Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013837

Physical Location & Seq

Genomic Coordinates Reverse (-)

1221017 .. 1223617

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGGAAATAAACAAGTTTCGTGCTCTTTCGCGGCGAGCTCAGCAGCTACATTACACATCCTTGAATGGACTTAAACGAAGATGCAACAACGCACACGGTGCAGCTAATTTTCACTCGTTGAAGAGAGCTACACAAACCCAAATCCAGAAATCGCAGACCAAACCTCTCCTTAAATGTGGAGACTCGGATATAAAAGAGTGGAACGTTGCTATAAGCAGCTACATGCGTACTGGAAGATGCAACGAAGCGCTTCGTGTCTTCAAACGCATGCCTAGGTGGAGTTCCGTTTCTTATAACGGTATGATTTCTGGTTATTTGAGAAACGGTGAGTTTGAACTCGCCCGGAAGTTGTTCGATGAAATGCCTGAACGAGATTTAGTTTCCTGGAATGTGATGATTAAAGGGTATGTACGGAACAGGAATCTTGGGAAAGCGAGGGAATTGTTTGAGATAATGCCTGAGAGAGATGTTTGTTCGTGGAATACCATGTTGTCGGGTTACGCTCAGAATGGTTGTGTTGATGATGCAAGGAGTGTTTTTGATCGAATGCCTGAGAAGAACGATGTATCGTGGAATGCATTGCTCTCTGCTTATGTTCAGAATAGTAAGATGGAGGAGGCTTGTATGTTGTTTAAGTCAAGAGAGAATTGGGCGTTGGTTTCGTGGAACTGCTTGCTTGGTGGGTTTGTTAAGAAGAAAAAGATTGTTGAGGCAAGGCAGTTTTTTGATAGTATGAATGTGAGGGATGTGGTCTCATGGAATACGATCATCACTGGTTATGCACAGAGCGGGAAAATCGATGAGGCGCGGCAGCTATTTGATGAGTCTCCTGTTCAAGATGTCTTTACATGGACAGCAATGGTGTCAGGATATATACAAAACCGGATGGTGGAAGAAGCGAGAGAATTATTCGACAAAATGCCAGAGAGAAACGAAGTGTCATGGAATGCCATGCTTGCAGGATATGTGCAGGGCGAGAGAATGGAGATGGCAAAGGAATTGTTTGATGTTATGCCTTGTAGAAATGTTAGTACATGGAACACGATGATAACTGGATATGCTCAGTGTGGGAAAATTTCTGAAGCTAAGAACCTTTTTGATAAAATGCCAAAGAGAGATCCGGTCTCTTGGGCAGCTATGATTGCAGGGTATTCGCAAAGCGGACACAGCTTTGAAGCTCTTCGTTTGTTTGTACAAATGGAGAGGGAGGGAGGTAGATTGAATCGGTCTTCGTTTTCATCTGCTCTAAGCACATGTGCAGACGTTGTTGCTCTCGAGCTCGGGAAGCAATTGCATGGACGATTAGTTAAAGGTGGGTATGAGACTGGGTGCTTTGTTGGGAATGCGCTTTTGTTGATGTATTGCAAATGTGGAAGCATAGAAGAAGCTAATGACTTGTTTAAGGAGATGGCTGGGAAGGACATTGTCTCTTGGAACACAATGATTGCAGGTTACTCAAGGCACGGGTTCGGAGAAGTGGCTTTAAGGTTCTTCGAGTCGATGAAGAGAGAAGGACTGAAGCCAGATGATGCTACCATGGTTGCGGTATTATCTGCATGCAGTCACACAGGACTTGTTGACAAAGGCAGGCAATATTTCTATACGATGACTCAAGACTATGGCGTAATGCCTAACTCACAGCACTATGCTTGCATGGTTGATCTTCTTGGTCGAGCTGGGCTTCTAGAAGATGCTCACAATCTAATGAAGAACATGCCCTTTGAGCCAGACGCTGCAATTTGGGGAACTTTACTTGGTGCAAGCAGAGTTCATGGAAACACAGAGCTAGCCGAAACAGCTGCAGATAAGATATTTGCAATGGAGCCTGAAAATTCCGGTATGTATGTTCTTCTCTCTAATCTATACGCTTCTTCGGGTCGATGGGGAGATGTTGGTAAACTACGAGTGAGAATGCGGGATAAAGGGGTGAAGAAAGTTCCAGGGTACAGTTGGATTGAAATTCAGAACAAGACTCATACTTTCTCGGTTGGGGATGAGTTTCATCCTGAGAAAGACGAGATCTTTGCATTTTTGGAGGAGCTGGATTTGAGAATGAAGAAAGCAGGGTATGTTTCAAAGACGAGTGTGGTTCTTCATGATGTGGAGGAAGAAGAGAAGGAGCGTATGGTTCGGTACCATAGCGAGAGACTGGCTGTAGCTTATGGGATAATGCGTGTGTCTTCAGGGAGACCGATCCGTGTGATAAAGAATCTGCGTGTATGTGAGGATTGTCACAACGCCATCAAGTATATGGCCAGAATCACAGGGAGACTGATTATCTTGAGGGATAATAACAGGTTTCACCATTTTAAGGATGGTTCATGTTCTTGTGGAGACTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

781

Amino Acids

89.04

Weight (kDa)

8.65

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	95 - 125	1.8e-07	PPR repeat family
PPR	PF01535	96 - 125	2.4e-08	PPR repeat
PPR_2	PF13041	125 - 156	6.9e-06	PPR repeat family
PPR	PF01535	127 - 156	3.4e-07	PPR repeat
PPR_1	PF12854	155 - 183	7.2e-06	PPR repeat
PPR_2	PF13041	155 - 187	1.7e-06	PPR repeat family
PPR	PF01535	159 - 187	1.4e-08	PPR repeat
PPR_2	PF13041	248 - 275	8.7e-07	PPR repeat family
PPR_1	PF12854	248 - 275	3.3e-07	PPR repeat
PPR	PF01535	251 - 275	1.8e-06	PPR repeat
PPR_2	PF13041	280 - 311	2.4e-06	PPR repeat family
PPR	PF01535	282 - 311	3.7e-08	PPR repeat
PPR_2	PF13041	311 - 343	9.8e-06	PPR repeat family
PPR_2	PF13041	341 - 372	4.1e-08	PPR repeat family
PPR_1	PF12854	341 - 369	1.2e-07	PPR repeat
PPR	PF01535	344 - 372	1.1e-08	PPR repeat
PPR_2	PF13041	473 - 521	1.8e-12	PPR repeat family
PPR	PF01535	476 - 506	2.2e-08	PPR repeat
E_motif	PF20431	591 - 653	1.6e-21	E motif
DYW_deaminase	PF14432	689 - 781	1.6e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02750
fragaria_vesca	FvH4_5g17170 FvH4_5g17170 FvH4_5g17170
malus_domestica	MD06G1230200.v1.1
prunus_persica	Prupe.5G231300_v2.0.a1
pyrus_communis	pycom06g20140
rosa_chinensis	RchiOBHm_Chr7g0178631
rosa_laevigata	RLG00000005428
rosa_multiflora	Rmu_sc0002320.1_g000006
rosa_rugosa	Rorug06G0418500 Rorug06G0418600 Rorug07G0253600
rosa_samantha	Rh7AG017300 Rh7BG016900 Rh7DG017500
rosa_wichuraiana	Rw7G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
Acc36I	ACCTGC	1 cut(s)	1439
Acc65I	GGTACC	1 cut(s)	2133
