Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013837

Physical Location & Seq

Genomic Coordinates Reverse (-)

55756567 .. 55757169

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0418600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGGACGGCGGCGAAGGTAGCCGAGATCAGTAGCGTGATGCACGGCAGGCTCCGCAGCTCGCCGGCAGTTCCGTCATCTGGGAAGTCCATGCAGACAGCCTCGATCCCCGTCGCGGCTGGGATATCGGGGCACAGCGTTAAAGGGGGTGATAGGTCGGCGATCGAGAAGTCGTTGCTGGAGGCGACGACGGAGGACTTTGTGGACTGGCAGGTGGTCGGCGATGGCGGCGGCGGGGAGTTGGTGATGAAGGCCGGCGAGCCGATGCCGAGGATTGTTTCAGGATCTGGAGGATGTGCCGGTGGTGTTTGCGACGGTGACGATGGAGGTGGTGATCGGGAACTCGTTGTTCGGGAAAGTAGGAACGGAAGGGATATCGGAAGCGGCGGGGGTTGGTTTGGCTGCGGTGACATGTGCTATGATTGCTGCTTGGATATCCATAATTGGGGTTTGTGTTGTGTTGCTGGTGACATTGGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

160

Amino Acids

16.26

Weight (kDa)

4.84

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02750
fragaria_vesca	FvH4_5g17170 FvH4_5g17170 FvH4_5g17170
malus_domestica	MD06G1230200.v1.1
prunus_persica	Prupe.5G231300_v2.0.a1
pyrus_communis	pycom06g20140
rosa_chinensis	RchiOBHm_Chr7g0178631
rosa_laevigata	RLG00000005428
rosa_multiflora	Rmu_sc0002320.1_g000006
rosa_rugosa	Rorug06G0418500 Rorug06G0418600 Rorug07G0253600
rosa_samantha	Rh7AG017300 Rh7BG016900 Rh7DG017500
rosa_wichuraiana	Rw7G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	202
AccII	CGCG	1 cut(s)	116
AciI	CCGC	9 cut(s)	11, 55, 116, 228, 231, 234, 384, 387, 405
AclWI	GGATC	2 cut(s)	100, 292
AfiI	CCNNNNNNNGG	3 cut(s)	80, 115, 445
AflIII	ACRYGT	1 cut(s)	411
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
AlwI	GGATC	2 cut(s)	100, 292
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	3 cut(s)	57, 402, 426
AsuHPI	GGTGA	6 cut(s)	161, 256, 329, 344, 419, 479
BaeGI	GKGCMC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	69, 389, 413
BccI	CCATC	2 cut(s)	218, 317
BceAI	ACGGC	2 cut(s)	24, 61
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	8 cut(s)	12, 58, 117, 229, 232, 385, 403, 427
BlsI	GCNGC	8 cut(s)	13, 59, 118, 230, 233, 386, 404, 428
BmiI	GGNNCC	1 cut(s)	53
BmsI	GCATC	2 cut(s)	30, 255
BpmI	CTGGAG	2 cut(s)	200, 309
BsaJI	CCNNGG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 115, 445
Bse118I	RCCGGY	3 cut(s)	64, 254, 299
Bse1I	ACTGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	3 cut(s)	80, 115, 445
BseNI	ACTGG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	135
BseXI	GCAGC	3 cut(s)	69, 389, 413
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	254
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	65, 255, 300
BslI	CCNNNNNNNGG	3 cut(s)	80, 115, 445
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	5 cut(s)	27, 105, 162, 284, 334
BspACI	CCGC	9 cut(s)	11, 55, 116, 228, 231, 234, 384, 387, 405
BspANI	GGCC	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	2 cut(s)	100, 292
BsrFI	RCCGGY	3 cut(s)	64, 254, 299
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	3 cut(s)	64, 254, 299
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	5 cut(s)	27, 105, 162, 284, 334
Bst4CI	ACNGT	1 cut(s)	317
BstC8I	GCNNGC	5 cut(s)	50, 62, 66, 256, 260
BstF5I	GGATG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	5 cut(s)	30, 108, 165, 287, 337
BstMBI	GATC	5 cut(s)	27, 105, 162, 284, 334
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 49, 54, 228, 423
BstNSI	RCATGY	1 cut(s)	415
BstSLI	GKGCMC	1 cut(s)	135
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	69, 389, 413
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	254
