Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013837

Physical Location & Seq

Genomic Coordinates Reverse (-)

1066550 .. 1069761

Gene Structure 3212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG016900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2340 bp

ATGCGCGGGAGTTACCGTTTGACACAGTTACAGTACCGCAGTTTCTGCTCAAGCTCAGCCAAAGCCCAGAAACCCATCAACATCAGTTTTGGAAACCCCACTAACCCAATCCCATGGAAGAAAACAAAGACCCAGAAGCAGAAGAGTTCCATGAATAGGTTATCAAATGCTTCCGACTCGGAAGTTGTTAAATTTAACATGGAAATCAGTACCCAAATGCGCAATGGCCAATGTGAAGAGGCTCTGCGTGTGTTTAATGCAATGGGTCGGAGGAGTTCGGTTTCTTACAATGCTATGATATCTGGGTACTTGGCAAATGGGAAGTTTGATGATGCAAAGGACGTGTTCGACAAAATGCCTGAGAGAGACTTGGTGTCTTGGAATGTGATGCTTAGTGGGTATGTGAGGAATAGGGATCTTGGTGGGGCTCGTGCTTTGTTTGAACGTATGCCGGAAAAGGATGTTGTTTCATGGAATGCTATTTTATCTGGCTATGCCCAGAATGGTTATGTTGATGAGGCGAGGAAGGTTTTCGAAATGATGCCGAAAAAGAATGAGATATCTTGGAATGGGTTGCTTGCGGCTTATGTGCAGAATGGGAGGATAGAAAGTGCTAGGAGGTTGTTTGAGTCTAAGGCAGATTGGCAAGCAGTGTCTTGGAATTGTTTGATGGGGGGATTTGTGAAACAAAAGAGATTGGCTGATGCTAGGCAGCTTTTTGAGAGAATGCCTGCGAGGGATGAAGTTTCGTGGAATACTATGATCACAGGGTATGCACAGAATGGGGGAATGTCAGAGGCAAGGAGATTGTTTGAGCAGTCTCCTGTAAGGGATGTGTTTGCGTGGACAGCAATGCTTTCGGGTTATGTGCAGAATGGGATGTTGGATGAAGCAAGAAGAATTTTTGATGAAATGCCGGAGAAGAATTCGGTTTCGTGGAATGCAATGATTGCAGGGTATGTGCAAGACAAGAGAATGGACATGGCGGTGAAATTGTTTGAGGCAATGCCTTTTAAGAATGTGAGTTCTTGGAATACCATTTTAACTGGCTATGCTCAGAGCGGCGATATTGATGGTGCTAGGAAAGTCTTTGATAGCATGCCTCGGCGTGATTCCATCTCCTGGGCGGCTATCATTGCTGGCCATGCTCAAAATGGTTTCGGTGAAGAGGCTTTGCGTCTATTTGTGGAGATGAAAAGAGATGGGGAACGGCTGACTAGGTCTACATTTTCGTGTGCCTTGAGCACATGTGCTGAAGTTGCTGCTTTAGAGTTGGGGAAGCAATTACATGGGCGTTTAGCAAAAGCAGGATTCGAAAGTGGGTGCTATGTGGGCAATGCACTCCTTGTAATGTACTGCAAGTGTGGATGCATAGAGGAAGCATATGATGCGTTCCAAGAAATATCTGAAAAGGATGTTGTCTCGTGGAACACGATGATCTATGGTTATGCAAGGCATGGATTTGGCTTAAAGGCTCTCATGGTTTTCGATTCAATGAAGGCAGCTGGTATTAAACCTGATGAAGTAACAATGGTGGGTGTATTGTCTGCTTGTAGTCATACTGGCTTTGTGGACAGGGGAAGAGAATACTTTCATTCAATGAATCAGGAATATGGCATCACAGCAAATGCAAAACACTATACCTGCCTGATTGATCTTTTAGGTAGAGCTGGGCGCCTGGAAGAAGCGCAGAATTTAATGAGAACGATGCCTTTTGAACCAGATGCTGCAACATGGGGAGCTCTACTTGGCGCAAGCCGCATTCATGGCAATACTGAATTAGGAGAAAAGGCTGCTAAGATAATTTTTGAGATGGAACCTGAAAATGCAGGAATGTATGTTCTTCTCTCAAATTTATATGCTTCTTCAGGCAGATGGGCTGATGTTGGTAGAATGAGATTGAAAATGAGAGATAAAGGTGTCAGGAAAGTTCCTGGATATAGCTGGATTGAAGTGCAAAACAAGATTCACACATATTCAGTTGGGGACTCTATACACCCAGAGAAGGACAATATATATGCCTTCTTGGAAGAGTTGGATTTGAAAATGAAGCAGGAGGGATATGTTTCATCTACAAAGTTGGTTTTGCACGACGTTGAAGAGGAGGAGAAAGAGCACATGCTGAGGCATCACAGTGAGAAATTGGCTGTGGCATTTGGGATTCTTTCAATTCCAGCAGGGAGGCCAATCCGTGTAATGAAGAACTTGCGAGTATGTGAAGACTGCCACAATGCCATCAAATACATATCCAAGATTGTGGGAAGGACAATAATCTTAAGGGATTCTAACCGCTTCCACCACTTCAGTGAGGGTTCTTGTTCTTGCGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