AccB1I	GGYRCC	1 cut(s)	2133
AccBSI	CCGCTC	1 cut(s)	789
AccII	CGCG	2 cut(s)	31, 808
AciI	CCGC	6 cut(s)	31, 789, 808, 1161, 1544, 1915
AclI	AACGTT	1 cut(s)	204
AclWI	GGATC	2 cut(s)	1112, 2188
AcoI	YGGCCR	1 cut(s)	2253
AcsI	RAATTY	3 cut(s)	1074, 1831, 1959
AcuI	CTGAAG	3 cut(s)	1101, 1538, 2166
AdeI	CACNNNGTG	1 cut(s)	98
AfaI	GTAC	6 cut(s)	229, 411, 1033, 1194, 1946, 2135
AfeI	AGCGCT	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	889, 2311
AflIII	ACRYGT	1 cut(s)	1253
AgsI	TTSAA	9 cut(s)	64, 121, 262, 335, 836, 1175, 1222, 1958, 2076
AjnI	CCWGG	2 cut(s)	383, 1939
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
Alw21I	GWGCWC	3 cut(s)	25, 40, 1281
AlwI	GGATC	2 cut(s)	1112, 2188
AlwNI	CAGNNNCTG	1 cut(s)	1733
Ama87I	CYCGRG	2 cut(s)	1274, 1280
Aor51HI	AGCGCT	1 cut(s)	249
AoxI	GGCC	1 cut(s)	2253
ApeKI	GCWGC	7 cut(s)	43, 101, 216, 811, 1133, 1733, 1799
ApoI	RAATTY	3 cut(s)	1074, 1831, 1959
ArsI	GACNNNNNNTTYG	2 cut(s)	2006, 2038
Asp700I	GAANNNNTTC	3 cut(s)	249, 350, 1179
Asp718I	GGTACC	1 cut(s)	2133
AspA2I	CCTAGG	1 cut(s)	272
AspLEI	GCGC	3 cut(s)	250, 808, 1348
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	3 cut(s)	338, 1939, 2294
AsuNHI	GCTAGC	1 cut(s)	1786
AvaI	CYCGRG	2 cut(s)	1274, 1280
AvrII	CCTAGG	1 cut(s)	272
BalI	TGGCCA	1 cut(s)	2255
BanI	GGYRCC	1 cut(s)	2133
BanII	GRGCYC	2 cut(s)	40, 1281
BbsI	GAAGAC	3 cut(s)	250, 1221, 2172
Bbv12I	GWGCWC	3 cut(s)	25, 40, 1281
BbvI	GCAGC	7 cut(s)	55, 113, 228, 823, 1145, 1720, 1786
BccI	CCATC	7 cut(s)	604, 880, 982, 1402, 1875, 2249, 2309
BcgI	CGANNNNNNTGC	6 cut(s)	1134, 1168, 1781, 1815, 2006, 2040
BciT130I	CCWGG	2 cut(s)	385, 1941
BcnI	CCSGG	1 cut(s)	343
BfaI	CTAG	3 cut(s)	273, 1685, 1787
BfmI	CTRYAG	2 cut(s)	1800, 2154
BfoI	RGCGCY	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	1439
BglII	AGATCT	1 cut(s)	2019
BisI	GCNGC	9 cut(s)	32, 44, 102, 217, 809, 812, 1134, 1734, 1800
BlnI	CCTAGG	1 cut(s)	272
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	9 cut(s)	33, 45, 103, 218, 810, 813, 1135, 1735, 1801
Bme1390I	CCNGG	3 cut(s)	343, 385, 1941
BmeT110I	CYCGRG	2 cut(s)	1274, 1280
