Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013837

Physical Location & Seq

Genomic Coordinates Reverse (-)

1145202 .. 1147676

Gene Structure 2475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G001400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2310 bp

ATGCGCGGGAGTTACCGTTTGACACAGTTACAGTACCGCAGCTTCTGCTCAAGCTCAGCCAAAGCCCAGAAACCCATCGACATCAGTTTTGGAAACCCCACTAACCCAAACCCAATCCCATGGAAGAAATCAAAGACCCAGAAGCAGAAGAGTTCCCTGAATAGGTTATCAAATGCTTCCGACTCGGAAGTTGTTAAATTTAACATGGAAATCAGTACCCAAATGCGCAATGGCCAATGCGAAGAGGCTCTGCGTGTGTTTAATGCAATGGGTCGGAGGAGTTCGGTTTCTTACAATGCTATGATATCTGGGTACTTGGCAAATGGGAAGTTTGGTGATGCAAAGAACGTGTTCGACAAAATGCCTGAGAGAGACTTGGTGTCTTGGAATGTGATGCTTAGTGGGTATGTGAGGAACAGGGATCTTGGTGGGGCTCGTGCTTTGTTTGAACGTATGCCGGAAAAGGATGTTGTTTCATGGAATGCCATTTTATCTGGCTATGCCCAGAATGGTTACGTTGATGAGGCGAGGAATGTTTTTGAAATGATGCCGAAAAAGAATGAGATATCTTGGAATGGGTTGCTTGCGGCTTATGTGCAGAATGGGAGGATAGAAAGTGCTAGGAGGTTGTTTGAGTCTAAGGCAGATTGGCAAGCAGTGTCTTGGAATTGTTTGATGGGGGGATTTGTGAAACAAAAGAGATTAGTTGATGCTAGGCAGCTTTTCGACAGGATGCCCTGGTATGCACAGAATGGGGGAATGTCAGAAGCAAGGAGATTGTTTGAGAAGTCTCCTGTAAGGGATGTGTTTGCGTGGACAGCAATGCTCTCGGGTTATGTGCAGAATGGGATGTTGGATGAAGCAAGACGAATTTTTGATGAAATGACAGAGAAGAATTCGGTTTCGTGGAATGCAATGATTGCAGGGTATGTGCAAGACAAGAGAATGGACATGGCGGTGAAATTGTTCGAGGCAATGCCTTTTAAGAATGTGAGTTCTTGGAATACCATTTTAACTGGCTATGCTCAGAGCGGCGATATTGATGGTGCTAGGAAAGTCTTTGATAGCATGCCTCGGCGTGATTCCATCTCTTGGGCGGCTATCATTGCTGGCCATGCTCAAAATGGTTTCGGTGAAGAGGCTTTGCGTCTATTTGTGGAGATGAAAAGAGATGGGGAACGACTGACTAGGTCTACATTTTCTTGTGCTTTGAGCACATGTGCTGAAGTTGCTGCTTTAGAGTTGGGGAAGCAATTACATGGGCGTTTAGCAAAAGCAGGATTCGAAAGTGGGTGCTATGTGGGCAATGCACTCCTTGTGATGTACTGCAAGTGTGGATGCATAGAGGAAGCATACGATGCGTTCCAAGAAATATCTGAAAAGGATGTTGTCTCGTGGAACACGATGATCTATGGTTATGCAAGGCATGGATTTGGCTCAAAGGCTCTCATGGTTTTCGATTCAATGAAGGCAGCTCGTATTAAACCTGATGAAGTAACAATGGTGGGTGTATTGTCTGCTTGTAGTCATACTGGCTTTGTGGACAGGGGAAGGGAATACTTTCATTCAATGAATCGGGAGTATGGCATCACAGCAAATGCAAAACACTATACCTGCCTGATTGATCTTTTAGGTAGAGCTGGGCGCCTGGAAGAAGCGCAGAATTTAATGAGAACGATGCCTTTTGAACCAGATGCTGCAACATGGGGAGCTCTACTTGGTGCAAGCCGCATTCATGGCAATACTGAATTAGGAGAAAAGGCTGCTAAGATAATTTTTGAGATGGAACCTGAAAATGCAGGAATGTATGTTCTTCTCTCAAATTTATATGCTTCTTCAGGCAGATGGGGTGATGTTGGTAAAATGAGATTGAAAATGAGAGATAAAGGTGTCAGGAAAGTTCCTGGATATAGCTGGATTGAAGTGCAAAACAAGATTCACACATTTTCAGTTGGGGACTCTATACACCCAGAGAAGGACAATATATATGCCTTCTTGGAAGAGTTGGATCTGAAAATGAAGCGGGAGGGATATGTTTCATCTACAAAGTTGGTTTTGCACGACGTTGAAGAGGAGGAGAAAGAGCACATGCTGAGGCATCACAGTGAGAAATTGGCTGTGGCATTTGGGATTCTTTCAATTCCAGCAGGGAGGCCAATCCGTGTAATGAAGAACTTGCGAGTATGTGAAGACTGCCACAACGCCATCAAATACATATCCAAGATTGTGGGAAGGACAATAATCTTAAGGGATTCTAACCGCTTCCACCACTTCAGTGAGGGTTCTTGTTCTTGCGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

769

Amino Acids

86.89

Weight (kDa)

8.89

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	94 - 124	9.7e-07	PPR repeat family
PPR	PF01535	96 - 125	3.5e-07	PPR repeat
PPR	PF01535	127 - 156	1.6e-06	PPR repeat
PPR_2	PF13041	155 - 187	2.8e-07	PPR repeat family
PPR_1	PF12854	156 - 183	7.5e-06	PPR repeat
PPR	PF01535	158 - 187	1.3e-07	PPR repeat
PPR_2	PF13041	267 - 299	5.1e-07	PPR repeat family
PPR	PF01535	271 - 299	1.3e-08	PPR repeat
PPR_2	PF13041	298 - 331	1.4e-07	PPR repeat family
PPR	PF01535	301 - 329	1.5e-06	PPR repeat
PPR_2	PF13041	329 - 360	4e-06	PPR repeat family
PPR	PF01535	333 - 360	5e-06	PPR repeat
PPR_2	PF13041	361 - 408	1.6e-06	PPR repeat family
PPR	PF01535	363 - 392	9.1e-06	PPR repeat
PPR_2	PF13041	461 - 509	4.1e-11	PPR repeat family
PPR	PF01535	464 - 492	1.3e-07	PPR repeat
E_motif	PF20431	579 - 641	5.3e-22	E motif
DYW_deaminase	PF14432	677 - 769	3.7e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02750
fragaria_vesca	FvH4_5g17170 FvH4_5g17170 FvH4_5g17170
malus_domestica	MD06G1230200.v1.1
prunus_persica	Prupe.5G231300_v2.0.a1
pyrus_communis	pycom06g20140
rosa_chinensis	RchiOBHm_Chr7g0178631
rosa_laevigata	RLG00000005428
rosa_multiflora	Rmu_sc0002320.1_g000006
rosa_rugosa	Rorug06G0418500 Rorug06G0418600 Rorug07G0253600
rosa_samantha	Rh7AG017300 Rh7BG016900 Rh7DG017500
rosa_wichuraiana	Rw7G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	1622
AccB1I	GGYRCC	1 cut(s)	1644
AccB7I	CCANNNNNTGG	1 cut(s)	1092
AccBSI	CCGCTC	1 cut(s)	1032
AccI	GTMKAC	1 cut(s)	1193
AccII	CGCG	1 cut(s)	6
AclWI	GGATC	2 cut(s)	429, 2016
AcoI	YGGCCR	2 cut(s)	232, 1111
AcsI	RAATTY	5 cut(s)	197, 870, 895, 1663, 1822
AcuI	CTGAAG	3 cut(s)	1245, 1821, 2257
AcyI	GRCGYC	1 cut(s)	1645
AfaI	GTAC	4 cut(s)	35, 217, 314, 1325
AfiI	CCNNNNNNNGG	3 cut(s)	162, 1092, 1975
AflII	CTTAAG	1 cut(s)	2245
AflIII	ACRYGT	2 cut(s)	348, 1217
