RchiOBHm_Chr7g0178631

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013837
Physical Location & Seq
Reverse (-)
1239389 .. 1242283
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15919

Sequence Viewer

Length: 2346 bp
ATGCGCGGGAGTTACCGTTTGACACAGTTACAGTACCGCAGCTTCTGCTCAAGCTCAGCCAAAGCCCAGAAACCCATTAACGTCAGTTTTGGAAACCCCACTAACCCAAACCCAATCCCATGGAAGAAAACAAAGACCCAGAAGCAGAAGAGTTCCCTGAATAGGTTATCAAATGCTTCCGACTCGGAAGTTGTTAAATTTAACATGGAAATCAGTACCCAAATGCGCAATGGCCAATGCGAAGAGGCTCTGCGTGTGTTTAATGCAATGGGTCGGAGGAGTTCGGTTTCTTACAATGCCATGATATCTGGGTACTTGGCAAATGGGAAGTTTGATGATGCAAAGAACGTGTTCGACAAAATGCCTGAGAGAGACTTGGTGTCTTGGAATGTGATGCTTAGTGGGTATGTGAGGAATAGGGATCTTGGTGGGGCTCGAGCTTTGTTTGAACGTATGCCGGAAAAGGATGTTGTTTCATGGAATGCCATTTTATCTGGCTATGCCCAGAATGGTTATGTTGATGAGGCGAGGAAGGTTTTTGAAATGATGCCGAAAAAGAATGAGATATCTTGGAATGGGTTGCTTGCGGCTTATGTGCAGAATGGGAGGATAGAAAGTGCTAGGAGGTTGTTTGAGTCGAAGGCAGATTGGCAAGCAGTGTCTTGGAATTGTTTGATGGGGGGATTTGTGAAACAAAAGAGATTAGTTGATGCTAGGCAGCTTTTCGACAGGATGCCTGCGAGGGATGAAGTTTCGTGGAACACTATGATCACAGGGTATGCACAGAATGGGGGAATGTCAGAAGCAAGGACATTGTTTGACAAGTCTCCTGTAAGGGATGTGTTTGCGTGGACAGCAATGCTTTCGGGTTATGTGCAGAATGGGATGTTGGATGAAGCAAGACGAATTTTTGATGAAATGCCAGAGAAGAATTCGGTTTCGTGGAATGCAATGATTGCAGGGTATGTGCAAGACAAGAGAATGGACATGGCGGTGAAATCGTTCGAGGCAATGCCTTTTAAGAATGTGAGTTCTTGGAATACCATTTTAACTGGCTATGCTCAGAGCGGCGATATTGATGGTGCTAGGAAAGTCTTTGATAGCATGCCTCGGCGTGATTCCATCTCTTGGGCGGCTATCATTGCTGGCCATGCTCAAAATGGTTTCGGTGAAGAGGCTTTGCGTCTATTTGTGGAGATGAAAAGAGATGGGGAACGACTGACTAGGTCTACATTTTCTTGTGCTTTGAGCACATGTGCTGAAGTTGCTGCTTTAGAGTTGGGGAAGCAATTACATGGGCGTTTAGCAAAAGCAGGATTCGAAAGTGGGTGCTATGTGGGCAATGCACTCCTTGTGATGTACTGCAAGTGTGGATGCATAGAGGAAGCATACGATGCGTTCCAAGAAATATCTGAAAAGGATGTTGTCTCGTGGAACACGATGATCTATGGTTATGCAAGGCATGGATTTGGCTCAAAGGCTCTCATGGTTTTCGATTCAATGAAGGCAGCTGGTATTAAACCTGATGAAGTAACAATGGTGGGTGTATTGTCTGCTTGTAGTCATACTGGCTTTGTGGACAGGGGAAGGGAATACTTTCATTCAATGAATCGGGAGTATGGCATCACAGCAAATGCAAAACACTATACCTGCCTGATTGATCTTTTAGGTAGAGCTGGGCGCCTGGAAGAAGCGCAGAATTTAATGAGAACAATGCCTTTTGAACCAGATGCTGCAACATGGGGAGCTCTACTTGGCGCAAGCCGCATTCATGGCAATACTGAATTAGGAGAAAAGGCTGCTAAGATAATTTTTGAGATGGAACCTGAAAATGCAGGAATGTATGTTCTTCTCTCAAATTTATATGCTTCTTCAGGCAGATGGGGTGATGTTGGTAAAATGAGATTGAAAATGAGAGATAAAGGTGTCAGGAAAGTTCCTGGATATAGCTGGATTGAAGTGCAAAACAAGATTCACACATTTTCAGTTGGGGACTCTATACACCCAGAGAAGGACAATATATATGCCTTCTTGGAAGAGTTGGATCTGAAAATGAAGCGGGAGGGATATGTTTCATCTACAAAGTTGGTTTTGCACGATGTTGAAGAGGAGGAGAAAGAGCATATGCTGAGGCATCACAGTGAGAAATTGGCTGTGGCATTTGGGATTCTTTCAATTCCAGCAGGGAGGCCAATCCGTGTAATGAAGAACTTGCGAGTATGTGAAGACTGCCACAATGCCATCAAATACATATCCAAGATTGTGGGAAGGACAATAATCTTAAGGGATTCTAACCGCTTCCACCACTTCAGTGAGGGTTCTTGTTCTTGCGGGGATTATTGGTGA

Protein Analysis

781

Amino Acids

88.04

Weight (kDa)

8.78

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 94 - 124 1.7e-07 PPR repeat family
PPR PF01535 96 - 125 4.1e-08 PPR repeat
PPR PF01535 127 - 156 1.7e-06 PPR repeat
PPR_2 PF13041 155 - 187 9.4e-08 PPR repeat family
PPR_1 PF12854 156 - 183 2e-06 PPR repeat
PPR PF01535 158 - 187 4.1e-08 PPR repeat
PPR_2 PF13041 279 - 311 6.1e-07 PPR repeat family
PPR PF01535 283 - 311 1.3e-08 PPR repeat
PPR_2 PF13041 310 - 343 4e-06 PPR repeat family
PPR_2 PF13041 341 - 372 4.1e-06 PPR repeat family
PPR PF01535 345 - 372 5e-06 PPR repeat
PPR_2 PF13041 373 - 420 1.7e-06 PPR repeat family
PPR PF01535 375 - 404 9.2e-06 PPR repeat
PPR_2 PF13041 473 - 521 5e-12 PPR repeat family
PPR PF01535 476 - 506 2.9e-08 PPR repeat
E_motif PF20431 591 - 653 5.4e-22 E motif
DYW_deaminase PF14432 689 - 781 3.8e-43 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013837)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02750
fragaria_vesca FvH4_5g17170 FvH4_5g17170 FvH4_5g17170
malus_domestica MD06G1230200.v1.1
prunus_persica Prupe.5G231300_v2.0.a1
pyrus_communis pycom06g20140
rosa_chinensis RchiOBHm_Chr7g0178631
rosa_laevigata RLG00000005428
rosa_multiflora Rmu_sc0002320.1_g000006
rosa_rugosa Rorug06G0418500 Rorug06G0418600 Rorug07G0253600
rosa_samantha Rh7AG017300 Rh7BG016900 Rh7DG017500
rosa_wichuraiana Rw7G001400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 1658
AccB1I GGYRCC 1 cut(s) 1680
AccB7I CCANNNNNTGG 1 cut(s) 1128
AccBSI CCGCTC 1 cut(s) 1068
AccI GTMKAC 1 cut(s) 1229
AccII CGCG 1 cut(s) 6
AclWI GGATC 2 cut(s) 429, 2052
AcoI YGGCCR 2 cut(s) 232, 1147
AcsI RAATTY 5 cut(s) 197, 906, 931, 1699, 1858
AcuI CTGAAG 3 cut(s) 1281, 1857, 2293
AcyI GRCGYC 1 cut(s) 1681
AfaI GTAC 4 cut(s) 35, 217, 314, 1361
AfiI CCNNNNNNNGG 3 cut(s) 162, 1128, 2011
AflII CTTAAG 1 cut(s) 2281
AflIII ACRYGT 2 cut(s) 348, 1253