BmiI	GGNNCC	2 cut(s)	1824, 2135
BmrFI	CCNGG	3 cut(s)	343, 385, 1941
BmrI	ACTGGG	1 cut(s)	1335
BmsI	GCATC	5 cut(s)	71, 227, 514, 1519, 1681
BmtI	GCTAGC	1 cut(s)	1790
BmuI	ACTGGG	1 cut(s)	1335
BpiI	GAAGAC	3 cut(s)	250, 1221, 2172
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	3 cut(s)	1441, 1596, 2302
BpuMI	CCSGG	1 cut(s)	343
Bsa29I	ATCGAT	1 cut(s)	798
BsaI	GGTCTC	3 cut(s)	757, 1129, 2182
BsaJI	CCNNGG	3 cut(s)	272, 1536, 1940
BsaWI	WCCGGW	3 cut(s)	882, 1120, 1835
Bsc4I	CCNNNNNNNGG	2 cut(s)	889, 2311
Bse1I	ACTGG	6 cut(s)	235, 778, 1057, 1330, 2154, 2345
Bse3DI	GCAATG	3 cut(s)	578, 864, 1824
BseBI	CCWGG	2 cut(s)	385, 1941
BseCI	ATCGAT	1 cut(s)	798
BseDI	CCNNGG	3 cut(s)	272, 1536, 1940
BseGI	GGATG	6 cut(s)	56, 751, 891, 1999, 2002, 2320
BseLI	CCNNNNNNNGG	2 cut(s)	889, 2311
BseMI	GCAATG	3 cut(s)	578, 864, 1824
BseMII	CTCAG	6 cut(s)	53, 450, 518, 543, 1076, 1998
BseNI	ACTGG	6 cut(s)	235, 778, 1057, 1330, 2154, 2345
BseRI	GAGGAG	2 cut(s)	629, 2051
BseXI	GCAGC	7 cut(s)	55, 113, 228, 823, 1145, 1720, 1786
BseYI	CCCAGC	2 cut(s)	1412, 1676
BsgI	GTGCAG	3 cut(s)	120, 989, 1278
Bsh1236I	CGCG	2 cut(s)	31, 808
BshFI	GGCC	1 cut(s)	2255
BshNI	GGYRCC	1 cut(s)	2133
BshVI	ATCGAT	1 cut(s)	798
BsiHKAI	GWGCWC	3 cut(s)	25, 40, 1281
BsiHKCI	CYCGRG	2 cut(s)	1274, 1280
BsiSI	CCGG	4 cut(s)	343, 883, 1121, 1836
BslI	CCNNNNNNNGG	2 cut(s)	889, 2311
BsmI	GAATGC	5 cut(s)	552, 580, 952, 1348, 1917
BsnI	GGCC	1 cut(s)	2255
Bso31I	GGTCTC	3 cut(s)	757, 1129, 2182
BsoBI	CYCGRG	2 cut(s)	1274, 1280
Bsp1286I	GDGCHC	3 cut(s)	25, 40, 1281
Bsp1407I	TGTACA	1 cut(s)	1192
Bsp143I	GATC	6 cut(s)	541, 765, 1117, 1660, 2019, 2193
Bsp1720I	GCTNAGC	1 cut(s)	39
Bsp19I	CCATGG	1 cut(s)	1536
BspACI	CCGC	6 cut(s)	31, 789, 808, 1161, 1544, 1915
BspANI	GGCC	1 cut(s)	2255
BspCNI	CTCAG	6 cut(s)	52, 451, 517, 544, 1075, 1999
BspDI	ATCGAT	1 cut(s)	798
BspFNI	CGCG	2 cut(s)	31, 808
BspHI	TCATGA	1 cut(s)	2095
BspLI	GGNNCC	2 cut(s)	1824, 2135
BspMAI	CTGCAG	1 cut(s)	1804
BspMI	ACCTGC	1 cut(s)	1439
BspOI	GCTAGC	1 cut(s)	1790
BspPI	GGATC	2 cut(s)	1112, 2188
BspQI	GCTCTTC	1 cut(s)	1185
