Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013837

Physical Location & Seq

Genomic Coordinates Forward (+)

67579610 .. 67582083

Gene Structure 2474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005428

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

ATGCGCGGGAGTTACCGTTTGACACAGTTACAGTACCGCAGCTTCTGCTCAAGCTCAGCCAAAACCCAGAAACCCATCATCATCAGTTTTGGAAATCCCACTAACCCAAACCCAATCCCATGGAAGAAAACAAAGACCCAGAAGCAGAAGAGTTCCATGAATAGGTTATCAAATGCTTCCGACTCGGAAGTTGTTAAATTTAACATGGAAATCAGTACCCAAATGCGCAATGGCCAATGCGAAAAGGCTCTGCGTGTGTTTAATGCAATGGGTCGGAGGAGTTCGGTTTCTTACAATGCTATGATATCTGGGTACGTGGCAAATGGGAAGTTTGATGATGCAAAGAACGTGTTCGACAAAATGCCTGAGAGAGACTTGGTGTCTTGGAATGTGATGCTTAGTGGGTATGTGAGGAATAGGGATCTTGGTGGGGCTCGAGCTTTGTTTGAACGTATGCCGGAAAAGGATGTTGTTTCATGGAATGCTATTTTATCTGGTTATGCTCAGAATGGTTATGTTGATGAGGCGAGGAAGGTTTTTGAAATGATGCCGAAAAGGAATGAGATATCTTGGAATGGGTTGCTCGCGGCTTATGTGCAGAATGGGAGGATAGAAAGTGCTAGGAGGTTGTTTGAGTCTAAGGCAGATTGGCAAGCAGTGTCTTGGAATTGTTTGATGGGGGGATTTGTGAAACAAAAGAGATTGGCTGATGCTAGGCAGCTTTTCGAGAGAATGCCTGCGAGGGATGAAGTTTCGTGGAATACTATGATCACAGGGTATGCACAGAATGGGGGAATGTCAGAAGCAAGGAGATTGTTTGAGGAGTCTCCTGTAAGGGATGTGTTTGCGTGGACAGCAATGCTTTCGGGTTATGTGCAGAATGGGATGTTGGATGAAGCAAGACGAATTTTTGATGAAATGCCAGAGAAGAATTCGGTTTCATGGAATGCAATGATTGCAGGGTATGTGCAAGACAAGAGAATGGACATGGCGGTGAAATTGTTTGAGGCAATGCCTTTTAAGAATGTGAGTTCTTGGAATACCATTTTAACTGGCTATGCTCAGAGCGGCGATATTGATGGTGCTAGGAAAGTCTTTGATAGCATGCCTCGGCGTGATTCCATCTCTTGGGCGGCTATCATTGCTGGCCATGCTCAAAATGGTTTCGGTGAAGAGGCTTTGCGTCTATTTGTGGAGATGAAAAGAGATGGGGAACGGCTGACTAGGTCTACATTTTCGTGTGCCTTGAGCACATGTGCTGAAGTTGCTGCTTTAGAGTTGGGGAAGCAATTACATGGGCGTTTAGCGAAAGCAGGATTCGAAAGTGGGTGCTATGTGGGCAATGCACTCCTTGTGATGTACTGCAAGTGTGGATGCATAGAGGAAGCATACGATGCTTTCCAAGAAATATCTGAAAAGGATGTTGTCTCGTGGAACACGATGATCTATGGTTATGCAAGGCATGGATTTGGCTCAAAGGCTCTCATGGTTTTTGATTCAATGAAGGCAGCTGGTATTAAACCTGATGAAGTAACAATGGTGGGTGTATTGTCTGCTTGTAGTCATACTGGCTTTGTGGACAGGGGAAGGGAATACTTTCATTCAATGAATCGGGAATATGGCATCACAGCAAATGCAAAACACTATACCTGCCTGATTGATCTTTTAGAGAAGGACAATATATATGCCTTCTTGGAGGAGTTGGATCTGAAAATGAAGCGGGAGGGATATGTTTCATCTACAAAGTTGGTTTTGCACGACGTTGAAGAGGAGGAGAAAGAGCACATGCTGAGGCATCACAGTGAGAAATTGGCTGTGGCATTTGGGATTCTTACAATTCCAGCAGGGAGGCCAATCCGTGTAATGAAGAACTTGCGAGTATGTGAAGACTGCCACAATGCCATCAAATACATATCCAAGATTGTGGGAAGGACAATAATCTTAAGGGATTCTAACCGCTTCCACCACTTCAGTGAGGGTTCTTGTTCTTGCGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

