Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0013837

Physical Location & Seq

Genomic Coordinates Reverse (-)

1415781 .. 1418890

Gene Structure 3110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG017500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGCGCGGGAGTTACCGTTTGACACAGTTACAGTACCGCAGCTTCTGCTCAAGCTCAGCCAAAGCCCAGAAACCCATCGACATCAGTTTTGGAAACCCCACTAACCCAAACCCAATCCCATGGAAGAAAACAAAGACCCAGAAGCAGAAGAGTTCCCTGAATAGGTTATCAAATGCTTCCGACTCGGAAGTTGTTAAATTTAACATGGAAATCAGTACCCAAATGCGCAATGGCCAATGCGAAGAGGCTCTGCGTGTGTTTAATGCAATGGGTCGGAGGAGTTCGGTTTCTTACAATGCTATGATATCTGGGTACTTGGCAAATGGGAAGTTTGATGATGCAAAGAACGTGTTCGACAAAATGCCTGAGAGAGACTTGGTGTCTTGGAATGTGATGCTTAGTGGGTATGTGAGGAATAGGGATCTTGGTGGGGCTCGTGCTTTGTTTGAACGTATGCCGGAAAAGGATGTTGTTTCATGGAATGCCATTTTATCTGGCTATGCCCAGAATGGTTATGTTGATGAGGCGAGGAATGTTTTTGAAATGATGCCGAAAAAGAATGAGATATCTTGGAATGGGTTGCTTGCGGCTTATGTGCAGAATGGGAGGATAGAAAGTGCTAGGAGGTTGTTTGAGTCTAAGGCAGATTGGCAAGCAGTGTCTTGGAATTGTTTGATGGGGGGATTTGTGAAACAAAAGAGATTAGTTGATGCTAGGCAGCTTTTCGACAGGATGCCTGCGAGGGATGAAGTTTCGTGGAATACTATGATCACAGGGTATGCACAGAATGGGGGAATGTCAGAAGCAAGGAGATTGTTTGAGAAGTCTCCTGTAAGGGATGTGTTTGCGTGGACAGCAATGCTTTCAGGTTATGTGCAGAATGGGATGTTGGATGAAGCAAGACGAATTTTTGATGAAATGCCAGAGAAAAATTTGGTTTCGTGGAATGCAATGATTGCAGGGTATGTGCAAGACAAGAGAATGGACATGGCGGTGAAATTGTTCGAGGCAATGCCTTTTAAGAATGTGAGTTCTTGGAATACCATTTTAACTGGCTATGCTCAGAGCGGCGATATTGATGGTGCTAGGAAAGTCTTTGATAGCATGCCTCGGCGTGATTCCATCTCTTGGGCGGCTATCATTGCTGGCCATGCTCAAAATGGTTTCGGTGAAGAGGCTTTGCGTCTATTTGTGGAGATGAAAAGAGATGGGGAACGACTGACTAGGTCTACATTTTCTTGTGCTTTGAGCACATGTGCTGAAGTTGCTGCTTTAGAGTTGGGGAAGCAATTACATGGGAGTTTAGCAAAAGCAGGATTCGAAAGTGGGTGCTATGTGGGCAATGCACTCCTTGTGATGTACTGCAAGTGTGGATGCATAGAGGAAGCATACGATGCGTTCCAAGAAATATCTGAAAAGGATGTTGTCTCGTGGAACACGATGATCTATGGTTATGCAAGGCATGGATTTGGCTCAAAGGCTCTCATGGTTTTCGATTCAATGAAGGCAGCTGGTATTAAACCTGATGAAGTAACAATGGTGGGTGTATTGTCTGCTTGTAGTCATACTGGCTTTGTGGACAGGGGAAGGGAATACTTTCATTCAATGAATCGGGAGTATGGCATCACAGCAAATGCAAAACACTATACCTGCCTGATTGATCTTTTAGGTAGAGCTGGGCGCCTGGAAGAAGCGCAGAATTTAATGAGAACGATGCCTTTTGAACCAGATGCTGCAACATGGGGAGCTCTACTTGGCGCAAGCCGCATTCATGGCAATACTGAATTAGGAGAAAAGGCTGCTAAGATAATTTTTGAGATGGAACCTGAAAATGCAGGAATGTATGTTCTTCTCTCAAATTTATATGCTTCTTCAGGCAGATGGGGTGATGTTGGTAAAATGAGATTGAAAATGAGAGATAAAGGTGTCAGGAAAGTTCCTGGATATAGCTGGATTGAAGTGCAAAACAAGATTCACACATTTTCAGTTGGGGACTCTATACACCCAGAGAAGGACAATATATATGCCTTCTTGGAAGAGTTGGATCTGAAAATGAAGCGGGAGGGATATGTTTCATCTACAAAGTTGGTTTTGCACGACGTTGAAGAGGAGGAGAAAGAGCACATGCTGAGGCATCACAGTGAGAAATTGGCTGTGGCATTTGGGATTCTTTCAATTCCAGCAGGGAGGCCAATCCGTGTAATGAAGAACTTGCGAGTATGTGAAGACTGCCACAATGCCATCAAATACATATCCAAGATTGTGGGAAGGACAATAATCTTAAGGGATTCTAACCGCTTCCACCATTTCAGTGAGGGTTCTTGTTCTTGCGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

781

Amino Acids

88.09

Weight (kDa)

8.66

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	94 - 124	1.7e-07	PPR repeat family
PPR	PF01535	96 - 125	4.1e-08	PPR repeat
PPR	PF01535	127 - 156	1.7e-06	PPR repeat
PPR_2	PF13041	155 - 187	2.8e-07	PPR repeat family
PPR_1	PF12854	156 - 183	7.6e-06	PPR repeat
PPR	PF01535	158 - 187	1.4e-07	PPR repeat
PPR	PF01535	251 - 275	5.8e-06	PPR repeat
PPR_2	PF13041	279 - 312	3e-07	PPR repeat family
PPR	PF01535	283 - 311	9.2e-09	PPR repeat
PPR_2	PF13041	311 - 343	3.7e-07	PPR repeat family
PPR	PF01535	313 - 341	1.6e-06	PPR repeat
PPR_2	PF13041	341 - 372	4.1e-06	PPR repeat family
PPR	PF01535	345 - 372	5e-06	PPR repeat
PPR_2	PF13041	373 - 420	1.7e-06	PPR repeat family
PPR	PF01535	375 - 404	9.2e-06	PPR repeat
PPR_2	PF13041	473 - 521	5e-12	PPR repeat family
PPR	PF01535	476 - 506	2.9e-08	PPR repeat
E_motif	PF20431	591 - 653	5.4e-22	E motif
DYW_deaminase	PF14432	689 - 781	3.8e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02750
fragaria_vesca	FvH4_5g17170 FvH4_5g17170 FvH4_5g17170
malus_domestica	MD06G1230200.v1.1
prunus_persica	Prupe.5G231300_v2.0.a1
pyrus_communis	pycom06g20140
rosa_chinensis	RchiOBHm_Chr7g0178631
rosa_laevigata	RLG00000005428
rosa_multiflora	Rmu_sc0002320.1_g000006
rosa_rugosa	Rorug06G0418500 Rorug06G0418600 Rorug07G0253600
rosa_samantha	Rh7AG017300 Rh7BG016900 Rh7DG017500
rosa_wichuraiana	Rw7G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	1658
AccB1I	GGYRCC	1 cut(s)	1680
AccB7I	CCANNNNNTGG	1 cut(s)	1128
AccBSI	CCGCTC	1 cut(s)	1068
AccI	GTMKAC	1 cut(s)	1229
AccII	CGCG	1 cut(s)	6
AclWI	GGATC	2 cut(s)	429, 2052
AcoI	YGGCCR	2 cut(s)	232, 1147
AcsI	RAATTY	5 cut(s)	197, 906, 931, 1699, 1858
AcuI	CTGAAG	2 cut(s)	1281, 1857
AcyI	GRCGYC	1 cut(s)	1681
AfaI	GTAC	4 cut(s)	35, 217, 314, 1361