BspT107I	GGYRCC	1 cut(s)	2133
BspTNI	GGTCTC	3 cut(s)	757, 1129, 2182
BsrBI	CCGCTC	1 cut(s)	789
BsrDI	GCAATG	3 cut(s)	578, 864, 1824
BsrGI	TGTACA	1 cut(s)	1192
BsrI	ACTGG	6 cut(s)	235, 778, 1057, 1330, 2154, 2345
BssECI	CCNNGG	3 cut(s)	272, 1536, 1940
BssMI	GATC	6 cut(s)	541, 765, 1117, 1660, 2019, 2193
BssT1I	CCWWGG	2 cut(s)	272, 1536
Bst2UI	CCWGG	2 cut(s)	385, 1941
Bst4CI	ACNGT	4 cut(s)	98, 299, 326, 1949
Bst6I	CTCTTC	4 cut(s)	116, 1185, 1499, 2106
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	1192
BstC8I	GCNNGC	9 cut(s)	36, 269, 674, 957, 1558, 1589, 1651, 1762, 1788
BstDEI	CTNAG	8 cut(s)	39, 459, 504, 552, 1062, 1086, 1247, 2007
BstDSI	CCRYGG	1 cut(s)	1536
BstF5I	GGATG	6 cut(s)	56, 751, 891, 1999, 2002, 2320
BstFNI	CGCG	2 cut(s)	31, 808
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	3 cut(s)	250, 808, 1348
BstKTI	GATC	6 cut(s)	544, 768, 1120, 1663, 2022, 2196
BstMBI	GATC	6 cut(s)	541, 765, 1117, 1660, 2019, 2193
BstMWI	GCNNNNNNNGC	8 cut(s)	40, 98, 956, 1142, 1167, 1285, 1723, 1796
BstNI	CCWGG	2 cut(s)	385, 1941
BstNSI	RCATGY	5 cut(s)	226, 271, 1257, 1560, 1717
BstSCI	CCNGG	3 cut(s)	341, 383, 1939
BstSFI	CTRYAG	2 cut(s)	1800, 2154
BstUI	CGCG	2 cut(s)	31, 808
BstV1I	GCAGC	7 cut(s)	55, 113, 228, 823, 1145, 1720, 1786
BstV2I	GAAGAC	3 cut(s)	250, 1221, 2172
BstX2I	RGATCY	2 cut(s)	1117, 2019
BstYI	RGATCY	2 cut(s)	1117, 2019
Bsu15I	ATCGAT	1 cut(s)	798
BsuRI	GGCC	1 cut(s)	2255
BsuTUI	ATCGAT	1 cut(s)	798
BtgI	CCRYGG	1 cut(s)	1536
BtsCI	GGATG	6 cut(s)	56, 751, 891, 1999, 2002, 2320
BtsIMutI	CAGTG	2 cut(s)	771, 1070
BveI	ACCTGC	1 cut(s)	1439
Cac8I	GCNNGC	9 cut(s)	36, 269, 674, 957, 1558, 1589, 1651, 1762, 1788
CaiI	CAGNNNCTG	1 cut(s)	1733
CciI	TCATGA	1 cut(s)	2095
CfoI	GCGC	3 cut(s)	250, 808, 1348
ClaI	ATCGAT	1 cut(s)	798
CseI	GACGC	1 cut(s)	1739
Csp6I	GTAC	6 cut(s)	228, 410, 1032, 1193, 1945, 2134
CviQI	GTAC	6 cut(s)	228, 410, 1032, 1193, 1945, 2134
DdeI	CTNAG	8 cut(s)	39, 459, 504, 552, 1062, 1086, 1247, 2007
DpnI	GATC	6 cut(s)	543, 767, 1119, 1662, 2021, 2195
DpnII	GATC	6 cut(s)	541, 765, 1117, 1660, 2019, 2193
DraIII	CACNNNGTG	1 cut(s)	98