AgsI TTSAA 9 cut(s) 449, 542, 1500, 1605, 1724, 1909, 1958, 2105, 2175
AhdI GACNNNNNGTC 1 cut(s) 379
AjnI CCWGG 2 cut(s) 1683, 1939
AjuI GAANNNNNNNTTGG 2 cut(s) 872, 904
AleI CACNNNNGTG 1 cut(s) 2310
AloI GAACNNNNNNTCC 2 cut(s) 1830, 1862
AluBI AGCT 8 cut(s) 42, 54, 440, 721, 1511, 1676, 1748, 1950
AluI AGCT 8 cut(s) 42, 54, 440, 721, 1511, 1676, 1748, 1950
Alw21I GWGCWC 2 cut(s) 1253, 1750
Alw26I GTCTC 3 cut(s) 366, 831, 1432
AlwI GGATC 2 cut(s) 429, 2052
AlwNI CAGNNNCTG 2 cut(s) 45, 1733
Ama87I CYCGRG 1 cut(s) 435
AoxI GGCC 3 cut(s) 232, 1147, 2189
ApeKI GCWGC 6 cut(s) 39, 718, 1268, 1508, 1733, 1799
ApoI RAATTY 5 cut(s) 197, 906, 931, 1699, 1858
Asp700I GAANNNNTTC 3 cut(s) 350, 1001, 1596
AspLEI GCGC 5 cut(s) 6, 228, 1683, 1696, 1760
AsuHPI GGTGA 3 cut(s) 1006, 1181, 1898
AsuII TTCGAA 1 cut(s) 1320
AvaI CYCGRG 1 cut(s) 435
BalI TGGCCA 2 cut(s) 234, 1149
BanI GGYRCC 1 cut(s) 1680
BanII GRGCYC 2 cut(s) 436, 1750
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BauI CACGAG 1 cut(s) 1429
BbsI GAAGAC 1 cut(s) 2232
Bbv12I GWGCWC 2 cut(s) 1253, 1750
BbvCI CCTCAGC 1 cut(s) 2129
BbvI GCAGC 6 cut(s) 51, 730, 1255, 1520, 1720, 1786
BccI CCATC 7 cut(s) 670, 1073, 1130, 1202, 1813, 1875, 2249
BcgI CGANNNNNNTGC 2 cut(s) 846, 880
BciT130I CCWGG 2 cut(s) 1685, 1941
BclI TGATCA 1 cut(s) 768
BcoDI GTCTC 3 cut(s) 366, 831, 1432
BfaI CTAG 4 cut(s) 621, 714, 1086, 1224
BfoI RGCGCY 1 cut(s) 1684
BfrI CTTAAG 1 cut(s) 2281
BfuAI ACCTGC 1 cut(s) 1658
BlpI GCTNAGC 1 cut(s) 55
Bme1390I CCNGG 2 cut(s) 1685, 1941
BmeRI GACNNNNNGTC 1 cut(s) 379
BmeT110I CYCGRG 1 cut(s) 435
BmiI GGNNCC 2 cut(s) 1682, 1824
BmrFI CCNGG 2 cut(s) 1685, 1941
BpiI GAAGAC 1 cut(s) 2232
Bpu10I CCTNAGC 1 cut(s) 2129
Bpu1102I GCTNAGC 1 cut(s) 55
Bpu14I TTCGAA 1 cut(s) 1320
BpuEI CTTGAG 1 cut(s) 34
BsaHI GRCGYC 1 cut(s) 1681
BsaJI CCNNGG 2 cut(s) 119, 1109
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 1128, 2011
Bse1I ACTGG 2 cut(s) 1057, 1573
Bse3DI GCAATG 7 cut(s) 235, 273, 864, 957, 1017, 1140, 1348
BseBI CCWGG 2 cut(s) 1685, 1941
BseDI CCNNGG 2 cut(s) 119, 1109
BseGI GGATG 8 cut(s) 472, 738, 751, 844, 891, 898, 1379, 1426
BseLI CCNNNNNNNGG 3 cut(s) 162, 1128, 2011
BseMI GCAATG 7 cut(s) 235, 273, 864, 957, 1017, 1140, 1348