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	299
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	5 cut(s)	50, 62, 66, 256, 260
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr10I	RCCGGY	3 cut(s)	64, 254, 299
CviAII	CATG	2 cut(s)	91, 412
CviJI	RGCY	8 cut(s)	23, 52, 60, 101, 119, 254, 262, 402
CviKI_1	RGCY	8 cut(s)	23, 52, 60, 101, 119, 254, 262, 402
DpnI	GATC	5 cut(s)	29, 107, 164, 286, 336
DpnII	GATC	5 cut(s)	27, 105, 162, 284, 334
Eco32I	GATATC	3 cut(s)	126, 376, 436
EcoRV	GATATC	3 cut(s)	126, 376, 436
FaeI	CATG	2 cut(s)	94, 415
FaiI	YATR	4 cut(s)	92, 413, 420, 441
FatI	CATG	2 cut(s)	90, 411
FauI	CCCGC	2 cut(s)	227, 380
Fnu4HI	GCNGC	8 cut(s)	12, 58, 117, 229, 232, 385, 403, 427
FokI	GGATG	1 cut(s)	306
Fsp4HI	GCNGC	8 cut(s)	12, 58, 117, 229, 232, 385, 403, 427
GluI	GCNGC	8 cut(s)	12, 58, 117, 229, 232, 385, 403, 427
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	2 cut(s)	200, 309
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	3 cut(s)	65, 255, 300
Hin1II	CATG	2 cut(s)	94, 415
HinfI	GANTC	1 cut(s)	477
HpaII	CCGG	3 cut(s)	65, 255, 300
HphI	GGTGA	6 cut(s)	161, 256, 329, 344, 419, 479
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	380
Hpy188III	TCNNGA	5 cut(s)	166, 282, 288, 338, 353
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	4 cut(s)	116, 190, 193, 317
HpyAV	CCTTC	3 cut(s)	10, 244, 363
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	2 cut(s)	43, 94
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 49, 54, 228, 423
Hsp92II	CATG	2 cut(s)	94, 415
KroI	GCCGGC	2 cut(s)	64, 254
KroNI	GCCGGC	2 cut(s)	66, 256
Kzo9I	GATC	5 cut(s)	27, 105, 162, 284, 334
LmnI	GCTCC	1 cut(s)	57
Lsp1109I	GCAGC	3 cut(s)	69, 389, 413
LweI	GCATC	2 cut(s)	30, 255
MaeIII	GTNAC	3 cut(s)	317, 407, 467
MalI	GATC	5 cut(s)	29, 107, 164, 286, 336
MboI	GATC	5 cut(s)	27, 105, 162, 284, 334
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	1 cut(s)	442
MnlI	CCTC	6 cut(s)	112, 175, 187, 264, 284, 320
MroNI	GCCGGC	2 cut(s)	64, 254
MseI	TTAA	1 cut(s)	141
MspI	CCGG	3 cut(s)	65, 255, 300
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	5 cut(s)	20, 49, 54, 228, 423
NaeI	GCCGGC	2 cut(s)	66, 256
NdeII	GATC	5 cut(s)	27, 105, 162, 284, 334
NgoMIV	GCCGGC	2 cut(s)	64, 254
NlaIII	CATG	2 cut(s)	94, 415
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	2 cut(s)	49, 294
NmuCI	GTSAC	3 cut(s)	317, 407, 467
NspI	RCATGY	1 cut(s)	415
PaqCI	CACCTGC	1 cut(s)	202
PciI	ACATGT	1 cut(s)	411
PdiI	GCCGGC	2 cut(s)	66, 256
PfeI	GAWTC	1 cut(s)	477
PkrI	GCNGC	8 cut(s)	13, 59, 118, 230, 233, 386, 404, 428
Ple19I	CGATCG	1 cut(s)	165
PscI	ACATGT	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	284
PvuI	CGATCG	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	8 cut(s)	12, 58, 117, 229, 232, 385, 403, 427
Sau3AI	GATC	5 cut(s)	27, 105, 162, 284, 334
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	5 cut(s)	21, 62, 158, 216, 331
SfaNI	GCATC	2 cut(s)	30, 255
Sse9I	AATT	1 cut(s)	442
SsiI	CCGC	9 cut(s)	11, 55, 116, 228, 231, 234, 384, 387, 405
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	2 cut(s)	104, 165
TasI	AATT	1 cut(s)	442
TauI	GCSGC	5 cut(s)	14, 119, 231, 234, 387
TfiI	GAWTC	1 cut(s)	477
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	3 cut(s)	317, 407, 467
TseI	GCWGC	3 cut(s)	57, 402, 426
Tsp45I	GTSAC	3 cut(s)	317, 407, 467
TspDTI	ATGAA	1 cut(s)	263
TspGWI	ACGGA	3 cut(s)	63, 206, 381
XceI	RCATGY	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.