AgsI	TTSAA	9 cut(s)	449, 542, 1464, 1569, 1688, 1873, 1922, 2069, 2139
AhdI	GACNNNNNGTC	1 cut(s)	379
AjnI	CCWGG	3 cut(s)	737, 1647, 1903
AjuI	GAANNNNNNNTTGG	2 cut(s)	836, 868
AleI	CACNNNNGTG	1 cut(s)	2274
AloI	GAACNNNNNNTCC	2 cut(s)	1794, 1826
AluBI	AGCT	7 cut(s)	42, 54, 721, 1475, 1640, 1712, 1914
AluI	AGCT	7 cut(s)	42, 54, 721, 1475, 1640, 1712, 1914
Alw21I	GWGCWC	3 cut(s)	1217, 1714, 2088
Alw26I	GTCTC	3 cut(s)	366, 795, 1396
AlwI	GGATC	2 cut(s)	429, 2016
AlwNI	CAGNNNCTG	2 cut(s)	45, 1697
Ama87I	CYCGRG	1 cut(s)	829
AoxI	GGCC	3 cut(s)	232, 1111, 2153
ApeKI	GCWGC	6 cut(s)	39, 718, 1232, 1472, 1697, 1763
ApoI	RAATTY	5 cut(s)	197, 870, 895, 1663, 1822
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
Asp700I	GAANNNNTTC	3 cut(s)	350, 965, 1560
AspLEI	GCGC	4 cut(s)	6, 228, 1647, 1660
AsuHPI	GGTGA	4 cut(s)	347, 970, 1145, 1862
AsuII	TTCGAA	1 cut(s)	1284
AvaI	CYCGRG	1 cut(s)	829
BalI	TGGCCA	2 cut(s)	234, 1113
BanI	GGYRCC	1 cut(s)	1644
BanII	GRGCYC	2 cut(s)	436, 1714
BarI	GAAGNNNNNNTAC	2 cut(s)	26, 58
BauI	CACGAG	2 cut(s)	435, 1393
BbsI	GAAGAC	1 cut(s)	2196
Bbv12I	GWGCWC	3 cut(s)	1217, 1714, 2088
BbvCI	CCTCAGC	1 cut(s)	2093
BbvI	GCAGC	6 cut(s)	51, 730, 1219, 1484, 1684, 1750
BccI	CCATC	8 cut(s)	83, 670, 1037, 1094, 1166, 1777, 1839, 2213
BcgI	CGANNNNNNTGC	2 cut(s)	810, 844
BciT130I	CCWGG	3 cut(s)	739, 1649, 1905
BcoDI	GTCTC	3 cut(s)	366, 795, 1396
BfaI	CTAG	4 cut(s)	621, 714, 1050, 1188
BfoI	RGCGCY	1 cut(s)	1648
BfrI	CTTAAG	1 cut(s)	2245
BfuAI	ACCTGC	1 cut(s)	1622
BlpI	GCTNAGC	1 cut(s)	55
Bme1390I	CCNGG	3 cut(s)	739, 1649, 1905
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmeT110I	CYCGRG	1 cut(s)	829
BmiI	GGNNCC	2 cut(s)	1646, 1788
BmrFI	CCNGG	3 cut(s)	739, 1649, 1905
BpiI	GAAGAC	1 cut(s)	2196
Bpu10I	CCTNAGC	1 cut(s)	2093
Bpu1102I	GCTNAGC	1 cut(s)	55
Bpu14I	TTCGAA	1 cut(s)	1284
BpuEI	CTTGAG	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	1645
BsaJI	CCNNGG	3 cut(s)	119, 737, 1073
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 1092, 1975
Bse1I	ACTGG	2 cut(s)	1021, 1537
Bse3DI	GCAATG	7 cut(s)	235, 273, 828, 921, 981, 1104, 1312
BseBI	CCWGG	3 cut(s)	739, 1649, 1905
BseDI	CCNNGG	3 cut(s)	119, 737, 1073
BseGI	GGATG	7 cut(s)	472, 738, 808, 855, 862, 1343, 1390
BseLI	CCNNNNNNNGG	3 cut(s)	162, 1092, 1975
BseMI	GCAATG	7 cut(s)	235, 273, 828, 921, 981, 1104, 1312
