Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0016561

Physical Location & Seq

Genomic Coordinates Reverse (-)

34324521 .. 34327751

Gene Structure 3231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0214900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3231 bp

ATGAGGTTCCGTTTTGAGGAAAGCTGGTTTGGAAAGGATCAATGTACGGAGATTATTCAGAGAAACTGGGCTATGCCTCTTACGGGTAACCTACTACACCAAATTGGTGCAAAGGCTCATACGGCAGGCCAGCAGCTTCTTCAATGGCACTTGATTGATGTACAAAAACAAAAGGCTGAGTTGAAGGAAGTTCAAGAGAAACTTTTAGCCATTAAGAAGGAGCCGTACTCATCTGAGCAGTATGAAGAGCAACGCAGGCTTCATGTGCGGCAAAGTCAGTTACTTGCTATTCAAGAGAAGTATTGGAGGCAGCGGTCCAGAGCCATATGGCTAAAAGATGGGGATCGAAATTCCGCTTATTTCCATCGAAAGGCTTCAAACAAAAGAGATAAAAACACAATCAAGGGTCTTATGACTCCAGCAGGTGTTTGGCAGGATAATTCCACTACACTTCGACATATGATCTATGAATATTATTCACAGATTTTCACTAGTGCGCCTGTTGATGATGAAGCTATATCAACAATTTTCAAAGCGACCCCAATGAAAGTCACAACAGCCATGAATGAAGATTTGAATTTTCCCTACTCTGATGAAGAGATCAGAGCTGCACTTTTTCAAATGCATCCATCAAAAAGCCCGGGCCCTGATGGTATGTCCCCTTTCTTTTATCAGAAATATTGGCATATTGTTGGTCTTGATGTCTGTACAGCTATCAGGAATTTCTTGGAAAAAGGAGAAATATGGGAGGAATCAAATTTTACTCATATCTGCCTGATCCCAAAAATTAAAAACCCAACAGAAGCAGCTCATTTTCGTCCTATAGCTCTCTGTAATGTCATTTACAGAATTTGTTCGAAAGTTTTAGCAAACAGACTCAAGAGATGGTTGCCTGAAATTATCTCTCCACTACAGAGTGCCTATGTTCCAGGTAGACTAATTTCTGATAATACATTGGTGGCTACTGAAGTGGCGCACTTCATGCATAAGCTCAGGACTCAAGAGGAAAGCTTCTTCTCACTTAAGCTTGACATCAGTAAGGCATATGATCGCCTTGAGTGGCCTTACTTACAAGCTATTCTTACAAAGTTGGGTTTTGCGTCCCAATGGATCGACATAGTGATGAAATGTGTAACTTCTGTTAGTTATGCAATCTTGGTTAATGGTGAAGCTACAGCCAAAGTACTTCCTACAAGGGGTATTAGACAAGGTGACCCACTCTCACCCTATCTTTTTATCTTATGTGCTGAGGGATTGTCTGCATTAATCTCTCAGGCGGTCCAATTTGGAAATATAAAGGGACTGAAGATGAGCCCACAAGCACCAGTTCTCCATCATCTCTTCTTTGCGGATGACAGCCTTCTCTTTGGTGCTGCTACCATGGAGGAATGTATGTCTGTCAAACACATTCTTAATACATATGAACGGGCTTCAGGACAAAAGGTAAATTTTACTAAAAGCAGTGTTGTCTTTAGTAATAATGTCCAACCTCACTTGAAGGTAACCCTTGCTTCAGTGTTGGAAGTTAAATGTGTTGATGAACATGATCGCTACCTGGGATTGCCATTGAGGGTTGGTAAGTCCAAAACTGCAAGATTTCAGTATCTTAAGGAGAAAGTTTCGAAGAAACTGGTAAGTTGGAAAGCAAAAATTCTCAGTTGTGCCGGCAAAGATATTCTCATCAAAGCTGTTGCCCAAGTTATGCCCACTTATGCCATGAACTGTTACCTCCTCCCTAAAAGCTTATGTGATGATATCCATCAACTTTGTGCTTCTTTCTTTTGGGGAGACAAGGATGACCAAAAGAAAATTCATTGGAGGAGCTGGGAGAGATTGTGTTTAACAAAGCAGGAAGGAGGAATTGGTTTCAAGAATATCTATGCCTACAATATGGCTATGCTAGCCAAACAGAGCTGGAGGTTGATTACCAGACCTAGCTCTTTAATTGCCCAGGTGTACAAAGCCAGGTACTTTCCTAACTGTTCTTTTTGGGATGCTGGTTTGGGGGATGCGCCATCATATTCTTGGAGAAGTATCCTGGAAAGCAGACCACTTCTCAAAGCAGGATCTACTTGGAGGATTGGTGACGGAACTCAGGTTAACATTTGGAAGCATCAATGGGTCCCAAATTGCCCAAGTTACTTGATTCAGAGACCGCAAGGTATTGCTTTTGAAATGGTCGCAGATTTGATTAACCCTCAAACAAGAACATGGAATCAGACCTCTGTACAAGCTTCTTTCCTGCCTCATGTAGCTGAGCAGGTTCTATGTATTCCATTGAGTCAACACACCATGCCAGACCACTTGAGTTGGAGCCCTGAAAAGAGAGGATTTTTCACGGTTAAAAGCGCTTACTGGATAGCGCGTCAACAAGTGCTAGGCAATGTCTTAGCTTCATCCTCAAACGGTGATCCGTTTAAGGAACTGTGGAAGCGCCTCTGGAAAGCTAACGTCCCTGGAAAGGTTCACATATGTGTTTGGAGGGCATGCAACAATCTACTGCCTACAAGGGAGCAACTGCTCAAAAAGGGTTATGTAGGGGACATGGGATGTCTCTTATGCAATCACAATGTGGAAACTACTGCACATATTTTTTGTGAGTGTCCTAGTGCCCGCCAGTTGCTATCAAACCAACCTTTTCTCTTGCAACACACTTTTCTGCCTAACCTGGACTTTCGAGAATGGATGCTAGAGCAATCTCTTAGTCTTAACGCTGATAAGTTTGCGAAATTGCTCATGATTATCTGGGGACTGTGGAAGAATCGTAATACCAAGTTATGGGAAGGAAGAGTGCAGTCGTCCAATGACATTCTGTTAGGATGCTTTACATGGCTGGAGGAGTTCCAAAAGGCTAGGATGTATCCTAACGTACCAGTTCACAACAATACAAAGCGATGGCAAGTTGCTGCAGTTCCTAAACTCAATGTTGATGGAGCATTTATTTCACAAGAAACATATGGTGGAACCGGAAGACTTTTACGAAGTTCAAGTGGAGTTTTTCACGCTGCCTTCACAAAGCCGGTTTTTCATGTAAACTCTGCAAAACAGGTGGAATTGTTGGCAATCAAGGAAGGCCTACAGTTCATTAAAAATCTGCAGATACAGAACGCTATTGTTGAAACTGATTGTTTAGTGGCAGTTCAAGAGATCACAGATCCAACCATGAATTTCTCGGTTACGAGCAGTCTTGTGATTGATAAAGAGAGTTGGGCTCCATGCCGGGTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0005929 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0015630 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022008 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030182 GO:0031175 GO:0031248 GO:0031461 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034708 GO:0034968 GO:0035097 GO:0036064 GO:0036211 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0044665 GO:0044782 GO:0048188 GO:0048468 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051276 GO:0051568 GO:0060271 GO:0070013 GO:0070925 GO:0071339 GO:0071704 GO:0071840 GO:0080008 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

1076

Amino Acids

123.19

Weight (kDa)

9.21

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	266 - 512	6.4e-27	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	779 - 874	3.2e-16	zinc-binding in reverse transcriptase
RVT_3	PF13456	975 - 1072	2.2e-13	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02730
fragaria_vesca	FvH4_2g23370
malus_domestica	MD03G1263200.v1.1
prunus_persica	Prupe.8G239500_v2.0.a1
pyrus_communis	pycom03g21070
rosa_chinensis	RchiOBHm_Chr6g0290821
rosa_laevigata	RLG00000012171
rosa_multiflora	Rmu_ssc0000069.1_g000002
rosa_roxburghii	Rroxscaffold_7G00176710