BseMII CTCAG 4 cut(s) 69, 357, 1076, 2120
BseNI ACTGG 2 cut(s) 1057, 1573
BseRI GAGGAG 3 cut(s) 292, 2123, 2126
BseXI GCAGC 6 cut(s) 51, 730, 1255, 1520, 1720, 1786
BseYI CCCAGC 1 cut(s) 1676
BsgI GTGCAG 2 cut(s) 617, 896
Bsh1236I CGCG 1 cut(s) 6
BshFI GGCC 3 cut(s) 234, 1149, 2191
BshNI GGYRCC 1 cut(s) 1680
BsiHKAI GWGCWC 2 cut(s) 1253, 1750
BsiHKCI CYCGRG 1 cut(s) 435
BsiSI CCGG 1 cut(s) 458
BslFI GGGAC 1 cut(s) 2006
BslI CCNNNNNNNGG 3 cut(s) 162, 1128, 2011
BsmAI GTCTC 3 cut(s) 366, 831, 1432
BsmFI GGGAC 1 cut(s) 2006
BsmI GAATGC 3 cut(s) 487, 952, 1767
BsnI GGCC 3 cut(s) 234, 1149, 2191
BsoBI CYCGRG 1 cut(s) 435
Bsp119I TTCGAA 1 cut(s) 1320
Bsp1286I GDGCHC 3 cut(s) 436, 1253, 1750
Bsp143I GATC 5 cut(s) 421, 768, 1443, 1660, 2044
Bsp1720I GCTNAGC 1 cut(s) 55
Bsp19I CCATGG 1 cut(s) 119
BspANI GGCC 3 cut(s) 234, 1149, 2191
BspCNI CTCAG 4 cut(s) 68, 358, 1075, 2121
BspFNI CGCG 1 cut(s) 6
BspLI GGNNCC 2 cut(s) 1682, 1824
BspMI ACCTGC 1 cut(s) 1658
BspPI GGATC 2 cut(s) 429, 2052
BspT104I TTCGAA 1 cut(s) 1320
BspT107I GGYRCC 1 cut(s) 1680
BspTI CTTAAG 1 cut(s) 2281
BsrBI CCGCTC 1 cut(s) 1068
BsrDI GCAATG 7 cut(s) 235, 273, 864, 957, 1017, 1140, 1348
BsrI ACTGG 2 cut(s) 1057, 1573
BssECI CCNNGG 2 cut(s) 119, 1109
BssMI GATC 5 cut(s) 421, 768, 1443, 1660, 2044
BssNI GRCGYC 1 cut(s) 1681
BssSI CACGAG 1 cut(s) 1429
BssT1I CCWWGG 1 cut(s) 119
Bst2BI CACGAG 1 cut(s) 1429
Bst2UI CCWGG 2 cut(s) 1685, 1941
Bst4CI ACNGT 4 cut(s) 17, 27, 33, 2141
Bst6I CTCTTC 5 cut(s) 143, 237, 1167, 2031, 2100
BstACI GRCGYC 1 cut(s) 1681
BstAFI CTTAAG 1 cut(s) 2281
BstAPI GCANNNNNTGC 3 cut(s) 45, 956, 1394
BstBI TTCGAA 1 cut(s) 1320
BstC8I GCNNGC 6 cut(s) 585, 654, 738, 1106, 1147, 1762
BstDEI CTNAG 6 cut(s) 55, 366, 398, 1062, 1803, 2129
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 8 cut(s) 472, 738, 751, 844, 891, 898, 1379, 1426
BstFNI CGCG 1 cut(s) 6
BstH2I RGCGCY 1 cut(s) 1684
BstHHI GCGC 5 cut(s) 6, 228, 1683, 1696, 1760
BstKTI GATC 5 cut(s) 424, 771, 1446, 1663, 2047
BstMAI GTCTC 3 cut(s) 366, 831, 1432
BstMBI GATC 5 cut(s) 421, 768, 1443, 1660, 2044
BstNI CCWGG 2 cut(s) 1685, 1941
BstNSI RCATGY 2 cut(s) 1108, 1257
BstSCI CCNGG 2 cut(s) 1683, 1939
BstUI CGCG 1 cut(s) 6
BstV1I GCAGC 6 cut(s) 51, 730, 1255, 1520, 1720, 1786