BseMII	CTCAG	4 cut(s)	69, 357, 1040, 2084
BseNI	ACTGG	2 cut(s)	1021, 1537
BseRI	GAGGAG	3 cut(s)	292, 2087, 2090
BseXI	GCAGC	6 cut(s)	51, 730, 1219, 1484, 1684, 1750
BseYI	CCCAGC	1 cut(s)	1640
BsgI	GTGCAG	2 cut(s)	617, 860
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	3 cut(s)	234, 1113, 2155
BshNI	GGYRCC	1 cut(s)	1644
BsiHKAI	GWGCWC	3 cut(s)	1217, 1714, 2088
BsiHKCI	CYCGRG	1 cut(s)	829
BsiSI	CCGG	1 cut(s)	458
BslFI	GGGAC	1 cut(s)	1970
BslI	CCNNNNNNNGG	3 cut(s)	162, 1092, 1975
BsmAI	GTCTC	3 cut(s)	366, 795, 1396
BsmFI	GGGAC	1 cut(s)	1970
BsmI	GAATGC	3 cut(s)	487, 916, 1731
BsnI	GGCC	3 cut(s)	234, 1113, 2155
BsoBI	CYCGRG	1 cut(s)	829
Bsp119I	TTCGAA	1 cut(s)	1284
Bsp1286I	GDGCHC	4 cut(s)	436, 1217, 1714, 2088
Bsp143I	GATC	4 cut(s)	421, 1407, 1624, 2008
Bsp1720I	GCTNAGC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	119
BspANI	GGCC	3 cut(s)	234, 1113, 2155
BspCNI	CTCAG	4 cut(s)	68, 358, 1039, 2085
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	1646, 1788
BspMI	ACCTGC	1 cut(s)	1622
BspPI	GGATC	2 cut(s)	429, 2016
BspT104I	TTCGAA	1 cut(s)	1284
BspT107I	GGYRCC	1 cut(s)	1644
BspTI	CTTAAG	1 cut(s)	2245
BsrBI	CCGCTC	1 cut(s)	1032
BsrDI	GCAATG	7 cut(s)	235, 273, 828, 921, 981, 1104, 1312
BsrI	ACTGG	2 cut(s)	1021, 1537
BssECI	CCNNGG	3 cut(s)	119, 737, 1073
BssMI	GATC	4 cut(s)	421, 1407, 1624, 2008
BssNI	GRCGYC	1 cut(s)	1645
BssSI	CACGAG	2 cut(s)	435, 1393
BssT1I	CCWWGG	1 cut(s)	119
Bst2BI	CACGAG	2 cut(s)	435, 1393
Bst2UI	CCWGG	3 cut(s)	739, 1649, 1905
Bst4CI	ACNGT	4 cut(s)	17, 27, 33, 2105
Bst6I	CTCTTC	5 cut(s)	143, 237, 1131, 1995, 2064
BstACI	GRCGYC	1 cut(s)	1645
BstAFI	CTTAAG	1 cut(s)	2245
BstAPI	GCANNNNNTGC	3 cut(s)	45, 920, 1358
BstBI	TTCGAA	1 cut(s)	1284
BstC8I	GCNNGC	5 cut(s)	585, 654, 1070, 1111, 1726
BstDEI	CTNAG	7 cut(s)	55, 366, 398, 639, 1026, 1767, 2093
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	7 cut(s)	472, 738, 808, 855, 862, 1343, 1390
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	1 cut(s)	1648
BstHHI	GCGC	4 cut(s)	6, 228, 1647, 1660
BstKTI	GATC	4 cut(s)	424, 1410, 1627, 2011
BstMAI	GTCTC	3 cut(s)	366, 795, 1396
BstMBI	GATC	4 cut(s)	421, 1407, 1624, 2008
BstMWI	GCNNNNNNNGC	9 cut(s)	45, 818, 920, 1106, 1115, 1229, 1302, 1358, 1737