AfiI	CCNNNNNNNGG	3 cut(s)	162, 1128, 2011
AflII	CTTAAG	1 cut(s)	2281
AflIII	ACRYGT	2 cut(s)	348, 1253
AgsI	TTSAA	9 cut(s)	449, 542, 1500, 1605, 1724, 1909, 1958, 2105, 2175
AhdI	GACNNNNNGTC	1 cut(s)	379
AjnI	CCWGG	2 cut(s)	1683, 1939
AjuI	GAANNNNNNNTTGG	2 cut(s)	872, 904
AloI	GAACNNNNNNTCC	2 cut(s)	1830, 1862
AluBI	AGCT	7 cut(s)	42, 54, 721, 1511, 1676, 1748, 1950
AluI	AGCT	7 cut(s)	42, 54, 721, 1511, 1676, 1748, 1950
Alw21I	GWGCWC	3 cut(s)	1253, 1750, 2124
Alw26I	GTCTC	3 cut(s)	366, 831, 1432
AlwI	GGATC	2 cut(s)	429, 2052
AlwNI	CAGNNNCTG	2 cut(s)	45, 1733
AoxI	GGCC	3 cut(s)	232, 1147, 2189
ApeKI	GCWGC	6 cut(s)	39, 718, 1268, 1508, 1733, 1799
ApoI	RAATTY	5 cut(s)	197, 906, 931, 1699, 1858
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
Asp700I	GAANNNNTTC	3 cut(s)	350, 1001, 1596
AspLEI	GCGC	5 cut(s)	6, 228, 1683, 1696, 1760
AsuHPI	GGTGA	3 cut(s)	1006, 1181, 1898
AsuII	TTCGAA	1 cut(s)	1320
BalI	TGGCCA	2 cut(s)	234, 1149
BanI	GGYRCC	1 cut(s)	1680
BanII	GRGCYC	2 cut(s)	436, 1750
BarI	GAAGNNNNNNTAC	2 cut(s)	26, 58
BauI	CACGAG	2 cut(s)	435, 1429
BbsI	GAAGAC	1 cut(s)	2232
Bbv12I	GWGCWC	3 cut(s)	1253, 1750, 2124
BbvCI	CCTCAGC	1 cut(s)	2129
BbvI	GCAGC	6 cut(s)	51, 730, 1255, 1520, 1720, 1786
BccI	CCATC	8 cut(s)	83, 670, 1073, 1130, 1202, 1813, 1875, 2249
BciT130I	CCWGG	2 cut(s)	1685, 1941
BclI	TGATCA	1 cut(s)	768
BcoDI	GTCTC	3 cut(s)	366, 831, 1432
BfaI	CTAG	4 cut(s)	621, 714, 1086, 1224
BfoI	RGCGCY	1 cut(s)	1684
BfrI	CTTAAG	1 cut(s)	2281
BfuAI	ACCTGC	1 cut(s)	1658
BlpI	GCTNAGC	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	1685, 1941
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmiI	GGNNCC	2 cut(s)	1682, 1824
BmrFI	CCNGG	2 cut(s)	1685, 1941
BpiI	GAAGAC	1 cut(s)	2232
Bpu10I	CCTNAGC	1 cut(s)	2129
Bpu1102I	GCTNAGC	1 cut(s)	55
Bpu14I	TTCGAA	1 cut(s)	1320
BpuEI	CTTGAG	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	1681
BsaJI	CCNNGG	2 cut(s)	119, 1109
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 1128, 2011
Bse1I	ACTGG	2 cut(s)	1057, 1573
Bse3DI	GCAATG	7 cut(s)	235, 273, 864, 957, 1017, 1140, 1348
BseBI	CCWGG	2 cut(s)	1685, 1941
BseDI	CCNNGG	2 cut(s)	119, 1109
BseGI	GGATG	8 cut(s)	472, 738, 751, 844, 891, 898, 1379, 1426