BstV2I GAAGAC 1 cut(s) 2232
BstX2I RGATCY 2 cut(s) 421, 2044
BstXI CCANNNNNNTGG 2 cut(s) 120, 2263
BstYI RGATCY 2 cut(s) 421, 2044
BsuRI GGCC 3 cut(s) 234, 1149, 2191
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 8 cut(s) 472, 738, 751, 844, 891, 898, 1379, 1426
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 3 cut(s) 663, 2146, 2317
BveI ACCTGC 1 cut(s) 1658
Cac8I GCNNGC 6 cut(s) 585, 654, 738, 1106, 1147, 1762
CaiI CAGNNNCTG 2 cut(s) 45, 1733
CfoI GCGC 5 cut(s) 6, 228, 1683, 1696, 1760
CseI GACGC 1 cut(s) 1172
Csp6I GTAC 4 cut(s) 34, 216, 313, 1360
CviQI GTAC 4 cut(s) 34, 216, 313, 1360
DdeI CTNAG 6 cut(s) 55, 366, 398, 1062, 1803, 2129
DinI GGCGCC 1 cut(s) 1682
DpnI GATC 5 cut(s) 423, 770, 1445, 1662, 2046
DpnII GATC 5 cut(s) 421, 768, 1443, 1660, 2044
DriI GACNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 2 cut(s) 232, 1147
Eam1104I CTCTTC 5 cut(s) 143, 237, 1167, 2031, 2100
Eam1105I GACNNNNNGTC 1 cut(s) 379
EarI CTCTTC 5 cut(s) 143, 237, 1167, 2031, 2100
Ecl136II GAGCTC 1 cut(s) 1748
Eco130I CCWWGG 1 cut(s) 119
Eco24I GRGCYC 2 cut(s) 436, 1750
Eco32I GATATC 2 cut(s) 306, 567
Eco53kI GAGCTC 1 cut(s) 1748
Eco57I CTGAAG 3 cut(s) 1281, 1857, 2293
Eco88I CYCGRG 1 cut(s) 435
EcoICRI GAGCTC 1 cut(s) 1748
EcoRI GAATTC 1 cut(s) 931
EcoRII CCWGG 2 cut(s) 1683, 1939
EcoRV GATATC 2 cut(s) 306, 567
EcoT14I CCWWGG 1 cut(s) 119
EcoT22I ATGCAT 1 cut(s) 1379
EcoT38I GRGCYC 2 cut(s) 436, 1750
EgeI GGCGCC 1 cut(s) 1682
EheI GGCGCC 1 cut(s) 1682
ErhI CCWWGG 1 cut(s) 119
FaqI GGGAC 1 cut(s) 2006
FauI CCCGC 2 cut(s) 2052, 2324
FauNDI CATATG 1 cut(s) 2124
FbaI TGATCA 1 cut(s) 768
FblI GTMKAC 1 cut(s) 1229
FokI GGATG 8 cut(s) 479, 745, 758, 851, 898, 905, 1386, 1433
FriOI GRGCYC 2 cut(s) 436, 1750
FspBI CTAG 4 cut(s) 621, 714, 1086, 1224
FspI TGCGCA 1 cut(s) 227
GlaI GCGC 5 cut(s) 5, 227, 1682, 1695, 1759
GsaI CCCAGC 1 cut(s) 1680
HaeII RGCGCY 1 cut(s) 1684
HaeIII GGCC 3 cut(s) 234, 1149, 2191
HapII CCGG 1 cut(s) 458
HgaI GACGC 1 cut(s) 1172
HhaI GCGC 5 cut(s) 6, 228, 1683, 1696, 1760
Hin1I GRCGYC 1 cut(s) 1681
Hin6I GCGC 5 cut(s) 4, 226, 1681, 1694, 1758
HinP1I GCGC 5 cut(s) 4, 226, 1681, 1694, 1758
HpaII CCGG 1 cut(s) 458
HphI GGTGA 3 cut(s) 1006, 1181, 1898