BstNI	CCWGG	3 cut(s)	739, 1649, 1905
BstNSI	RCATGY	3 cut(s)	1072, 1221, 2092
BstSCI	CCNGG	3 cut(s)	737, 1647, 1903
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	6 cut(s)	51, 730, 1219, 1484, 1684, 1750
BstV2I	GAAGAC	1 cut(s)	2196
BstX2I	RGATCY	2 cut(s)	421, 2008
BstXI	CCANNNNNNTGG	2 cut(s)	120, 2227
BstYI	RGATCY	2 cut(s)	421, 2008
BsuRI	GGCC	3 cut(s)	234, 1113, 2155
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	7 cut(s)	472, 738, 808, 855, 862, 1343, 1390
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	3 cut(s)	663, 2110, 2281
BveI	ACCTGC	1 cut(s)	1622
Cac8I	GCNNGC	5 cut(s)	585, 654, 1070, 1111, 1726
CaiI	CAGNNNCTG	2 cut(s)	45, 1697
CfoI	GCGC	4 cut(s)	6, 228, 1647, 1660
CseI	GACGC	1 cut(s)	1136
Csp6I	GTAC	4 cut(s)	34, 216, 313, 1324
CviQI	GTAC	4 cut(s)	34, 216, 313, 1324
DdeI	CTNAG	7 cut(s)	55, 366, 398, 639, 1026, 1767, 2093
DinI	GGCGCC	1 cut(s)	1646
DpnI	GATC	4 cut(s)	423, 1409, 1626, 2010
DpnII	GATC	4 cut(s)	421, 1407, 1624, 2008
DriI	GACNNNNNGTC	1 cut(s)	379
EaeI	YGGCCR	2 cut(s)	232, 1111
Eam1104I	CTCTTC	5 cut(s)	143, 237, 1131, 1995, 2064
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	5 cut(s)	143, 237, 1131, 1995, 2064
Ecl136II	GAGCTC	1 cut(s)	1712
Eco130I	CCWWGG	1 cut(s)	119
Eco24I	GRGCYC	2 cut(s)	436, 1714
Eco32I	GATATC	2 cut(s)	306, 567
Eco53kI	GAGCTC	1 cut(s)	1712
Eco57I	CTGAAG	3 cut(s)	1245, 1821, 2257
Eco88I	CYCGRG	1 cut(s)	829
EcoICRI	GAGCTC	1 cut(s)	1712
EcoRI	GAATTC	1 cut(s)	895
EcoRII	CCWGG	3 cut(s)	737, 1647, 1903
EcoRV	GATATC	2 cut(s)	306, 567
EcoT14I	CCWWGG	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	1343
EcoT38I	GRGCYC	2 cut(s)	436, 1714
EgeI	GGCGCC	1 cut(s)	1646
EheI	GGCGCC	1 cut(s)	1646
ErhI	CCWWGG	1 cut(s)	119
FaqI	GGGAC	1 cut(s)	1970
FauI	CCCGC	2 cut(s)	2016, 2288
FblI	GTMKAC	1 cut(s)	1193
FokI	GGATG	7 cut(s)	479, 745, 815, 862, 869, 1350, 1397
FriOI	GRGCYC	2 cut(s)	436, 1714
FspBI	CTAG	4 cut(s)	621, 714, 1050, 1188
FspI	TGCGCA	1 cut(s)	227
GlaI	GCGC	4 cut(s)	5, 227, 1646, 1659
GsaI	CCCAGC	1 cut(s)	1644
HaeII	RGCGCY	1 cut(s)	1648
HaeIII	GGCC	3 cut(s)	234, 1113, 2155
HapII	CCGG	1 cut(s)	458
HgaI	GACGC	1 cut(s)	1136
HhaI	GCGC	4 cut(s)	6, 228, 1647, 1660
Hin1I	GRCGYC	1 cut(s)	1645
Hin6I	GCGC	4 cut(s)	4, 226, 1645, 1658
HinP1I	GCGC	4 cut(s)	4, 226, 1645, 1658