rosa_rugosa	Rorug06G0214900
rosa_samantha	Rh6BG333200 Rh6CG338900 Rh6DG326300
rosa_wichuraiana	Rw6G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	413
Acc36I	ACCTGC	2 cut(s)	413, 2251
AccB7I	CCANNNNNTGG	1 cut(s)	2778
AccI	GTMKAC	1 cut(s)	934
AccII	CGCG	1 cut(s)	2365
AciI	CCGC	7 cut(s)	268, 313, 354, 1277, 1349, 2156, 2614
AclWI	GGATC	7 cut(s)	45, 351, 772, 1118, 2074, 2405, 3149
AcsI	RAATTY	9 cut(s)	349, 577, 721, 757, 849, 1447, 1650, 1809, 3166
AcuI	CTGAAG	4 cut(s)	987, 1325, 1416, 1497
AdeI	CACNNNGTG	1 cut(s)	2572
AfaI	GTAC	9 cut(s)	46, 162, 227, 709, 1185, 1958, 1970, 2229, 2871
AfeI	AGCGCT	1 cut(s)	2350
AfiI	CCNNNNNNNGG	6 cut(s)	16, 83, 370, 1196, 2461, 2778
AflII	CTTAAG	2 cut(s)	1022, 1607
AhlI	ACTAGT	1 cut(s)	491
AjnI	CCWGG	7 cut(s)	928, 1554, 1950, 1964, 2037, 2455, 2667
AjuI	GAANNNNNNNTTGG	6 cut(s)	12, 44, 1794, 1826, 1845, 1877
AleI	CACNNNNGTG	1 cut(s)	2472
Alw26I	GTCTC	3 cut(s)	1782, 2146, 2558
AlwI	GGATC	7 cut(s)	45, 351, 772, 1118, 2074, 2405, 3149
Ama87I	CYCGRG	1 cut(s)	640
Aor51HI	AGCGCT	1 cut(s)	2350
AoxI	GGCC	4 cut(s)	127, 643, 1061, 3073
ApaI	GGGCCC	1 cut(s)	647
ApeKI	GCWGC	7 cut(s)	133, 310, 608, 806, 1373, 2906, 3005
ApoI	RAATTY	9 cut(s)	349, 577, 721, 757, 849, 1447, 1650, 1809, 3166
AseI	ATTAAT	1 cut(s)	1265
Asp700I	GAANNNNTTC	2 cut(s)	373, 853
AspLEI	GCGC	6 cut(s)	499, 976, 2014, 2351, 2365, 2436
AspS9I	GGNCC	5 cut(s)	315, 643, 644, 1279, 2122
AsuC2I	CCSGG	3 cut(s)	641, 642, 3221
AsuHPI	GGTGA	5 cut(s)	1178, 1215, 1223, 2096, 2420
AsuII	TTCGAA	2 cut(s)	857, 1622
AsuNHI	GCTAGC	1 cut(s)	1900
AvaI	CYCGRG	1 cut(s)	640
AvaII	GGWCC	3 cut(s)	315, 1279, 2122
BaeGI	GKGCMC	2 cut(s)	647, 2614
BanII	GRGCYC	4 cut(s)	647, 1316, 2318, 3214
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
BbsI	GAAGAC	1 cut(s)	2977
BbvCI	CCTCAGC	1 cut(s)	1248
BbvI	GCAGC	7 cut(s)	145, 322, 595, 818, 1360, 2893, 2992
BceAI	ACGGC	2 cut(s)	138, 208
BciT130I	CCWGG	7 cut(s)	930, 1556, 1952, 1966, 2039, 2457, 2669
BciVI	GTATCC	2 cut(s)	2045, 2871
BcnI	CCSGG	3 cut(s)	641, 642, 3221
BcoDI	GTCTC	3 cut(s)	1782, 2146, 2558
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	7 cut(s)	492, 1901, 1935, 2378, 2607, 2690, 2853
BfmI	CTRYAG	6 cut(s)	822, 911, 1173, 2907, 3077, 3095
BfoI	RGCGCY	2 cut(s)	2352, 2437
BfrI	CTTAAG	2 cut(s)	1022, 1607
BfuAI	ACCTGC	2 cut(s)	413, 2251
BfuI	GTATCC	2 cut(s)	2045, 2871
BisI	GCNGC	8 cut(s)	134, 269, 311, 609, 807, 1374, 2907, 3006
