC	4 cut(s)	382, 816, 904, 925
BssNI	GRCGYC	2 cut(s)	248, 405
Bst2UI	CCWGG	1 cut(s)	343
Bst4CI	ACNGT	3 cut(s)	265, 614, 976
BstACI	GRCGYC	2 cut(s)	248, 405
BstC8I	GCNNGC	4 cut(s)	127, 208, 409, 634
BstDEI	CTNAG	1 cut(s)	779
BstDSI	CCRYGG	3 cut(s)	85, 184, 442
BstF5I	GGATG	2 cut(s)	1087, 1136
BstFNI	CGCG	6 cut(s)	186, 444, 459, 609, 797, 1118
BstKTI	GATC	4 cut(s)	385, 819, 907, 928
BstMAI	GTCTC	3 cut(s)	505, 631, 721
BstMBI	GATC	4 cut(s)	382, 816, 904, 925
BstMCI	CGRYCG	2 cut(s)	385, 457
BstMWI	GCNNNNNNNGC	7 cut(s)	157, 195, 312, 465, 569, 606, 688
BstNI	CCWGG	1 cut(s)	343
BstSCI	CCNGG	3 cut(s)	341, 545, 567
BstSLI	GKGCMC	1 cut(s)	574
BstUI	CGCG	6 cut(s)	186, 444, 459, 609, 797, 1118
BstV2I	GAAGAC	6 cut(s)	70, 339, 454, 692, 1065, 1080
BstX2I	RGATCY	2 cut(s)	816, 925
BstYI	RGATCY	2 cut(s)	816, 925
Bsu36I	CCTNAGG	1 cut(s)	779
BsuRI	GGCC	9 cut(s)	141, 160, 189, 198, 242, 315, 447, 572, 963
BtgI	CCRYGG	3 cut(s)	85, 184, 442
BtgZI	GCGATG	4 cut(s)	132, 134, 187, 964
BtsCI	GGATG	2 cut(s)	1087, 1136
BtsI	GCAGTG	3 cut(s)	136, 142, 907
BtsIMutI	CAGTG	4 cut(s)	136, 142, 907, 972
BtuMI	TCGCGA	1 cut(s)	609
Cac8I	GCNNGC	4 cut(s)	127, 208, 409, 634
Cfr13I	GGNCC	7 cut(s)	159, 197, 276, 387, 570, 571, 645
Cfr42I	CCGCGG	2 cut(s)	187, 445
CseI	GACGC	9 cut(s)	199, 237, 413, 418, 448, 457, 697, 901, 1124
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	2 cut(s)	830, 1078
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	1 cut(s)	779
DpnI	GATC	4 cut(s)	384, 818, 906, 927
DpnII	GATC	4 cut(s)	382, 816, 904, 925
DriI	GACNNNNNGTC	1 cut(s)	667
EaeI	YGGCCR	4 cut(s)	139, 187, 313, 445
Eam1105I	GACNNNNNGTC	1 cut(s)	667
EciI	GGCGGA	5 cut(s)	268, 274, 290, 361, 619
Eco24I	GRGCYC	1 cut(s)	574
Eco47I	GGWCC	3 cut(s)	276, 387, 645
Eco57I	CTGAAG	3 cut(s)	64, 704, 833
Eco81I	CCTNAGG	1 cut(s)	779
EcoO109I	RGGNCCY	3 cut(s)	159, 197, 645
EcoRII	CCWGG	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	574
Esp3I	CGTCTC	3 cut(s)	505, 631, 721
FaeI	CATG	2 cut(s)	833, 1081
FaiI	YATR	7 cut(s)	752, 822, 831, 851, 922, 966, 1079
FaqI	GGGAC	5 cut(s)	34, 416, 472, 674, 1139
FatI	CATG	2 cut(s)	829, 1077
FauI	CCCGC	3 cut(s)	416, 793, 887
FblI	GTMKAC	1 cut(s)	915
Fnu4HI	GCNGC	4 cut(s)	187, 304, 445, 798
FokI	GGATG	2 cut(s)	1094, 1123
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	4 cut(s)	187, 304, 445, 798
GluI	GCNGC	4 cut(s)	187, 304, 445, 798
GsuI	CTGGAG	1 cut(s)	914
HaeIII	GGCC	9 cut(s)	141, 160, 189, 198, 242, 315, 447, 572, 963
HapII	CCGG	4 cut(s)	420, 504, 546, 568
HgaI	GACGC	9 cut(s)	199, 237, 413, 418, 448, 457, 697, 901, 1124
Hin1I	GRCGYC	2 cut(s)	248, 405
Hin1II	CATG	2 cut(s)	833, 1081
HinfI	GANTC	2 cut(s)	353, 668
HpaII	CCGG	4 cut(s)	420, 504, 546, 568
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	3 cut(s)	252, 835, 916
Hpy188III	TCNNGA	9 cut(s)	56, 175, 433, 541, 608, 672, 1001, 1106, 1140
Hpy8I	GTNNAC	3 cut(s)	252, 835, 916
Hpy99I	CGWCG	8 cut(s)	230, 326, 383, 518, 614, 644, 761, 1118
HpyAV	CCTTC	7 cut(s)	10, 109, 188, 245, 520, 730, 953
HpyCH4III	ACNGT	3 cut(s)	265, 614, 976
HpyCH4V	TGCA	1 cut(s)	849
HpyF10VI	GCNNNNNNNGC	7 cut(s)	157, 195, 312, 465, 569, 606, 688