BseLI	CCNNNNNNNGG	3 cut(s)	162, 1128, 2011
BseMI	GCAATG	7 cut(s)	235, 273, 864, 957, 1017, 1140, 1348
BseMII	CTCAG	4 cut(s)	69, 357, 1076, 2120
BseNI	ACTGG	2 cut(s)	1057, 1573
BseRI	GAGGAG	3 cut(s)	292, 2123, 2126
BseXI	GCAGC	6 cut(s)	51, 730, 1255, 1520, 1720, 1786
BseYI	CCCAGC	1 cut(s)	1676
BsgI	GTGCAG	2 cut(s)	617, 896
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	3 cut(s)	234, 1149, 2191
BshNI	GGYRCC	1 cut(s)	1680
BsiHKAI	GWGCWC	3 cut(s)	1253, 1750, 2124
BsiSI	CCGG	1 cut(s)	458
BslFI	GGGAC	1 cut(s)	2006
BslI	CCNNNNNNNGG	3 cut(s)	162, 1128, 2011
BsmAI	GTCTC	3 cut(s)	366, 831, 1432
BsmFI	GGGAC	1 cut(s)	2006
BsmI	GAATGC	3 cut(s)	487, 952, 1767
BsnI	GGCC	3 cut(s)	234, 1149, 2191
Bsp119I	TTCGAA	1 cut(s)	1320
Bsp1286I	GDGCHC	4 cut(s)	436, 1253, 1750, 2124
Bsp143I	GATC	5 cut(s)	421, 768, 1443, 1660, 2044
Bsp1720I	GCTNAGC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	119
BspANI	GGCC	3 cut(s)	234, 1149, 2191
BspCNI	CTCAG	4 cut(s)	68, 358, 1075, 2121
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	1682, 1824
BspMI	ACCTGC	1 cut(s)	1658
BspPI	GGATC	2 cut(s)	429, 2052
BspT104I	TTCGAA	1 cut(s)	1320
BspT107I	GGYRCC	1 cut(s)	1680
BspTI	CTTAAG	1 cut(s)	2281
BsrBI	CCGCTC	1 cut(s)	1068
BsrDI	GCAATG	7 cut(s)	235, 273, 864, 957, 1017, 1140, 1348
BsrI	ACTGG	2 cut(s)	1057, 1573
BssECI	CCNNGG	2 cut(s)	119, 1109
BssMI	GATC	5 cut(s)	421, 768, 1443, 1660, 2044
BssNI	GRCGYC	1 cut(s)	1681
BssSI	CACGAG	2 cut(s)	435, 1429
BssT1I	CCWWGG	1 cut(s)	119
Bst2BI	CACGAG	2 cut(s)	435, 1429
Bst2UI	CCWGG	2 cut(s)	1685, 1941
Bst4CI	ACNGT	4 cut(s)	17, 27, 33, 2141
Bst6I	CTCTTC	5 cut(s)	143, 237, 1167, 2031, 2100
BstACI	GRCGYC	1 cut(s)	1681
BstAFI	CTTAAG	1 cut(s)	2281
BstAPI	GCANNNNNTGC	3 cut(s)	45, 956, 1394
BstBI	TTCGAA	1 cut(s)	1320
BstC8I	GCNNGC	6 cut(s)	585, 654, 738, 1106, 1147, 1762
BstDEI	CTNAG	7 cut(s)	55, 366, 398, 639, 1062, 1803, 2129
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	8 cut(s)	472, 738, 751, 844, 891, 898, 1379, 1426
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	1 cut(s)	1684
BstHHI	GCGC	5 cut(s)	6, 228, 1683, 1696, 1760
BstKTI	GATC	5 cut(s)	424, 771, 1446, 1663, 2047
BstMAI	GTCTC	3 cut(s)	366, 831, 1432
BstMBI	GATC	5 cut(s)	421, 768, 1443, 1660, 2044