EaeI	YGGCCR	1 cut(s)	2253
Eam1104I	CTCTTC	4 cut(s)	116, 1185, 1499, 2106
EarI	CTCTTC	4 cut(s)	116, 1185, 1499, 2106
Ecl136II	GAGCTC	2 cut(s)	38, 1279
Eco130I	CCWWGG	2 cut(s)	272, 1536
Eco24I	GRGCYC	2 cut(s)	40, 1281
Eco31I	GGTCTC	3 cut(s)	757, 1129, 2182
Eco47III	AGCGCT	1 cut(s)	249
Eco53kI	GAGCTC	2 cut(s)	38, 1279
Eco57I	CTGAAG	3 cut(s)	1101, 1538, 2166
Eco88I	CYCGRG	2 cut(s)	1274, 1280
EcoICRI	GAGCTC	2 cut(s)	38, 1279
EcoRII	CCWGG	2 cut(s)	383, 1939
EcoT14I	CCWWGG	2 cut(s)	272, 1536
EcoT22I	ATGCAT	1 cut(s)	580
EcoT38I	GRGCYC	2 cut(s)	40, 1281
ErhI	CCWWGG	2 cut(s)	272, 1536
FauI	CCCGC	2 cut(s)	782, 1908
Fnu4HI	GCNGC	9 cut(s)	32, 44, 102, 217, 809, 812, 1134, 1734, 1800
FokI	GGATG	6 cut(s)	43, 758, 898, 1989, 2006, 2327
FriOI	GRGCYC	2 cut(s)	40, 1281
Fsp4HI	GCNGC	9 cut(s)	32, 44, 102, 217, 809, 812, 1134, 1734, 1800
FspBI	CTAG	3 cut(s)	273, 1685, 1787
GlaI	GCGC	3 cut(s)	249, 807, 1347
GluI	GCNGC	9 cut(s)	32, 44, 102, 217, 809, 812, 1134, 1734, 1800
GsaI	CCCAGC	2 cut(s)	1416, 1680
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	2255
HapII	CCGG	4 cut(s)	343, 883, 1121, 1836
HgaI	GACGC	1 cut(s)	1739
HhaI	GCGC	3 cut(s)	250, 808, 1348
Hin6I	GCGC	3 cut(s)	248, 806, 1346
HinP1I	GCGC	3 cut(s)	248, 806, 1346
HincII	GTYRAC	1 cut(s)	1579
HindII	GTYRAC	1 cut(s)	1579
HinfI	GANTC	9 cut(s)	182, 421, 824, 1222, 1496, 1609, 1972, 2209, 2259
HpaII	CCGG	4 cut(s)	343, 883, 1121, 1836
HphI	GGTGA	3 cut(s)	338, 1939, 2294
Hpy166II	GTNNAC	2 cut(s)	1579, 1898
Hpy188I	TCNGA	6 cut(s)	187, 507, 600, 1081, 1472, 1965
Hpy8I	GTNNAC	2 cut(s)	1579, 1898
HpyAV	CCTTC	3 cut(s)	1411, 1505, 2110
HpyCH4III	ACNGT	4 cut(s)	98, 299, 326, 1949
HpyCH4IV	ACGT	2 cut(s)	204, 1263
HpyF10VI	GCNNNNNNNGC	8 cut(s)	40, 98, 956, 1142, 1167, 1285, 1723, 1796
HpyF3I	CTNAG	8 cut(s)	39, 459, 504, 552, 1062, 1086, 1247, 2007
HpySE526I	ACGT	2 cut(s)	204, 1263
HspAI	GCGC	3 cut(s)	248, 806, 1346
KpnI	GGTACC	1 cut(s)	2137
Kzo9I	GATC	6 cut(s)	541, 765, 1117, 1660, 2019, 2193
LguI	GCTCTTC	1 cut(s)	1185
LmnI	GCTCC	3 cut(s)	1822, 2038, 2119
Lsp1109I	GCAGC	7 cut(s)	55, 113, 228, 823, 1145, 1720, 1786