669

Amino Acids

75.68

Weight (kDa)

8.76

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	94 - 124	1.5e-07	PPR repeat family
PPR	PF01535	96 - 125	1.1e-08	PPR repeat
PPR	PF01535	127 - 156	1.4e-06	PPR repeat
PPR_2	PF13041	155 - 187	6.3e-08	PPR repeat family
PPR_1	PF12854	156 - 183	1.6e-06	PPR repeat
PPR	PF01535	158 - 187	3.6e-08	PPR repeat
PPR	PF01535	251 - 275	2.3e-06	PPR repeat
PPR_2	PF13041	279 - 311	5.1e-07	PPR repeat family
PPR	PF01535	283 - 311	1.1e-08	PPR repeat
PPR_2	PF13041	310 - 343	1.2e-07	PPR repeat family
PPR	PF01535	313 - 341	1.3e-06	PPR repeat
PPR_2	PF13041	341 - 372	3.4e-06	PPR repeat family
PPR	PF01535	345 - 372	4.2e-06	PPR repeat
PPR_2	PF13041	373 - 420	1.4e-06	PPR repeat family
PPR	PF01535	375 - 404	7.7e-06	PPR repeat
PPR_2	PF13041	473 - 521	4.1e-12	PPR repeat family
PPR	PF01535	476 - 506	2.4e-08	PPR repeat
DYW_deaminase	PF14432	576 - 668	1.5e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02750
fragaria_vesca	FvH4_5g17170 FvH4_5g17170 FvH4_5g17170
malus_domestica	MD06G1230200.v1.1
prunus_persica	Prupe.5G231300_v2.0.a1
pyrus_communis	pycom06g20140
rosa_chinensis	RchiOBHm_Chr7g0178631
rosa_laevigata	RLG00000005428
rosa_multiflora	Rmu_sc0002320.1_g000006
rosa_rugosa	Rorug06G0418500 Rorug06G0418600 Rorug07G0253600
rosa_samantha	Rh7AG017300 Rh7BG016900 Rh7DG017500
rosa_wichuraiana	Rw7G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	1658
AccB7I	CCANNNNNTGG	1 cut(s)	1128
AccBSI	CCGCTC	1 cut(s)	1068
AccI	GTMKAC	1 cut(s)	1229
AccII	CGCG	2 cut(s)	6, 587
AciI	CCGC	9 cut(s)	6, 37, 587, 992, 1068, 1133, 1720, 1957, 1992
AclWI	GGATC	2 cut(s)	429, 1713
AcoI	YGGCCR	2 cut(s)	232, 1147
AcsI	RAATTY	3 cut(s)	197, 906, 931
AcuI	CTGAAG	2 cut(s)	1281, 1954
AfaI	GTAC	4 cut(s)	35, 217, 314, 1361
AfiI	CCNNNNNNNGG	2 cut(s)	162, 1128
AflII	CTTAAG	1 cut(s)	1942
AflIII	ACRYGT	2 cut(s)	348, 1253
AgsI	TTSAA	5 cut(s)	449, 542, 1500, 1605, 1766
AhdI	GACNNNNNGTC	1 cut(s)	379
AjuI	GAANNNNNNNTTGG	2 cut(s)	872, 904
AleI	CACNNNNGTG	1 cut(s)	1971
AluBI	AGCT	5 cut(s)	42, 54, 440, 721, 1511
AluI	AGCT	5 cut(s)	42, 54, 440, 721, 1511
Alw21I	GWGCWC	2 cut(s)	1253, 1785
Alw26I	GTCTC	3 cut(s)	366, 831, 1432
AlwI	GGATC	2 cut(s)	429, 1713
AlwNI	CAGNNNCTG	1 cut(s)	45
Ama87I	CYCGRG	1 cut(s)	435
AoxI	GGCC	3 cut(s)	232, 1147, 1850
ApeKI	GCWGC	4 cut(s)	39, 718, 1268, 1508
ApoI	RAATTY	3 cut(s)	197, 906, 931
Asp700I	GAANNNNTTC	2 cut(s)	350, 1596
AspLEI	GCGC	2 cut(s)	6, 228
AsuHPI	GGTGA	2 cut(s)	1006, 1181
AsuII	TTCGAA	1 cut(s)	1320
AvaI	CYCGRG	1 cut(s)	435