BlpI	GCTNAGC	1 cut(s)	2256
BlsI	GCNGC	8 cut(s)	135, 270, 312, 610, 808, 1375, 2908, 3007
BmcAI	AGTACT	1 cut(s)	1185
Bme18I	GGWCC	3 cut(s)	315, 1279, 2122
BmeT110I	CYCGRG	1 cut(s)	640
BmgT120I	GGNCC	5 cut(s)	315, 643, 644, 1279, 2122
BmiI	GGNNCC	8 cut(s)	8, 222, 645, 2123, 2124, 2315, 2965, 3213
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	6 cut(s)	634, 1984, 1999, 2122, 2676, 2810
BmtI	GCTAGC	1 cut(s)	1904
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	2977
BplI	GAGNNNNNCTC	4 cut(s)	212, 244, 3196, 3228
BpmI	CTGGAG	3 cut(s)	402, 1936, 2855
Bpu10I	CCTNAGC	2 cut(s)	992, 1248
Bpu1102I	GCTNAGC	1 cut(s)	2256
Bpu14I	TTCGAA	2 cut(s)	857, 1622
BpuEI	CTTGAG	4 cut(s)	863, 984, 1076, 2326
BpuMI	CCSGG	3 cut(s)	641, 642, 3221
BsaBI	GATNNNNATC	2 cut(s)	342, 1758
BsaI	GGTCTC	1 cut(s)	2146
BsaJI	CCNNGG	5 cut(s)	640, 1380, 1555, 1950, 2455
BsaWI	WCCGGW	1 cut(s)	2966
BsaXI	ACNNNNNCTCC	6 cut(s)	1314, 1344, 1820, 1850, 2068, 2098
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 83, 370, 1196, 2461, 2778
Bse118I	RCCGGY	2 cut(s)	1664, 3019
Bse1I	ACTGG	6 cut(s)	71, 1325, 1635, 2360, 2617, 2873
Bse3DI	GCAATG	1 cut(s)	2389
Bse8I	GATNNNNATC	2 cut(s)	342, 1758
BseBI	CCWGG	7 cut(s)	930, 1556, 1952, 1966, 2039, 2457, 2669
BseDI	CCNNGG	5 cut(s)	640, 1380, 1555, 1950, 2455
BseJI	GATNNNNATC	2 cut(s)	342, 1758
BseLI	CCNNNNNNNGG	6 cut(s)	16, 83, 370, 1196, 2461, 2778
BseMI	GCAATG	1 cut(s)	2389
BseMII	CTCAG	8 cut(s)	168, 225, 1006, 1239, 1286, 1669, 2108, 2247
BseNI	ACTGG	6 cut(s)	71, 1325, 1635, 2360, 2617, 2873
BseRI	GAGGAG	3 cut(s)	1721, 1834, 2852
BseSI	GKGCMC	2 cut(s)	647, 2614
BseXI	GCAGC	7 cut(s)	145, 322, 595, 818, 1360, 2893, 2992
BseYI	CCCAGC	1 cut(s)	1824
BsgI	GTGCAG	3 cut(s)	594, 2568, 2813
Bsh1236I	CGCG	1 cut(s)	2365
BshFI	GGCC	4 cut(s)	129, 645, 1063, 3075
BsiHKCI	CYCGRG	1 cut(s)	640
BsiSI	CCGG	5 cut(s)	641, 1665, 2967, 3020, 3220
BslFI	GGGAC	7 cut(s)	643, 1087, 1314, 2108, 2438, 2555, 2763
BslI	CCNNNNNNNGG	6 cut(s)	16, 83, 370, 1196, 2461, 2778
BsmAI	GTCTC	3 cut(s)	1782, 2146, 2558
BsmFI	GGGAC	7 cut(s)	643, 1087, 1314, 2108, 2438, 2555, 2763
BsnI	GGCC	4 cut(s)	129, 645, 1063, 3075
Bso31I	GGTCTC	1 cut(s)	2146
BsoBI	CYCGRG	1 cut(s)	640
Bsp119I	TTCGAA	2 cut(s)	857, 1622
Bsp120I	GGGCCC	1 cut(s)	643
Bsp1286I	GDGCHC	5 cut(s)	647, 1316, 2318, 2614, 3214
Bsp1407I	TGTACA	4 cut(s)	160, 707, 1956, 2227
Bsp1720I	GCTNAGC	1 cut(s)	2256
Bsp19I	CCATGG	1 cut(s)	1380