Hpy166II GTNNAC 3 cut(s) 852, 1230, 1579
Hpy188I TCNGA 7 cut(s) 181, 187, 276, 802, 1065, 1414, 2049
Hpy188III TCNNGA 2 cut(s) 1613, 1930
Hpy8I GTNNAC 3 cut(s) 852, 1230, 1579
HpyAV CCTTC 7 cut(s) 526, 634, 1498, 1581, 2005, 2038, 2262
HpyCH4III ACNGT 4 cut(s) 17, 27, 33, 2141
HpyCH4IV ACGT 3 cut(s) 81, 348, 451
HpyF3I CTNAG 6 cut(s) 55, 366, 398, 1062, 1803, 2129
HpySE526I ACGT 3 cut(s) 81, 348, 451
Hsp92I GRCGYC 1 cut(s) 1681
HspAI GCGC 5 cut(s) 4, 226, 1681, 1694, 1758
KasI GGCGCC 1 cut(s) 1680
Ksp22I TGATCA 1 cut(s) 768
Kzo9I GATC 5 cut(s) 421, 768, 1443, 1660, 2044
LmnI GCTCC 1 cut(s) 1745
Lsp1109I GCAGC 6 cut(s) 51, 730, 1255, 1520, 1720, 1786
MaeI CTAG 4 cut(s) 621, 714, 1086, 1224
MaeII ACGT 3 cut(s) 81, 348, 451
MaeIII GTNAC 3 cut(s) 11, 27, 1531
MalI GATC 5 cut(s) 423, 770, 1445, 1662, 2046
MbiI CCGCTC 1 cut(s) 1068
MboI GATC 5 cut(s) 421, 768, 1443, 1660, 2044
MflI RGATCY 2 cut(s) 421, 2044
MhlI GDGCHC 3 cut(s) 436, 1253, 1750
MlsI TGGCCA 2 cut(s) 234, 1149
MluNI TGGCCA 2 cut(s) 234, 1149
Mly113I GGCGCC 1 cut(s) 1681
MlyI GAGTC 3 cut(s) 176, 644, 1988
MmeI TCCRAC 4 cut(s) 204, 254, 870, 2022
Mox20I TGGCCA 2 cut(s) 234, 1149
Mph1103I ATGCAT 1 cut(s) 1379
MroXI GAANNNNTTC 3 cut(s) 350, 1001, 1596
MscI TGGCCA 2 cut(s) 234, 1149
MseI TTAA 9 cut(s) 78, 195, 201, 261, 1020, 1049, 1518, 1703, 2282
MslI CAYNNNNRTG 3 cut(s) 992, 2139, 2310
Msp20I TGGCCA 2 cut(s) 234, 1149
MspA1I CMGCKG 1 cut(s) 1511
MspCI CTTAAG 1 cut(s) 2281
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 2 cut(s) 1685, 1941
Mva1269I GAATGC 3 cut(s) 487, 952, 1767
MvaI CCWGG 2 cut(s) 1685, 1941
MvnI CGCG 1 cut(s) 6
NarI GGCGCC 1 cut(s) 1681
NcoI CCATGG 1 cut(s) 119
NdeI CATATG 1 cut(s) 2124
NdeII GATC 5 cut(s) 421, 768, 1443, 1660, 2044
NlaIV GGNNCC 2 cut(s) 1682, 1824
NmeAIII GCCGAG 1 cut(s) 1090
NsbI TGCGCA 1 cut(s) 227
NsiI ATGCAT 1 cut(s) 1379
NspI RCATGY 2 cut(s) 1108, 1257
NspV TTCGAA 1 cut(s) 1320
OliI CACNNNNGTG 1 cut(s) 2310
PaeI GCATGC 1 cut(s) 1108
PaeR7I CTCGAG 1 cut(s) 435
PciI ACATGT 1 cut(s) 1253
PcsI WCGNNNNNNNCGW 1 cut(s) 1436
PctI GAATGC 3 cut(s) 487, 952, 1767
PdmI GAANNNNTTC 3 cut(s) 350, 1001, 1596
PfeI GAWTC 7 cut(s) 1118, 1317, 1496, 1609, 1972, 2167, 2288
PflFI GACNNNGTC 1 cut(s) 1225