BalI	TGGCCA	2 cut(s)	234, 1149
BanII	GRGCYC	1 cut(s)	436
BarI	GAAGNNNNNNTAC	2 cut(s)	26, 58
BauI	CACGAG	1 cut(s)	1429
BbsI	GAAGAC	1 cut(s)	1893
Bbv12I	GWGCWC	2 cut(s)	1253, 1785
BbvCI	CCTCAGC	1 cut(s)	1790
BbvI	GCAGC	4 cut(s)	51, 730, 1255, 1520
BccI	CCATC	6 cut(s)	83, 670, 1073, 1130, 1202, 1910
BceAI	ACGGC	1 cut(s)	1232
BcgI	CGANNNNNNTGC	2 cut(s)	846, 880
BclI	TGATCA	1 cut(s)	768
BcoDI	GTCTC	3 cut(s)	366, 831, 1432
BfaI	CTAG	4 cut(s)	621, 714, 1086, 1224
BfrI	CTTAAG	1 cut(s)	1942
BfuAI	ACCTGC	1 cut(s)	1658
BisI	GCNGC	7 cut(s)	40, 588, 719, 1069, 1134, 1269, 1509
BlpI	GCTNAGC	1 cut(s)	55
BlsI	GCNGC	7 cut(s)	41, 589, 720, 1070, 1135, 1270, 1510
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmeT110I	CYCGRG	1 cut(s)	435
BmsI	GCATC	8 cut(s)	328, 384, 537, 700, 1364, 1384, 1632, 1804
BpiI	GAAGAC	1 cut(s)	1893
Bpu10I	CCTNAGC	1 cut(s)	1790
Bpu1102I	GCTNAGC	1 cut(s)	55
Bpu14I	TTCGAA	1 cut(s)	1320
BpuEI	CTTGAG	2 cut(s)	34, 1267
BsaAI	YACGTR	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	119, 1109
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 1128
Bse1I	ACTGG	2 cut(s)	1057, 1573
Bse3DI	GCAATG	7 cut(s)	235, 273, 864, 957, 1017, 1140, 1348
BseDI	CCNNGG	2 cut(s)	119, 1109
BseGI	GGATG	7 cut(s)	472, 751, 844, 891, 898, 1379, 1426
BseLI	CCNNNNNNNGG	2 cut(s)	162, 1128
BseMI	GCAATG	7 cut(s)	235, 273, 864, 957, 1017, 1140, 1348
BseMII	CTCAG	5 cut(s)	69, 357, 518, 1076, 1781
BseNI	ACTGG	2 cut(s)	1057, 1573
BseRI	GAGGAG	5 cut(s)	292, 836, 1712, 1784, 1787
BseXI	GCAGC	4 cut(s)	51, 730, 1255, 1520
BsgI	GTGCAG	2 cut(s)	617, 896
Bsh1236I	CGCG	2 cut(s)	6, 587
BshFI	GGCC	3 cut(s)	234, 1149, 1852
BsiHKAI	GWGCWC	2 cut(s)	1253, 1785
BsiHKCI	CYCGRG	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	458
BslI	CCNNNNNNNGG	2 cut(s)	162, 1128
BsmAI	GTCTC	3 cut(s)	366, 831, 1432
BsmI	GAATGC	3 cut(s)	487, 738, 952
BsnI	GGCC	3 cut(s)	234, 1149, 1852
BsoBI	CYCGRG	1 cut(s)	435
Bsp119I	TTCGAA	1 cut(s)	1320
Bsp1286I	GDGCHC	3 cut(s)	436, 1253, 1785
Bsp143I	GATC	5 cut(s)	421, 768, 1443, 1660, 1705
Bsp1720I	GCTNAGC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	9 cut(s)	6, 37, 587, 992, 1068, 1133, 1720, 1957, 1992
BspANI	GGCC	3 cut(s)	234, 1149, 1852
BspCNI	CTCAG	5 cut(s)	68, 358, 517, 1075, 1782
BspFNI	CGCG	2 cut(s)	6, 587
BspMI	ACCTGC	1 cut(s)	1658
BspPI	GGATC	2 cut(s)	429, 1713
BspT104I	TTCGAA	1 cut(s)	1320
BspTI	CTTAAG	1 cut(s)	1942
BsrBI	CCGCTC	1 cut(s)	1068
BsrDI	GCAATG	7 cut(s)	235, 273, 864, 957, 1017, 1140, 1348
BsrI	ACTGG	2 cut(s)	1057, 1573