LweI	GCATC	5 cut(s)	71, 227, 514, 1519, 1681
MaeI	CTAG	3 cut(s)	273, 1685, 1787
MaeII	ACGT	2 cut(s)	204, 1263
MaeIII	GTNAC	4 cut(s)	497, 1451, 1562, 2231
MalI	GATC	6 cut(s)	543, 767, 1119, 1662, 2021, 2195
MbiI	CCGCTC	1 cut(s)	789
MboI	GATC	6 cut(s)	541, 765, 1117, 1660, 2019, 2193
MfeI	CAATTG	1 cut(s)	1289
MflI	RGATCY	2 cut(s)	1117, 2019
MhlI	GDGCHC	3 cut(s)	25, 40, 1281
MlsI	TGGCCA	1 cut(s)	2255
MluNI	TGGCCA	1 cut(s)	2255
MlyI	GAGTC	5 cut(s)	176, 833, 1505, 1603, 1966
MmeI	TCCRAC	1 cut(s)	1931
Mox20I	TGGCCA	1 cut(s)	2255
Mph1103I	ATGCAT	1 cut(s)	580
MroXI	GAANNNNTTC	3 cut(s)	249, 350, 1179
MscI	TGGCCA	1 cut(s)	2255
MseI	TTAA	9 cut(s)	72, 171, 399, 633, 690, 1308, 1401, 1484, 2310
Msp20I	TGGCCA	1 cut(s)	2255
MspA1I	CMGCKG	1 cut(s)	1799
MspI	CCGG	4 cut(s)	343, 883, 1121, 1836
MspR9I	CCNGG	3 cut(s)	343, 385, 1941
MunI	CAATTG	1 cut(s)	1289
Mva1269I	GAATGC	5 cut(s)	552, 580, 952, 1348, 1917
MvaI	CCWGG	2 cut(s)	385, 1941
MvnI	CGCG	2 cut(s)	31, 808
MwoI	GCNNNNNNNGC	8 cut(s)	40, 98, 956, 1142, 1167, 1285, 1723, 1796
NciI	CCSGG	1 cut(s)	343
NcoI	CCATGG	1 cut(s)	1536
NdeII	GATC	6 cut(s)	541, 765, 1117, 1660, 2019, 2193
NheI	GCTAGC	1 cut(s)	1786
NlaIV	GGNNCC	2 cut(s)	1824, 2135
NmuCI	GTSAC	2 cut(s)	1562, 2231
NsiI	ATGCAT	1 cut(s)	580
NspI	RCATGY	5 cut(s)	226, 271, 1257, 1560, 1717
PaeI	GCATGC	2 cut(s)	271, 1560
PaeR7I	CTCGAG	1 cut(s)	1274
PagI	TCATGA	1 cut(s)	2095
PciI	ACATGT	1 cut(s)	1253
PciSI	GCTCTTC	1 cut(s)	1185
PctI	GAATGC	5 cut(s)	552, 580, 952, 1348, 1917
PdmI	GAANNNNTTC	3 cut(s)	249, 350, 1179
PfeI	GAWTC	4 cut(s)	421, 1222, 2209, 2259
PflFI	GACNNNGTC	1 cut(s)	1424
PfoI	TCCNGGA	1 cut(s)	383
PkrI	GCNGC	9 cut(s)	33, 45, 103, 218, 810, 813, 1135, 1735, 1801
PleI	GAGTC	5 cut(s)	176, 832, 1504, 1603, 1966
PpsI	GAGTC	5 cut(s)	176, 832, 1504, 1603, 1966
PscI	ACATGT	1 cut(s)	1253
PsiI	TTATAA	1 cut(s)	294
Psp124BI	GAGCTC	2 cut(s)	40, 1281
Psp1406I	AACGTT	1 cut(s)	204
Psp6I	CCWGG	2 cut(s)	383, 1939
PspFI	CCCAGC	2 cut(s)	1412, 1676
PspGI	CCWGG	2 cut(s)	383, 1939
PspN4I	GGNNCC	2 cut(s)	1824, 2135
PstI	CTGCAG	1 cut(s)	1804