PflMI CCANNNNNTGG 1 cut(s) 1128
PfoI TCCNGGA 1 cut(s) 1939
PleI GAGTC 3 cut(s) 176, 643, 1988
PluTI GGCGCC 1 cut(s) 1684
PpsI GAGTC 3 cut(s) 176, 643, 1988
PscI ACATGT 1 cut(s) 1253
Psp124BI GAGCTC 1 cut(s) 1750
Psp6I CCWGG 2 cut(s) 1683, 1939
PspFI CCCAGC 1 cut(s) 1676
PspGI CCWGG 2 cut(s) 1683, 1939
PspN4I GGNNCC 2 cut(s) 1682, 1824
PspXI VCTCGAGB 1 cut(s) 435
PstNI CAGNNNCTG 2 cut(s) 45, 1733
PsuI RGATCY 2 cut(s) 421, 2044
PsyI GACNNNGTC 1 cut(s) 1225
PvuII CAGCTG 1 cut(s) 1511
RsaI GTAC 4 cut(s) 35, 217, 314, 1361
RsaNI GTAC 4 cut(s) 34, 216, 313, 1360
RseI CAYNNNNRTG 3 cut(s) 992, 2139, 2310
SacI GAGCTC 1 cut(s) 1750
SaqAI TTAA 9 cut(s) 78, 195, 201, 261, 1020, 1049, 1518, 1703, 2282
Sau3AI GATC 5 cut(s) 421, 768, 1443, 1660, 2044
SchI GAGTC 3 cut(s) 176, 644, 1988
ScrFI CCNGG 2 cut(s) 1685, 1941
SduI GDGCHC 3 cut(s) 436, 1253, 1750
SfoI GGCGCC 1 cut(s) 1682
Sfr274I CTCGAG 1 cut(s) 435
SfuI TTCGAA 1 cut(s) 1320
SlaI CTCGAG 1 cut(s) 435
SmiMI CAYNNNNRTG 3 cut(s) 992, 2139, 2310
SmlI CTYRAG 3 cut(s) 49, 435, 2281
SmoI CTYRAG 3 cut(s) 49, 435, 2281
SphI GCATGC 1 cut(s) 1108
SspDI GGCGCC 1 cut(s) 1680
SspMI CTAG 4 cut(s) 621, 714, 1086, 1224
SstI GAGCTC 1 cut(s) 1750
StyD4I CCNGG 2 cut(s) 1683, 1939
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 4 cut(s) 17, 27, 33, 2141
TaiI ACGT 3 cut(s) 84, 351, 454
TaqI TCGA 7 cut(s) 354, 436, 638, 726, 1005, 1320, 1494
TatI WGTACW 1 cut(s) 1359
TauI GCSGC 4 cut(s) 590, 1071, 1136, 1767
TfiI GAWTC 7 cut(s) 1118, 1317, 1496, 1609, 1972, 2167, 2288
Tru1I TTAA 9 cut(s) 78, 195, 201, 261, 1020, 1049, 1518, 1703, 2282
Tru9I TTAA 9 cut(s) 78, 195, 201, 261, 1020, 1049, 1518, 1703, 2282
TscAI CASTG 3 cut(s) 663, 2146, 2317
TseI GCWGC 6 cut(s) 39, 718, 1268, 1508, 1733, 1799
TspGWI ACGGA 1 cut(s) 2186
TspRI CASTG 3 cut(s) 663, 2146, 2317
Tth111I GACNNNGTC 1 cut(s) 1225
Van91I CCANNNNNTGG 1 cut(s) 1128
Vha464I CTTAAG 1 cut(s) 2281
XapI RAATTY 5 cut(s) 197, 906, 931, 1699, 1858
XceI RCATGY 2 cut(s) 1108, 1257
XcmI CCANNNNNNNNNTGG 2 cut(s) 227, 1157
XhoI CTCGAG 1 cut(s) 435
XmiI GTMKAC 1 cut(s) 1229
XmnI GAANNNNTTC 3 cut(s) 350, 1001, 1596
XspI CTAG 4 cut(s) 621, 714, 1086, 1224
Zsp2I ATGCAT 1 cut(s) 1379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.