BssECI	CCNNGG	2 cut(s)	119, 1109
BssMI	GATC	5 cut(s)	421, 768, 1443, 1660, 1705
BssSI	CACGAG	1 cut(s)	1429
BssT1I	CCWWGG	1 cut(s)	119
Bst2BI	CACGAG	1 cut(s)	1429
Bst4CI	ACNGT	4 cut(s)	17, 27, 33, 1802
Bst6I	CTCTTC	3 cut(s)	143, 1167, 1761
BstAFI	CTTAAG	1 cut(s)	1942
BstAPI	GCANNNNNTGC	3 cut(s)	45, 956, 1394
BstBAI	YACGTR	1 cut(s)	316
BstBI	TTCGAA	1 cut(s)	1320
BstC8I	GCNNGC	5 cut(s)	585, 654, 738, 1106, 1147
BstDEI	CTNAG	7 cut(s)	55, 366, 398, 504, 639, 1062, 1790
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	7 cut(s)	472, 751, 844, 891, 898, 1379, 1426
BstFNI	CGCG	2 cut(s)	6, 587
BstHHI	GCGC	2 cut(s)	6, 228
BstKTI	GATC	5 cut(s)	424, 771, 1446, 1663, 1708
BstMAI	GTCTC	3 cut(s)	366, 831, 1432
BstMBI	GATC	5 cut(s)	421, 768, 1443, 1660, 1705
BstMWI	GCNNNNNNNGC	8 cut(s)	45, 854, 956, 1142, 1151, 1265, 1338, 1394
BstNSI	RCATGY	3 cut(s)	1108, 1257, 1789
BstUI	CGCG	2 cut(s)	6, 587
BstV1I	GCAGC	4 cut(s)	51, 730, 1255, 1520
BstV2I	GAAGAC	1 cut(s)	1893
BstX2I	RGATCY	2 cut(s)	421, 1705
BstXI	CCANNNNNNTGG	2 cut(s)	120, 1924
BstYI	RGATCY	2 cut(s)	421, 1705
BsuRI	GGCC	3 cut(s)	234, 1149, 1852
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	7 cut(s)	472, 751, 844, 891, 898, 1379, 1426
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	3 cut(s)	663, 1807, 1978
BveI	ACCTGC	1 cut(s)	1658
Cac8I	GCNNGC	5 cut(s)	585, 654, 738, 1106, 1147
CaiI	CAGNNNCTG	1 cut(s)	45
CfoI	GCGC	2 cut(s)	6, 228
CseI	GACGC	1 cut(s)	1172
Csp6I	GTAC	4 cut(s)	34, 216, 313, 1360
CviQI	GTAC	4 cut(s)	34, 216, 313, 1360
DdeI	CTNAG	7 cut(s)	55, 366, 398, 504, 639, 1062, 1790
DpnI	GATC	5 cut(s)	423, 770, 1445, 1662, 1707
DpnII	GATC	5 cut(s)	421, 768, 1443, 1660, 1705
DriI	GACNNNNNGTC	1 cut(s)	379
EaeI	YGGCCR	2 cut(s)	232, 1147
Eam1104I	CTCTTC	3 cut(s)	143, 1167, 1761
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	3 cut(s)	143, 1167, 1761
Eco130I	CCWWGG	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	436
Eco32I	GATATC	2 cut(s)	306, 567
Eco57I	CTGAAG	2 cut(s)	1281, 1954
Eco88I	CYCGRG	1 cut(s)	435
EcoRI	GAATTC	1 cut(s)	931
EcoRV	GATATC	2 cut(s)	306, 567
EcoT14I	CCWWGG	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	1379
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	119
FauI	CCCGC	2 cut(s)	1713, 1985
FbaI	TGATCA	1 cut(s)	768
FblI	GTMKAC	1 cut(s)	1229
Fnu4HI	GCNGC	7 cut(s)	40, 588, 719, 1069, 1134, 1269, 1509
FokI	GGATG	7 cut(s)	479, 758, 851, 898, 905, 1386, 1433
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	7 cut(s)	40, 588, 719, 1069, 1134, 1269, 1509