BspACI	CCGC	7 cut(s)	268, 313, 354, 1277, 1349, 2156, 2614
BspANI	GGCC	4 cut(s)	129, 645, 1063, 3075
BspCNI	CTCAG	8 cut(s)	169, 226, 1005, 1240, 1285, 1668, 2107, 2248
BspFNI	CGCG	1 cut(s)	2365
BspHI	TCATGA	1 cut(s)	2736
BspLI	GGNNCC	8 cut(s)	8, 222, 645, 2123, 2124, 2315, 2965, 3213
BspMAI	CTGCAG	2 cut(s)	2911, 3099
BspMI	ACCTGC	2 cut(s)	413, 2251
BspOI	GCTAGC	1 cut(s)	1904
BspPI	GGATC	7 cut(s)	45, 351, 772, 1118, 2074, 2405, 3149
BspQI	GCTCTTC	1 cut(s)	240
BspT104I	TTCGAA	2 cut(s)	857, 1622
BspTI	CTTAAG	2 cut(s)	1022, 1607
BspTNI	GGTCTC	1 cut(s)	2146
BsrDI	GCAATG	1 cut(s)	2389
BsrFI	RCCGGY	2 cut(s)	1664, 3019
BsrGI	TGTACA	4 cut(s)	160, 707, 1956, 2227
BsrI	ACTGG	6 cut(s)	71, 1325, 1635, 2360, 2617, 2873
BssAI	RCCGGY	2 cut(s)	1664, 3019
BssECI	CCNNGG	5 cut(s)	640, 1380, 1555, 1950, 2455
BssT1I	CCWWGG	1 cut(s)	1380
Bst2UI	CCWGG	7 cut(s)	930, 1556, 1952, 1966, 2039, 2457, 2669
Bst4CI	ACNGT	7 cut(s)	1724, 1982, 2341, 2408, 2427, 2754, 3081
Bst6I	CTCTTC	4 cut(s)	240, 591, 1346, 2782
BstAFI	CTTAAG	2 cut(s)	1022, 1607
BstAPI	GCANNNNNTGC	1 cut(s)	982
BstAUI	TGTACA	4 cut(s)	160, 707, 1956, 2227
BstBI	TTCGAA	2 cut(s)	857, 1622
BstC8I	GCNNGC	7 cut(s)	127, 131, 257, 1666, 1902, 2488, 2614
BstDSI	CCRYGG	1 cut(s)	1380
BstEII	GGTNACC	3 cut(s)	86, 1211, 1501
BstFNI	CGCG	1 cut(s)	2365
BstH2I	RGCGCY	2 cut(s)	2352, 2437
BstHHI	GCGC	6 cut(s)	499, 976, 2014, 2351, 2365, 2436
BstMAI	GTCTC	3 cut(s)	1782, 2146, 2558
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 256, 265, 982, 1901
BstNI	CCWGG	7 cut(s)	930, 1556, 1952, 1966, 2039, 2457, 2669
BstNSI	RCATGY	1 cut(s)	2490
BstPI	GGTNACC	3 cut(s)	86, 1211, 1501
BstSFI	CTRYAG	6 cut(s)	822, 911, 1173, 2907, 3077, 3095
BstSLI	GKGCMC	2 cut(s)	647, 2614
BstUI	CGCG	1 cut(s)	2365
BstV1I	GCAGC	7 cut(s)	145, 322, 595, 818, 1360, 2893, 2992
BstV2I	GAAGAC	1 cut(s)	2977
BstX2I	RGATCY	2 cut(s)	2066, 3154
BstYI	RGATCY	2 cut(s)	2066, 3154
BsuI	GTATCC	2 cut(s)	2045, 2871
BsuRI	GGCC	4 cut(s)	129, 645, 1063, 3075
BtgI	CCRYGG	1 cut(s)	1380
BtgZI	GCGATG	1 cut(s)	2908
BtsI	GCAGTG	1 cut(s)	1468
BtsIMutI	CAGTG	2 cut(s)	1468, 1521
BveI	ACCTGC	2 cut(s)	413, 2251
Cac8I	GCNNGC	7 cut(s)	127, 131, 257, 1666, 1902, 2488, 2614
CciI	TCATGA	1 cut(s)	2736
CfoI	GCGC	6 cut(s)	499, 976, 2014, 2351, 2365, 2436
Cfr10I	RCCGGY	2 cut(s)	1664, 3019
Cfr13I	GGNCC	5 cut(s)	315, 643, 644, 1279, 2122
Cfr9I	CCCGGG	1 cut(s)	640
CseI	GACGC	2 cut(s)	1089, 2354