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	4 cut(s)	347, 970, 1145, 1862
Hpy166II	GTNNAC	3 cut(s)	816, 1194, 1543
Hpy188I	TCNGA	7 cut(s)	181, 187, 276, 766, 1029, 1378, 2013
Hpy188III	TCNNGA	2 cut(s)	1577, 1894
Hpy8I	GTNNAC	3 cut(s)	816, 1194, 1543
Hpy99I	CGWCG	1 cut(s)	2066
HpyAV	CCTTC	5 cut(s)	1462, 1545, 1969, 2002, 2226
HpyCH4III	ACNGT	4 cut(s)	17, 27, 33, 2105
HpyCH4IV	ACGT	4 cut(s)	348, 451, 516, 2064
HpyF10VI	GCNNNNNNNGC	9 cut(s)	45, 818, 920, 1106, 1115, 1229, 1302, 1358, 1737
HpyF3I	CTNAG	7 cut(s)	55, 366, 398, 639, 1026, 1767, 2093
HpySE526I	ACGT	4 cut(s)	348, 451, 516, 2064
Hsp92I	GRCGYC	1 cut(s)	1645
HspAI	GCGC	4 cut(s)	4, 226, 1645, 1658
KasI	GGCGCC	1 cut(s)	1644
Kzo9I	GATC	4 cut(s)	421, 1407, 1624, 2008
LmnI	GCTCC	1 cut(s)	1709
Lsp1109I	GCAGC	6 cut(s)	51, 730, 1219, 1484, 1684, 1750
MaeI	CTAG	4 cut(s)	621, 714, 1050, 1188
MaeII	ACGT	4 cut(s)	348, 451, 516, 2064
MaeIII	GTNAC	4 cut(s)	11, 27, 512, 1495
MalI	GATC	4 cut(s)	423, 1409, 1626, 2010
MbiI	CCGCTC	1 cut(s)	1032
MboI	GATC	4 cut(s)	421, 1407, 1624, 2008
MflI	RGATCY	2 cut(s)	421, 2008
MhlI	GDGCHC	4 cut(s)	436, 1217, 1714, 2088
MlsI	TGGCCA	2 cut(s)	234, 1113
MluNI	TGGCCA	2 cut(s)	234, 1113
Mly113I	GGCGCC	1 cut(s)	1645
MlyI	GAGTC	3 cut(s)	176, 644, 1952
MmeI	TCCRAC	4 cut(s)	204, 254, 834, 1986
Mox20I	TGGCCA	2 cut(s)	234, 1113
Mph1103I	ATGCAT	1 cut(s)	1343
MroXI	GAANNNNTTC	3 cut(s)	350, 965, 1560
MscI	TGGCCA	2 cut(s)	234, 1113
MseI	TTAA	8 cut(s)	195, 201, 261, 984, 1013, 1482, 1667, 2246
MslI	CAYNNNNRTG	3 cut(s)	956, 2103, 2274
Msp20I	TGGCCA	2 cut(s)	234, 1113
MspCI	CTTAAG	1 cut(s)	2245
MspI	CCGG	1 cut(s)	458
MspR9I	CCNGG	3 cut(s)	739, 1649, 1905
Mva1269I	GAATGC	3 cut(s)	487, 916, 1731
MvaI	CCWGG	3 cut(s)	739, 1649, 1905
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	9 cut(s)	45, 818, 920, 1106, 1115, 1229, 1302, 1358, 1737
NarI	GGCGCC	1 cut(s)	1645
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	4 cut(s)	421, 1407, 1624, 2008
NlaIV	GGNNCC	2 cut(s)	1646, 1788
NmeAIII	GCCGAG	1 cut(s)	1054
NsbI	TGCGCA	1 cut(s)	227
NsiI	ATGCAT	1 cut(s)	1343
NspI	RCATGY	3 cut(s)	1072, 1221, 2092
NspV	TTCGAA	1 cut(s)	1284
OliI	CACNNNNGTG	1 cut(s)	2274
PaeI	GCATGC	1 cut(s)	1072
PciI	ACATGT	1 cut(s)	1217
PcsI	WCGNNNNNNNCGW	1 cut(s)	1400