BstNI	CCWGG	2 cut(s)	1685, 1941
BstNSI	RCATGY	3 cut(s)	1108, 1257, 2128
BstSCI	CCNGG	2 cut(s)	1683, 1939
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	6 cut(s)	51, 730, 1255, 1520, 1720, 1786
BstV2I	GAAGAC	1 cut(s)	2232
BstX2I	RGATCY	2 cut(s)	421, 2044
BstXI	CCANNNNNNTGG	2 cut(s)	120, 2263
BstYI	RGATCY	2 cut(s)	421, 2044
BsuRI	GGCC	3 cut(s)	234, 1149, 2191
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	8 cut(s)	472, 738, 751, 844, 891, 898, 1379, 1426
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	3 cut(s)	663, 2146, 2317
BveI	ACCTGC	1 cut(s)	1658
Cac8I	GCNNGC	6 cut(s)	585, 654, 738, 1106, 1147, 1762
CaiI	CAGNNNCTG	2 cut(s)	45, 1733
CfoI	GCGC	5 cut(s)	6, 228, 1683, 1696, 1760
CseI	GACGC	1 cut(s)	1172
Csp6I	GTAC	4 cut(s)	34, 216, 313, 1360
CviQI	GTAC	4 cut(s)	34, 216, 313, 1360
DdeI	CTNAG	7 cut(s)	55, 366, 398, 639, 1062, 1803, 2129
DinI	GGCGCC	1 cut(s)	1682
DpnI	GATC	5 cut(s)	423, 770, 1445, 1662, 2046
DpnII	GATC	5 cut(s)	421, 768, 1443, 1660, 2044
DriI	GACNNNNNGTC	1 cut(s)	379
EaeI	YGGCCR	2 cut(s)	232, 1147
Eam1104I	CTCTTC	5 cut(s)	143, 237, 1167, 2031, 2100
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	5 cut(s)	143, 237, 1167, 2031, 2100
Ecl136II	GAGCTC	1 cut(s)	1748
Eco130I	CCWWGG	1 cut(s)	119
Eco24I	GRGCYC	2 cut(s)	436, 1750
Eco32I	GATATC	2 cut(s)	306, 567
Eco53kI	GAGCTC	1 cut(s)	1748
Eco57I	CTGAAG	2 cut(s)	1281, 1857
EcoICRI	GAGCTC	1 cut(s)	1748
EcoRII	CCWGG	2 cut(s)	1683, 1939
EcoRV	GATATC	2 cut(s)	306, 567
EcoT14I	CCWWGG	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	1379
EcoT38I	GRGCYC	2 cut(s)	436, 1750
EgeI	GGCGCC	1 cut(s)	1682
EheI	GGCGCC	1 cut(s)	1682
ErhI	CCWWGG	1 cut(s)	119
FaqI	GGGAC	1 cut(s)	2006
FauI	CCCGC	2 cut(s)	2052, 2324
FbaI	TGATCA	1 cut(s)	768
FblI	GTMKAC	1 cut(s)	1229
FokI	GGATG	8 cut(s)	479, 745, 758, 851, 898, 905, 1386, 1433
FriOI	GRGCYC	2 cut(s)	436, 1750
FspBI	CTAG	4 cut(s)	621, 714, 1086, 1224
FspI	TGCGCA	1 cut(s)	227
GlaI	GCGC	5 cut(s)	5, 227, 1682, 1695, 1759
GsaI	CCCAGC	1 cut(s)	1680
HaeII	RGCGCY	1 cut(s)	1684
HaeIII	GGCC	3 cut(s)	234, 1149, 2191
HapII	CCGG	1 cut(s)	458
HgaI	GACGC	1 cut(s)	1172
HhaI	GCGC	5 cut(s)	6, 228, 1683, 1696, 1760
Hin1I	GRCGYC	1 cut(s)	1681
Hin6I	GCGC	5 cut(s)	4, 226, 1681, 1694, 1758