Csp6I	GTAC	9 cut(s)	45, 161, 226, 708, 1184, 1957, 1969, 2228, 2870
CspCI	CAANNNNNGTGG	4 cut(s)	2291, 2326, 3030, 3065
CviQI	GTAC	9 cut(s)	45, 161, 226, 708, 1184, 1957, 1969, 2228, 2870
DraIII	CACNNNGTG	1 cut(s)	2572
Eam1104I	CTCTTC	4 cut(s)	240, 591, 1346, 2782
EarI	CTCTTC	4 cut(s)	240, 591, 1346, 2782
Eco130I	CCWWGG	1 cut(s)	1380
Eco147I	AGGCCT	1 cut(s)	3075
Eco24I	GRGCYC	4 cut(s)	647, 1316, 2318, 3214
Eco31I	GGTCTC	1 cut(s)	2146
Eco32I	GATATC	1 cut(s)	1756
Eco47I	GGWCC	3 cut(s)	315, 1279, 2122
Eco47III	AGCGCT	1 cut(s)	2350
Eco57I	CTGAAG	4 cut(s)	987, 1325, 1416, 1497
Eco88I	CYCGRG	1 cut(s)	640
Eco91I	GGTNACC	3 cut(s)	86, 1211, 1501
EcoO109I	RGGNCCY	2 cut(s)	644, 2122
EcoO65I	GGTNACC	3 cut(s)	86, 1211, 1501
EcoRII	CCWGG	7 cut(s)	928, 1554, 1950, 1964, 2037, 2455, 2667
EcoRV	GATATC	1 cut(s)	1756
EcoT14I	CCWWGG	1 cut(s)	1380
EcoT22I	ATGCAT	2 cut(s)	627, 987
EcoT38I	GRGCYC	4 cut(s)	647, 1316, 2318, 3214
ErhI	CCWWGG	1 cut(s)	1380
FalI	AAGNNNNNCTT	4 cut(s)	186, 218, 1065, 1097
FaqI	GGGAC	7 cut(s)	643, 1087, 1314, 2108, 2438, 2555, 2763
FauI	CCCGC	1 cut(s)	2621
FauNDI	CATATG	6 cut(s)	326, 459, 1045, 1420, 2471, 2956
FblI	GTMKAC	1 cut(s)	934
Fnu4HI	GCNGC	8 cut(s)	134, 269, 311, 609, 807, 1374, 2907, 3006
FriOI	GRGCYC	4 cut(s)	647, 1316, 2318, 3214
Fsp4HI	GCNGC	8 cut(s)	134, 269, 311, 609, 807, 1374, 2907, 3006
FspBI	CTAG	7 cut(s)	492, 1901, 1935, 2378, 2607, 2690, 2853
GlaI	GCGC	6 cut(s)	498, 975, 2013, 2350, 2364, 2435
GluI	GCNGC	8 cut(s)	134, 269, 311, 609, 807, 1374, 2907, 3006
GsaI	CCCAGC	1 cut(s)	1828
GsuI	CTGGAG	3 cut(s)	402, 1936, 2855
HaeII	RGCGCY	2 cut(s)	2352, 2437
HaeIII	GGCC	4 cut(s)	129, 645, 1063, 3075
HapII	CCGG	5 cut(s)	641, 1665, 2967, 3020, 3220
HgaI	GACGC	2 cut(s)	1089, 2354
HhaI	GCGC	6 cut(s)	499, 976, 2014, 2351, 2365, 2436
Hin6I	GCGC	6 cut(s)	497, 974, 2012, 2349, 2363, 2434
HinP1I	GCGC	6 cut(s)	497, 974, 2012, 2349, 2363, 2434
HincII	GTYRAC	3 cut(s)	2101, 2285, 2369
HindII	GTYRAC	3 cut(s)	2101, 2285, 2369
HindIII	AAGCTT	4 cut(s)	1009, 1025, 1741, 2232
HinfI	GANTC	8 cut(s)	415, 752, 876, 997, 2146, 2215, 2281, 2761
HpaI	GTTAAC	1 cut(s)	2101
HpaII	CCGG	5 cut(s)	641, 1665, 2967, 3020, 3220
HphI	GGTGA	5 cut(s)	1178, 1215, 1223, 2096, 2420
Hpy166II	GTNNAC	8 cut(s)	935, 1957, 2101, 2285, 2369, 2467, 2878, 3034
Hpy188I	TCNGA	8 cut(s)	60, 235, 592, 605, 675, 946, 2151, 2220
Hpy8I	GTNNAC	8 cut(s)	935, 1957, 2101, 2285, 2369, 2467, 2878, 3034