PctI	GAATGC	3 cut(s)	487, 916, 1731
PdmI	GAANNNNTTC	3 cut(s)	350, 965, 1560
PfeI	GAWTC	7 cut(s)	1082, 1281, 1460, 1573, 1936, 2131, 2252
PflFI	GACNNNGTC	1 cut(s)	1189
PflMI	CCANNNNNTGG	1 cut(s)	1092
PfoI	TCCNGGA	1 cut(s)	1903
PleI	GAGTC	3 cut(s)	176, 643, 1952
PluTI	GGCGCC	1 cut(s)	1648
PpsI	GAGTC	3 cut(s)	176, 643, 1952
PscI	ACATGT	1 cut(s)	1217
Psp124BI	GAGCTC	1 cut(s)	1714
Psp6I	CCWGG	3 cut(s)	737, 1647, 1903
PspFI	CCCAGC	1 cut(s)	1640
PspGI	CCWGG	3 cut(s)	737, 1647, 1903
PspN4I	GGNNCC	2 cut(s)	1646, 1788
PstNI	CAGNNNCTG	2 cut(s)	45, 1697
PsuI	RGATCY	2 cut(s)	421, 2008
PsyI	GACNNNGTC	1 cut(s)	1189
RsaI	GTAC	4 cut(s)	35, 217, 314, 1325
RsaNI	GTAC	4 cut(s)	34, 216, 313, 1324
RseI	CAYNNNNRTG	3 cut(s)	956, 2103, 2274
SacI	GAGCTC	1 cut(s)	1714
SaqAI	TTAA	8 cut(s)	195, 201, 261, 984, 1013, 1482, 1667, 2246
Sau3AI	GATC	4 cut(s)	421, 1407, 1624, 2008
SchI	GAGTC	3 cut(s)	176, 644, 1952
ScrFI	CCNGG	3 cut(s)	739, 1649, 1905
SduI	GDGCHC	4 cut(s)	436, 1217, 1714, 2088
SfoI	GGCGCC	1 cut(s)	1646
SfuI	TTCGAA	1 cut(s)	1284
SmiMI	CAYNNNNRTG	3 cut(s)	956, 2103, 2274
SmlI	CTYRAG	2 cut(s)	49, 2245
SmoI	CTYRAG	2 cut(s)	49, 2245
SphI	GCATGC	1 cut(s)	1072
SspDI	GGCGCC	1 cut(s)	1644
SspMI	CTAG	4 cut(s)	621, 714, 1050, 1188
SstI	GAGCTC	1 cut(s)	1714
StyD4I	CCNGG	3 cut(s)	737, 1647, 1903
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	4 cut(s)	17, 27, 33, 2105
TaiI	ACGT	4 cut(s)	351, 454, 519, 2067
TaqI	TCGA	6 cut(s)	78, 354, 726, 969, 1284, 1458
TatI	WGTACW	1 cut(s)	1323
TauI	GCSGC	4 cut(s)	590, 1035, 1100, 1731
TfiI	GAWTC	7 cut(s)	1082, 1281, 1460, 1573, 1936, 2131, 2252
Tru1I	TTAA	8 cut(s)	195, 201, 261, 984, 1013, 1482, 1667, 2246
Tru9I	TTAA	8 cut(s)	195, 201, 261, 984, 1013, 1482, 1667, 2246
TscAI	CASTG	3 cut(s)	663, 2110, 2281
TseI	GCWGC	6 cut(s)	39, 718, 1232, 1472, 1697, 1763
TspGWI	ACGGA	1 cut(s)	2150
TspRI	CASTG	3 cut(s)	663, 2110, 2281
Tth111I	GACNNNGTC	1 cut(s)	1189
Van91I	CCANNNNNTGG	1 cut(s)	1092
Vha464I	CTTAAG	1 cut(s)	2245
XapI	RAATTY	5 cut(s)	197, 870, 895, 1663, 1822
XceI	RCATGY	3 cut(s)	1072, 1221, 2092
XcmI	CCANNNNNNNNNTGG	2 cut(s)	227, 1121
XmiI	GTMKAC	1 cut(s)	1193
XmnI	GAANNNNTTC	3 cut(s)	350, 965, 1560
XspI	CTAG	4 cut(s)	621, 714, 1050, 1188
Zsp2I	ATGCAT	1 cut(s)	1343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.