HinP1I	GCGC	5 cut(s)	4, 226, 1681, 1694, 1758
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	3 cut(s)	1006, 1181, 1898
Hpy166II	GTNNAC	3 cut(s)	852, 1230, 1579
Hpy188I	TCNGA	7 cut(s)	181, 187, 276, 802, 1065, 1414, 2049
Hpy188III	TCNNGA	2 cut(s)	1613, 1930
Hpy8I	GTNNAC	3 cut(s)	852, 1230, 1579
Hpy99I	CGWCG	1 cut(s)	2102
HpyAV	CCTTC	5 cut(s)	1498, 1581, 2005, 2038, 2262
HpyCH4III	ACNGT	4 cut(s)	17, 27, 33, 2141
HpyCH4IV	ACGT	3 cut(s)	348, 451, 2100
HpyF3I	CTNAG	7 cut(s)	55, 366, 398, 639, 1062, 1803, 2129
HpySE526I	ACGT	3 cut(s)	348, 451, 2100
Hsp92I	GRCGYC	1 cut(s)	1681
HspAI	GCGC	5 cut(s)	4, 226, 1681, 1694, 1758
KasI	GGCGCC	1 cut(s)	1680
Ksp22I	TGATCA	1 cut(s)	768
Kzo9I	GATC	5 cut(s)	421, 768, 1443, 1660, 2044
LmnI	GCTCC	1 cut(s)	1745
Lsp1109I	GCAGC	6 cut(s)	51, 730, 1255, 1520, 1720, 1786
MaeI	CTAG	4 cut(s)	621, 714, 1086, 1224
MaeII	ACGT	3 cut(s)	348, 451, 2100
MaeIII	GTNAC	3 cut(s)	11, 27, 1531
MalI	GATC	5 cut(s)	423, 770, 1445, 1662, 2046
MbiI	CCGCTC	1 cut(s)	1068
MboI	GATC	5 cut(s)	421, 768, 1443, 1660, 2044
MflI	RGATCY	2 cut(s)	421, 2044
MhlI	GDGCHC	4 cut(s)	436, 1253, 1750, 2124
MlsI	TGGCCA	2 cut(s)	234, 1149
MluNI	TGGCCA	2 cut(s)	234, 1149
Mly113I	GGCGCC	1 cut(s)	1681
MlyI	GAGTC	3 cut(s)	176, 644, 1988
MmeI	TCCRAC	4 cut(s)	204, 254, 870, 2022
Mox20I	TGGCCA	2 cut(s)	234, 1149
Mph1103I	ATGCAT	1 cut(s)	1379
MroXI	GAANNNNTTC	3 cut(s)	350, 1001, 1596
MscI	TGGCCA	2 cut(s)	234, 1149
MseI	TTAA	8 cut(s)	195, 201, 261, 1020, 1049, 1518, 1703, 2282
MslI	CAYNNNNRTG	3 cut(s)	992, 2139, 2310
Msp20I	TGGCCA	2 cut(s)	234, 1149
MspA1I	CMGCKG	1 cut(s)	1511
MspCI	CTTAAG	1 cut(s)	2281
MspI	CCGG	1 cut(s)	458
MspR9I	CCNGG	2 cut(s)	1685, 1941
Mva1269I	GAATGC	3 cut(s)	487, 952, 1767
MvaI	CCWGG	2 cut(s)	1685, 1941
MvnI	CGCG	1 cut(s)	6
NarI	GGCGCC	1 cut(s)	1681
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	5 cut(s)	421, 768, 1443, 1660, 2044
NlaIV	GGNNCC	2 cut(s)	1682, 1824
NmeAIII	GCCGAG	1 cut(s)	1090
NsbI	TGCGCA	1 cut(s)	227
NsiI	ATGCAT	1 cut(s)	1379
NspI	RCATGY	3 cut(s)	1108, 1257, 2128
NspV	TTCGAA	1 cut(s)	1320
PaeI	GCATGC	1 cut(s)	1108
PciI	ACATGT	1 cut(s)	1253
PcsI	WCGNNNNNNNCGW	1 cut(s)	1436
PctI	GAATGC	3 cut(s)	487, 952, 1767
PdmI	GAANNNNTTC	3 cut(s)	350, 1001, 1596