FspBI	CTAG	4 cut(s)	621, 714, 1086, 1224
FspI	TGCGCA	1 cut(s)	227
GlaI	GCGC	2 cut(s)	5, 227
GluI	GCNGC	7 cut(s)	40, 588, 719, 1069, 1134, 1269, 1509
HaeIII	GGCC	3 cut(s)	234, 1149, 1852
HapII	CCGG	1 cut(s)	458
HgaI	GACGC	1 cut(s)	1172
HhaI	GCGC	2 cut(s)	6, 228
Hin6I	GCGC	2 cut(s)	4, 226
HinP1I	GCGC	2 cut(s)	4, 226
HinfI	GANTC	9 cut(s)	182, 635, 824, 1118, 1317, 1496, 1609, 1828, 1949
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	2 cut(s)	1006, 1181
Hpy166II	GTNNAC	3 cut(s)	852, 1230, 1579
Hpy188I	TCNGA	8 cut(s)	181, 187, 276, 507, 802, 1065, 1414, 1710
Hpy188III	TCNNGA	2 cut(s)	727, 1613
Hpy8I	GTNNAC	3 cut(s)	852, 1230, 1579
Hpy99I	CGWCG	1 cut(s)	1763
HpyAV	CCTTC	6 cut(s)	526, 1498, 1581, 1666, 1699, 1923
HpyCH4III	ACNGT	4 cut(s)	17, 27, 33, 1802
HpyCH4IV	ACGT	4 cut(s)	315, 348, 451, 1761
HpyF10VI	GCNNNNNNNGC	8 cut(s)	45, 854, 956, 1142, 1151, 1265, 1338, 1394
HpyF3I	CTNAG	7 cut(s)	55, 366, 398, 504, 639, 1062, 1790
HpySE526I	ACGT	4 cut(s)	315, 348, 451, 1761
HspAI	GCGC	2 cut(s)	4, 226
Ksp22I	TGATCA	1 cut(s)	768
Kzo9I	GATC	5 cut(s)	421, 768, 1443, 1660, 1705
Lsp1109I	GCAGC	4 cut(s)	51, 730, 1255, 1520
LweI	GCATC	8 cut(s)	328, 384, 537, 700, 1364, 1384, 1632, 1804
MaeI	CTAG	4 cut(s)	621, 714, 1086, 1224
MaeII	ACGT	4 cut(s)	315, 348, 451, 1761
MaeIII	GTNAC	3 cut(s)	11, 27, 1531
MalI	GATC	5 cut(s)	423, 770, 1445, 1662, 1707
MbiI	CCGCTC	1 cut(s)	1068
MboI	GATC	5 cut(s)	421, 768, 1443, 1660, 1705
MboII	GAAGA	7 cut(s)	136, 160, 940, 1184, 1778, 1879, 1898
MflI	RGATCY	2 cut(s)	421, 1705
MhlI	GDGCHC	3 cut(s)	436, 1253, 1785
MlsI	TGGCCA	2 cut(s)	234, 1149
MluCI	AATT	8 cut(s)	197, 667, 906, 931, 998, 1289, 1808, 1836
MluNI	TGGCCA	2 cut(s)	234, 1149
MlyI	GAGTC	3 cut(s)	176, 644, 833
MmeI	TCCRAC	4 cut(s)	204, 254, 870, 1683
Mox20I	TGGCCA	2 cut(s)	234, 1149
Mph1103I	ATGCAT	1 cut(s)	1379
MroXI	GAANNNNTTC	2 cut(s)	350, 1596
MscI	TGGCCA	2 cut(s)	234, 1149
MseI	TTAA	7 cut(s)	195, 201, 261, 1020, 1049, 1518, 1943
MslI	CAYNNNNRTG	4 cut(s)	992, 1237, 1800, 1971
Msp20I	TGGCCA	2 cut(s)	234, 1149
MspA1I	CMGCKG	1 cut(s)	1511
MspCI	CTTAAG	1 cut(s)	1942
MspI	CCGG	1 cut(s)	458
Mva1269I	GAATGC	3 cut(s)	487, 738, 952
MvnI	CGCG	2 cut(s)	6, 587
MwoI	GCNNNNNNNGC	8 cut(s)	45, 854, 956, 1142, 1151, 1265, 1338, 1394
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	5 cut(s)	421, 768, 1443, 1660, 1705
NmeAIII	GCCGAG	1 cut(s)	1090
NsbI	TGCGCA	1 cut(s)	227
NsiI	ATGCAT	1 cut(s)	1379
NspI	RCATGY	3 cut(s)	1108, 1257, 1789
NspV	TTCGAA	1 cut(s)	1320