HpyAV	CCTTC	8 cut(s)	178, 211, 1370, 1492, 1847, 2777, 3019, 3065
HpyCH4III	ACNGT	7 cut(s)	1724, 1982, 2341, 2408, 2427, 2754, 3081
HpyCH4IV	ACGT	2 cut(s)	2451, 2868
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 256, 265, 982, 1901
HpySE526I	ACGT	2 cut(s)	2451, 2868
HspAI	GCGC	6 cut(s)	497, 974, 2012, 2349, 2363, 2434
KflI	GGGWCCC	1 cut(s)	2122
KroI	GCCGGC	1 cut(s)	1664
KroNI	GCCGGC	1 cut(s)	1666
KspAI	GTTAAC	1 cut(s)	2101
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	6 cut(s)	220, 1821, 2313, 2512, 2933, 3217
Lsp1109I	GCAGC	7 cut(s)	145, 322, 595, 818, 1360, 2893, 2992
LweI	GCATC	6 cut(s)	634, 1984, 1999, 2122, 2676, 2810
MaeI	CTAG	7 cut(s)	492, 1901, 1935, 2378, 2607, 2690, 2853
MaeII	ACGT	2 cut(s)	2451, 2868
MflI	RGATCY	2 cut(s)	2066, 3154
MhlI	GDGCHC	5 cut(s)	647, 1316, 2318, 2614, 3214
MlyI	GAGTC	4 cut(s)	409, 870, 991, 2290
MmeI	TCCRAC	5 cut(s)	1500, 1510, 1619, 2291, 3182
Mph1103I	ATGCAT	2 cut(s)	627, 987
MroNI	GCCGGC	1 cut(s)	1664
MroXI	GAANNNNTTC	2 cut(s)	373, 853
MslI	CAYNNNNRTG	2 cut(s)	1121, 2472
MspA1I	CMGCKG	1 cut(s)	313
MspCI	CTTAAG	2 cut(s)	1022, 1607
MspI	CCGG	5 cut(s)	641, 1665, 2967, 3020, 3220
MvaI	CCWGG	7 cut(s)	930, 1556, 1952, 1966, 2039, 2457, 2669
MvnI	CGCG	1 cut(s)	2365
MwoI	GCNNNNNNNGC	5 cut(s)	122, 256, 265, 982, 1901
NaeI	GCCGGC	1 cut(s)	1666
NciI	CCSGG	3 cut(s)	641, 642, 3221
NcoI	CCATGG	1 cut(s)	1380
NdeI	CATATG	6 cut(s)	326, 459, 1045, 1420, 2471, 2956
NgoMIV	GCCGGC	1 cut(s)	1664
NheI	GCTAGC	1 cut(s)	1900
NlaIV	GGNNCC	8 cut(s)	8, 222, 645, 2123, 2124, 2315, 2965, 3213
NmuCI	GTSAC	3 cut(s)	550, 1211, 2084
NsiI	ATGCAT	2 cut(s)	627, 987
NspI	RCATGY	1 cut(s)	2490
NspV	TTCGAA	2 cut(s)	857, 1622
OliI	CACNNNNGTG	1 cut(s)	2472
PaeI	GCATGC	1 cut(s)	2490
PagI	TCATGA	1 cut(s)	2736
PaqCI	CACCTGC	1 cut(s)	413
PceI	AGGCCT	1 cut(s)	3075
PciSI	GCTCTTC	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	1666
PdmI	GAANNNNTTC	2 cut(s)	373, 853
PfeI	GAWTC	4 cut(s)	752, 2146, 2215, 2761
PflMI	CCANNNNNTGG	1 cut(s)	2778
PfoI	TCCNGGA	1 cut(s)	2037
PkrI	GCNGC	8 cut(s)	135, 270, 312, 610, 808, 1375, 2908, 3007
PleI	GAGTC	4 cut(s)	409, 870, 991, 2289
PpsI	GAGTC	4 cut(s)	409, 870, 991, 2289
PpuMI	RGGWCCY	1 cut(s)	2122
PshBI	ATTAAT	1 cut(s)	1265
Psp5II	RGGWCCY	1 cut(s)	2122
Psp6I	CCWGG	7 cut(s)	928, 1554, 1950, 1964, 2037, 2455, 2667
PspEI	GGTNACC	3 cut(s)	86, 1211, 1501
PspFI	CCCAGC	1 cut(s)	1824
PspGI	CCWGG	7 cut(s)	928, 1554, 1950, 1964, 2037, 2455, 2667