HpyF3I	CTNAG	1 cut(s)	779
Hsp92I	GRCGYC	2 cut(s)	248, 405
Hsp92II	CATG	2 cut(s)	833, 1081
KpnI	GGTACC	1 cut(s)	110
KspI	CCGCGG	2 cut(s)	187, 445
Kzo9I	GATC	4 cut(s)	382, 816, 904, 925
LmnI	GCTCC	3 cut(s)	374, 416, 512
LweI	GCATC	4 cut(s)	155, 336, 513, 570
MaeIII	GTNAC	2 cut(s)	5, 868
MalI	GATC	4 cut(s)	384, 818, 906, 927
MbiI	CCGCTC	2 cut(s)	411, 894
MboI	GATC	4 cut(s)	382, 816, 904, 925
MboII	GAAGA	7 cut(s)	70, 339, 454, 697, 826, 1070, 1085
MflI	RGATCY	2 cut(s)	816, 925
MhlI	GDGCHC	1 cut(s)	574
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	4 cut(s)	59, 99, 472, 1024
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	347, 677
MmeI	TCCRAC	7 cut(s)	246, 345, 357, 375, 402, 477, 879
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	2 cut(s)	36, 62
Msp20I	TGGCCA	1 cut(s)	141
MspA1I	CMGCKG	2 cut(s)	186, 444
MspI	CCGG	4 cut(s)	420, 504, 546, 568
MspR9I	CCNGG	3 cut(s)	343, 547, 569
MvaI	CCWGG	1 cut(s)	343
MvnI	CGCG	6 cut(s)	186, 444, 459, 609, 797, 1118
MwoI	GCNNNNNNNGC	7 cut(s)	157, 195, 312, 465, 569, 606, 688
NciI	CCSGG	2 cut(s)	547, 569
NdeII	GATC	4 cut(s)	382, 816, 904, 925
NlaIII	CATG	2 cut(s)	833, 1081
NlaIV	GGNNCC	7 cut(s)	108, 199, 232, 389, 508, 572, 646
NmeAIII	GCCGAG	2 cut(s)	224, 960
NmuCI	GTSAC	2 cut(s)	5, 868
NruI	TCGCGA	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	3 cut(s)	318, 330, 391
PflFI	GACNNNGTC	2 cut(s)	458, 974
PkrI	GCNGC	4 cut(s)	188, 305, 446, 799
Ple19I	CGATCG	1 cut(s)	385
PleI	GAGTC	2 cut(s)	347, 676
PpsI	GAGTC	2 cut(s)	347, 676
PpuMI	RGGWCCY	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	7 cut(s)	108, 199, 232, 389, 508, 572, 646
PspOMI	GGGCCC	1 cut(s)	570
PspPI	GGNCC	7 cut(s)	159, 197, 276, 387, 570, 571, 645
PspPPI	RGGWCCY	1 cut(s)	645
PsuI	RGATCY	2 cut(s)	816, 925
PsyI	GACNNNGTC	2 cut(s)	458, 974
PvuI	CGATCG	1 cut(s)	385
RruI	TCGCGA	1 cut(s)	609
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SacII	CCGCGG	2 cut(s)	187, 445
SaqAI	TTAA	2 cut(s)	36, 62
SatI	GCNGC	4 cut(s)	187, 304, 445, 798
Sau3AI	GATC	4 cut(s)	382, 816, 904, 925
Sau96I	GGNCC	7 cut(s)	159, 197, 276, 387, 570, 571, 645
SchI	GAGTC	2 cut(s)	347, 677
ScrFI	CCNGG	3 cut(s)	343, 547, 569
SduI	GDGCHC	1 cut(s)	574
SfaNI	GCATC	4 cut(s)	155, 336, 513, 570
SfiI	GGCCNNNNNGGCC	1 cut(s)	195
Sfr303I	CCGCGG	2 cut(s)	187, 445
SgrBI	CCGCGG	2 cut(s)	187, 445
SinI	GGWCC	3 cut(s)	276, 387, 645
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	4 cut(s)	59, 99, 472, 1024
SspI	AATATT	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	341, 545, 567
TaaI	ACNGT	3 cut(s)	265, 614, 976
TaqI	TCGA	3 cut(s)	513, 578, 957
TasI	AATT	4 cut(s)	59, 99, 472, 1024
TauI	GCSGC	4 cut(s)	189, 306, 447, 800
Tru1I	TTAA	2 cut(s)	36, 62
Tru9I	TTAA	2 cut(s)	36, 62
TscAI	CASTG	4 cut(s)	136, 142, 914, 979
TseFI	GTSAC	2 cut(s)	5, 868
Tsp45I	GTSAC	2 cut(s)	5, 868
TspDTI	ATGAA	1 cut(s)	739
TspGWI	ACGGA	6 cut(s)	64, 383, 583, 703, 983, 1077
TspRI	CASTG	4 cut(s)	136, 142, 914, 979
Tth111I	GACNNNGTC	2 cut(s)	458, 974
VpaK11BI	GGWCC	3 cut(s)	276, 387, 645
XmiI	GTMKAC	1 cut(s)	915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.