OliI	CACNNNNGTG	1 cut(s)	1971
PaeI	GCATGC	1 cut(s)	1108
PaeR7I	CTCGAG	1 cut(s)	435
PciI	ACATGT	1 cut(s)	1253
PcsI	WCGNNNNNNNCGW	1 cut(s)	1436
PctI	GAATGC	3 cut(s)	487, 738, 952
PdmI	GAANNNNTTC	2 cut(s)	350, 1596
PfeI	GAWTC	6 cut(s)	1118, 1317, 1496, 1609, 1828, 1949
PflFI	GACNNNGTC	1 cut(s)	1225
PflMI	CCANNNNNTGG	1 cut(s)	1128
PkrI	GCNGC	7 cut(s)	41, 589, 720, 1070, 1135, 1270, 1510
PleI	GAGTC	3 cut(s)	176, 643, 832
PpsI	GAGTC	3 cut(s)	176, 643, 832
Ppu21I	YACGTR	1 cut(s)	316
PscI	ACATGT	1 cut(s)	1253
PspXI	VCTCGAGB	1 cut(s)	435
PstNI	CAGNNNCTG	1 cut(s)	45
PsuI	RGATCY	2 cut(s)	421, 1705
PsyI	GACNNNGTC	1 cut(s)	1225
PvuII	CAGCTG	1 cut(s)	1511
RsaI	GTAC	4 cut(s)	35, 217, 314, 1361
RsaNI	GTAC	4 cut(s)	34, 216, 313, 1360
RseI	CAYNNNNRTG	4 cut(s)	992, 1237, 1800, 1971
SaqAI	TTAA	7 cut(s)	195, 201, 261, 1020, 1049, 1518, 1943
SatI	GCNGC	7 cut(s)	40, 588, 719, 1069, 1134, 1269, 1509
Sau3AI	GATC	5 cut(s)	421, 768, 1443, 1660, 1705
SchI	GAGTC	3 cut(s)	176, 644, 833
SduI	GDGCHC	3 cut(s)	436, 1253, 1785
SfaNI	GCATC	8 cut(s)	328, 384, 537, 700, 1364, 1384, 1632, 1804
Sfr274I	CTCGAG	1 cut(s)	435
SfuI	TTCGAA	1 cut(s)	1320
SlaI	CTCGAG	1 cut(s)	435
SmiMI	CAYNNNNRTG	4 cut(s)	992, 1237, 1800, 1971
SmlI	CTYRAG	4 cut(s)	49, 435, 1246, 1942
SmoI	CTYRAG	4 cut(s)	49, 435, 1246, 1942
SphI	GCATGC	1 cut(s)	1108
Sse9I	AATT	8 cut(s)	197, 667, 906, 931, 998, 1289, 1808, 1836
SsiI	CCGC	9 cut(s)	6, 37, 587, 992, 1068, 1133, 1720, 1957, 1992
SspMI	CTAG	4 cut(s)	621, 714, 1086, 1224
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	4 cut(s)	17, 27, 33, 1802
TaiI	ACGT	4 cut(s)	318, 351, 454, 1764
TaqI	TCGA	4 cut(s)	354, 436, 726, 1320
TasI	AATT	8 cut(s)	197, 667, 906, 931, 998, 1289, 1808, 1836
TatI	WGTACW	1 cut(s)	1359
TauI	GCSGC	3 cut(s)	590, 1071, 1136
TfiI	GAWTC	6 cut(s)	1118, 1317, 1496, 1609, 1828, 1949
Tru1I	TTAA	7 cut(s)	195, 201, 261, 1020, 1049, 1518, 1943
Tru9I	TTAA	7 cut(s)	195, 201, 261, 1020, 1049, 1518, 1943
TscAI	CASTG	3 cut(s)	663, 1807, 1978
TseI	GCWGC	4 cut(s)	39, 718, 1268, 1508
TspGWI	ACGGA	1 cut(s)	1847
TspRI	CASTG	3 cut(s)	663, 1807, 1978
Tth111I	GACNNNGTC	1 cut(s)	1225
Van91I	CCANNNNNTGG	1 cut(s)	1128
Vha464I	CTTAAG	1 cut(s)	1942
XapI	RAATTY	3 cut(s)	197, 906, 931
XceI	RCATGY	3 cut(s)	1108, 1257, 1789
XcmI	CCANNNNNNNNNTGG	2 cut(s)	227, 1157
XhoI	CTCGAG	1 cut(s)	435
XmiI	GTMKAC	1 cut(s)	1229
XmnI	GAANNNNTTC	2 cut(s)	350, 1596
XspI	CTAG	4 cut(s)	621, 714, 1086, 1224
Zsp2I	ATGCAT	1 cut(s)	1379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.