PspN4I	GGNNCC	8 cut(s)	8, 222, 645, 2123, 2124, 2315, 2965, 3213
PspOMI	GGGCCC	1 cut(s)	643
PspPI	GGNCC	5 cut(s)	315, 643, 644, 1279, 2122
PspPPI	RGGWCCY	1 cut(s)	2122
PstI	CTGCAG	2 cut(s)	2911, 3099
PsuI	RGATCY	2 cut(s)	2066, 3154
RsaI	GTAC	9 cut(s)	46, 162, 227, 709, 1185, 1958, 1970, 2229, 2871
RsaNI	GTAC	9 cut(s)	45, 161, 226, 708, 1184, 1957, 1969, 2228, 2870
RseI	CAYNNNNRTG	2 cut(s)	1121, 2472
SapI	GCTCTTC	1 cut(s)	240
SatI	GCNGC	8 cut(s)	134, 269, 311, 609, 807, 1374, 2907, 3006
Sau96I	GGNCC	5 cut(s)	315, 643, 644, 1279, 2122
ScaI	AGTACT	1 cut(s)	1185
SchI	GAGTC	4 cut(s)	409, 870, 991, 2290
SduI	GDGCHC	5 cut(s)	647, 1316, 2318, 2614, 3214
SfaNI	GCATC	6 cut(s)	634, 1984, 1999, 2122, 2676, 2810
SfcI	CTRYAG	6 cut(s)	822, 911, 1173, 2907, 3077, 3095
SfuI	TTCGAA	2 cut(s)	857, 1622
SinI	GGWCC	3 cut(s)	315, 1279, 2122
SmaI	CCCGGG	1 cut(s)	642
SmiMI	CAYNNNNRTG	2 cut(s)	1121, 2472
SmlI	CTYRAG	6 cut(s)	878, 999, 1022, 1055, 1607, 2305
SmoI	CTYRAG	6 cut(s)	878, 999, 1022, 1055, 1607, 2305
SpeI	ACTAGT	1 cut(s)	491
SphI	GCATGC	1 cut(s)	2490
SrfI	GCCCGGGC	1 cut(s)	642
SseBI	AGGCCT	1 cut(s)	3075
SsiI	CCGC	7 cut(s)	268, 313, 354, 1277, 1349, 2156, 2614
SspI	AATATT	2 cut(s)	473, 680
SspMI	CTAG	7 cut(s)	492, 1901, 1935, 2378, 2607, 2690, 2853
StuI	AGGCCT	1 cut(s)	3075
StyI	CCWWGG	1 cut(s)	1380
TaaI	ACNGT	7 cut(s)	1724, 1982, 2341, 2408, 2427, 2754, 3081
TaiI	ACGT	2 cut(s)	2454, 2871
TaqI	TCGA	7 cut(s)	346, 367, 454, 857, 1113, 1622, 2677
TatI	WGTACW	5 cut(s)	160, 707, 1183, 1956, 2227
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	4 cut(s)	752, 2146, 2215, 2761
TscAI	CASTG	2 cut(s)	1468, 1521
TseFI	GTSAC	3 cut(s)	550, 1211, 2084
TseI	GCWGC	7 cut(s)	133, 310, 608, 806, 1373, 2906, 3005
Tsp45I	GTSAC	3 cut(s)	550, 1211, 2084
TspGWI	ACGGA	3 cut(s)	62, 2103, 2403
TspMI	CCCGGG	1 cut(s)	640
TspRI	CASTG	2 cut(s)	1468, 1521
Van91I	CCANNNNNTGG	1 cut(s)	2778
Vha464I	CTTAAG	2 cut(s)	1022, 1607
VpaK11BI	GGWCC	3 cut(s)	315, 1279, 2122
VspI	ATTAAT	1 cut(s)	1265
XapI	RAATTY	9 cut(s)	349, 577, 721, 757, 849, 1447, 1650, 1809, 3166
XceI	RCATGY	1 cut(s)	2490
XcmI	CCANNNNNNNNNTGG	2 cut(s)	426, 2022
XmaI	CCCGGG	1 cut(s)	640
XmiI	GTMKAC	1 cut(s)	934
XmnI	GAANNNNTTC	2 cut(s)	373, 853
XspI	CTAG	7 cut(s)	492, 1901, 1935, 2378, 2607, 2690, 2853
ZrmI	AGTACT	1 cut(s)	1185
Zsp2I	ATGCAT	2 cut(s)	627, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.