Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0013837

Physical Location & Seq

Genomic Coordinates Forward (+)

23624377 .. 23626315

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0253600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAATGGGCGGACAAGGCTGTTGGATTTCTATTGTCGTATATCAGTTTATCTATATTCACTTATTATACCTTTTGGGTCATTATTCTGCCATTTGTGAACAGTGATCACTTTATCCACCGGTATTTTTTACCCCAAGAATATGCCATCTTAATCCCTGTATTTGCTGGCATGGTGCTTCTTTGCTTTCTCTCCATATTCATTGGGTATGTGATGCTCAAATCCAAAAAGAAGAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

80

Amino Acids

9.41

Weight (kDa)

9.13

Isoelectric Point (pI)

22.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPM2	PF07297	4 - 78	1.2e-33	Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02750
fragaria_vesca	FvH4_5g17170 FvH4_5g17170 FvH4_5g17170
malus_domestica	MD06G1230200.v1.1
prunus_persica	Prupe.5G231300_v2.0.a1
pyrus_communis	pycom06g20140
rosa_chinensis	RchiOBHm_Chr7g0178631
rosa_laevigata	RLG00000005428
rosa_multiflora	Rmu_sc0002320.1_g000006
rosa_rugosa	Rorug06G0418500 Rorug06G0418600 Rorug07G0253600
rosa_samantha	Rh7AG017300 Rh7BG016900 Rh7DG017500
rosa_wichuraiana	Rw7G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	11
AgeI	ACCGGT	1 cut(s)	120
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
AsiGI	ACCGGT	1 cut(s)	120
BccI	CCATC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	106
BmsI	GCATC	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	120
Bse118I	RCCGGY	1 cut(s)	120
BshTI	ACCGGT	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	120
BssMI	GATC	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	169
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	120
CspAI	ACCGGT	1 cut(s)	120
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	2 cut(s)	20, 239
CviKI_1	RGCY	2 cut(s)	20, 239
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	26
FaeI	CATG	1 cut(s)	175
FaiI	YATR	7 cut(s)	42, 56, 69, 144, 173, 197, 210
FatI	CATG	1 cut(s)	171
FbaI	TGATCA	1 cut(s)	106
HapII	CCGG	1 cut(s)	121
Hin1II	CATG	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	237
HpaII	CCGG	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	106
LpnPI	CCDG	3 cut(s)	134, 153, 171
LweI	GCATC	1 cut(s)	204
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	4
MseI	TTAA	1 cut(s)	152
MspI	CCGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	1 cut(s)	175
PinAI	ACCGGT	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	106
SetI	ASST	2 cut(s)	74, 241
SfaNI	GCATC	1 cut(s)	204
SgeI	CNNG	6 cut(s)	28, 133, 149, 170, 180, 184
SsiI	CCGC	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TscAI	CASTG	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.