PstNI	CAGNNNCTG	1 cut(s)	1733
PsuI	RGATCY	2 cut(s)	1117, 2019
PsyI	GACNNNGTC	1 cut(s)	1424
PvuII	CAGCTG	1 cut(s)	1799
RsaI	GTAC	6 cut(s)	229, 411, 1033, 1194, 1946, 2135
RsaNI	GTAC	6 cut(s)	228, 410, 1032, 1193, 1945, 2134
SacI	GAGCTC	2 cut(s)	40, 1281
SapI	GCTCTTC	1 cut(s)	1185
SaqAI	TTAA	9 cut(s)	72, 171, 399, 633, 690, 1308, 1401, 1484, 2310
SatI	GCNGC	9 cut(s)	32, 44, 102, 217, 809, 812, 1134, 1734, 1800
Sau3AI	GATC	6 cut(s)	541, 765, 1117, 1660, 2019, 2193
SchI	GAGTC	5 cut(s)	176, 833, 1505, 1603, 1966
ScrFI	CCNGG	3 cut(s)	343, 385, 1941
SduI	GDGCHC	3 cut(s)	25, 40, 1281
SfaNI	GCATC	5 cut(s)	71, 227, 514, 1519, 1681
SfcI	CTRYAG	2 cut(s)	1800, 2154
Sfr274I	CTCGAG	1 cut(s)	1274
SlaI	CTCGAG	1 cut(s)	1274
SmlI	CTYRAG	4 cut(s)	1274, 1456, 1611, 2281
SmoI	CTYRAG	4 cut(s)	1274, 1456, 1611, 2281
SphI	GCATGC	2 cut(s)	271, 1560
SsiI	CCGC	6 cut(s)	31, 789, 808, 1161, 1544, 1915
SspI	AATATT	1 cut(s)	1595
SspMI	CTAG	3 cut(s)	273, 1685, 1787
SstI	GAGCTC	2 cut(s)	40, 1281
StyD4I	CCNGG	3 cut(s)	341, 383, 1939
StyI	CCWWGG	2 cut(s)	272, 1536
TaaI	ACNGT	4 cut(s)	98, 299, 326, 1949
TaiI	ACGT	2 cut(s)	207, 1266
TaqI	TCGA	9 cut(s)	354, 544, 798, 912, 1275, 1494, 1499, 1672, 1879
TaqII	GACCGA	2 cut(s)	1215, 2206
TatI	WGTACW	2 cut(s)	1031, 1192
TauI	GCSGC	2 cut(s)	34, 811
TfiI	GAWTC	4 cut(s)	421, 1222, 2209, 2259
Tru1I	TTAA	9 cut(s)	72, 171, 399, 633, 690, 1308, 1401, 1484, 2310
Tru9I	TTAA	9 cut(s)	72, 171, 399, 633, 690, 1308, 1401, 1484, 2310
TscAI	CASTG	2 cut(s)	778, 1070
TseFI	GTSAC	2 cut(s)	1562, 2231
TseI	GCWGC	7 cut(s)	43, 101, 216, 811, 1133, 1733, 1799
Tsp45I	GTSAC	2 cut(s)	1562, 2231
TspGWI	ACGGA	3 cut(s)	274, 427, 2186
TspRI	CASTG	2 cut(s)	778, 1070
Tth111I	GACNNNGTC	1 cut(s)	1424
XapI	RAATTY	3 cut(s)	1074, 1831, 1959
XbaI	TCTAGA	1 cut(s)	1684
XceI	RCATGY	5 cut(s)	226, 271, 1257, 1560, 1717
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1947, 2248, 2312
XhoI	CTCGAG	1 cut(s)	1274
XmaJI	CCTAGG	1 cut(s)	272
XmnI	GAANNNNTTC	3 cut(s)	249, 350, 1179
XspI	CTAG	3 cut(s)	273, 1685, 1787
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.