PfeI	GAWTC	7 cut(s)	1118, 1317, 1496, 1609, 1972, 2167, 2288
PflFI	GACNNNGTC	1 cut(s)	1225
PflMI	CCANNNNNTGG	1 cut(s)	1128
PfoI	TCCNGGA	1 cut(s)	1939
PleI	GAGTC	3 cut(s)	176, 643, 1988
PluTI	GGCGCC	1 cut(s)	1684
PpsI	GAGTC	3 cut(s)	176, 643, 1988
PscI	ACATGT	1 cut(s)	1253
Psp124BI	GAGCTC	1 cut(s)	1750
Psp6I	CCWGG	2 cut(s)	1683, 1939
PspFI	CCCAGC	1 cut(s)	1676
PspGI	CCWGG	2 cut(s)	1683, 1939
PspN4I	GGNNCC	2 cut(s)	1682, 1824
PstNI	CAGNNNCTG	2 cut(s)	45, 1733
PsuI	RGATCY	2 cut(s)	421, 2044
PsyI	GACNNNGTC	1 cut(s)	1225
PvuII	CAGCTG	1 cut(s)	1511
RsaI	GTAC	4 cut(s)	35, 217, 314, 1361
RsaNI	GTAC	4 cut(s)	34, 216, 313, 1360
RseI	CAYNNNNRTG	3 cut(s)	992, 2139, 2310
SacI	GAGCTC	1 cut(s)	1750
SaqAI	TTAA	8 cut(s)	195, 201, 261, 1020, 1049, 1518, 1703, 2282
Sau3AI	GATC	5 cut(s)	421, 768, 1443, 1660, 2044
SchI	GAGTC	3 cut(s)	176, 644, 1988
ScrFI	CCNGG	2 cut(s)	1685, 1941
SduI	GDGCHC	4 cut(s)	436, 1253, 1750, 2124
SfoI	GGCGCC	1 cut(s)	1682
SfuI	TTCGAA	1 cut(s)	1320
SmiMI	CAYNNNNRTG	3 cut(s)	992, 2139, 2310
SmlI	CTYRAG	2 cut(s)	49, 2281
SmoI	CTYRAG	2 cut(s)	49, 2281
SphI	GCATGC	1 cut(s)	1108
SspDI	GGCGCC	1 cut(s)	1680
SspMI	CTAG	4 cut(s)	621, 714, 1086, 1224
SstI	GAGCTC	1 cut(s)	1750
StyD4I	CCNGG	2 cut(s)	1683, 1939
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	4 cut(s)	17, 27, 33, 2141
TaiI	ACGT	3 cut(s)	351, 454, 2103
TaqI	TCGA	6 cut(s)	78, 354, 726, 1005, 1320, 1494
TatI	WGTACW	1 cut(s)	1359
TauI	GCSGC	4 cut(s)	590, 1071, 1136, 1767
TfiI	GAWTC	7 cut(s)	1118, 1317, 1496, 1609, 1972, 2167, 2288
Tru1I	TTAA	8 cut(s)	195, 201, 261, 1020, 1049, 1518, 1703, 2282
Tru9I	TTAA	8 cut(s)	195, 201, 261, 1020, 1049, 1518, 1703, 2282
TscAI	CASTG	3 cut(s)	663, 2146, 2317
TseI	GCWGC	6 cut(s)	39, 718, 1268, 1508, 1733, 1799
TspGWI	ACGGA	1 cut(s)	2186
TspRI	CASTG	3 cut(s)	663, 2146, 2317
Tth111I	GACNNNGTC	1 cut(s)	1225
Van91I	CCANNNNNTGG	1 cut(s)	1128
Vha464I	CTTAAG	1 cut(s)	2281
XapI	RAATTY	5 cut(s)	197, 906, 931, 1699, 1858
XceI	RCATGY	3 cut(s)	1108, 1257, 2128
XcmI	CCANNNNNNNNNTGG	2 cut(s)	227, 1157
XmiI	GTMKAC	1 cut(s)	1229
XmnI	GAANNNNTTC	3 cut(s)	350, 1001, 1596
XspI	CTAG	4 cut(s)	621, 714, 1086, 1224
Zsp2I	ATGCAT	1 cut(s)	1379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.