779

Amino Acids

87.97

Weight (kDa)

8.59

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	92 - 122	1e-07	PPR repeat family
PPR	PF01535	94 - 123	1.6e-08	PPR repeat
PPR	PF01535	125 - 154	1.7e-06	PPR repeat
PPR_2	PF13041	153 - 185	9.4e-08	PPR repeat family
PPR_1	PF12854	154 - 181	2e-06	PPR repeat
PPR	PF01535	156 - 185	4.1e-08	PPR repeat
PPR	PF01535	249 - 273	8.5e-06	PPR repeat
PPR_2	PF13041	277 - 309	6.1e-07	PPR repeat family
PPR	PF01535	281 - 309	1.3e-08	PPR repeat
PPR_2	PF13041	308 - 341	1.4e-07	PPR repeat family
PPR	PF01535	311 - 339	1.6e-06	PPR repeat
PPR_2	PF13041	339 - 370	4.1e-06	PPR repeat family
PPR	PF01535	343 - 370	5e-06	PPR repeat
PPR_2	PF13041	371 - 418	1.7e-06	PPR repeat family
PPR	PF01535	373 - 402	9.2e-06	PPR repeat
PPR_2	PF13041	471 - 519	1.7e-11	PPR repeat family
PPR	PF01535	474 - 504	7.3e-08	PPR repeat
E_motif	PF20431	589 - 651	2.3e-22	E motif
DYW_deaminase	PF14432	687 - 779	3.8e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02750
fragaria_vesca	FvH4_5g17170 FvH4_5g17170 FvH4_5g17170
malus_domestica	MD06G1230200.v1.1
prunus_persica	Prupe.5G231300_v2.0.a1
pyrus_communis	pycom06g20140
rosa_chinensis	RchiOBHm_Chr7g0178631
rosa_laevigata	RLG00000005428
rosa_multiflora	Rmu_sc0002320.1_g000006
rosa_rugosa	Rorug06G0418500 Rorug06G0418600 Rorug07G0253600
rosa_samantha	Rh7AG017300 Rh7BG016900 Rh7DG017500
rosa_wichuraiana	Rw7G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	1652
AccB1I	GGYRCC	1 cut(s)	1674
AccB7I	CCANNNNNTGG	1 cut(s)	1122
AccBSI	CCGCTC	1 cut(s)	1062
AccI	GTMKAC	1 cut(s)	1223
AccII	CGCG	1 cut(s)	6
AciI	CCGC	9 cut(s)	6, 37, 581, 986, 1062, 1127, 1759, 2290, 2325
AclWI	GGATC	1 cut(s)	423
AcoI	YGGCCR	2 cut(s)	226, 1141
AcsI	RAATTY	5 cut(s)	191, 900, 925, 1693, 1852
AcuI	CTGAAG	3 cut(s)	1275, 1851, 2287
AcyI	GRCGYC	1 cut(s)	1675
AfaI	GTAC	4 cut(s)	35, 211, 308, 1355
AfiI	CCNNNNNNNGG	3 cut(s)	156, 1122, 2005
AflII	CTTAAG	1 cut(s)	2275
AflIII	ACRYGT	2 cut(s)	342, 1247
AgsI	TTSAA	9 cut(s)	443, 1494, 1599, 1718, 1903, 1952, 2044, 2099, 2169
AhdI	GACNNNNNGTC	1 cut(s)	373
AjiI	CACGTC	1 cut(s)	343
AjnI	CCWGG	3 cut(s)	1121, 1677, 1933
AjuI	GAANNNNNNNTTGG	2 cut(s)	866, 898
AleI	CACNNNNGTG	1 cut(s)	2304
AloI	GAACNNNNNNTCC	2 cut(s)	1824, 1856
AluBI	AGCT	6 cut(s)	54, 715, 1505, 1670, 1742, 1944
AluI	AGCT	6 cut(s)	54, 715, 1505, 1670, 1742, 1944
Alw21I	GWGCWC	3 cut(s)	1247, 1744, 2118
Alw26I	GTCTC	3 cut(s)	360, 825, 1426
AlwI	GGATC	1 cut(s)	423
AlwNI	CAGNNNCTG	2 cut(s)	45, 1727
AoxI	GGCC	3 cut(s)	226, 1141, 2183
ApeKI	GCWGC	5 cut(s)	712, 1262, 1502, 1727, 1793
ApoI	RAATTY	5 cut(s)	191, 900, 925, 1693, 1852
Asp700I	GAANNNNTTC	2 cut(s)	530, 1590
AspLEI	GCGC	5 cut(s)	6, 222, 1677, 1690, 1754
AsuHPI	GGTGA	2 cut(s)	1000, 1175
AsuII	TTCGAA	2 cut(s)	534, 1314
BalI	TGGCCA	2 cut(s)	228, 1143
BanI	GGYRCC	1 cut(s)	1674
BanII	GRGCYC	2 cut(s)	430, 1744
BauI	CACGAG	2 cut(s)	429, 1423
BbsI	GAAGAC	1 cut(s)	2226
Bbv12I	GWGCWC	3 cut(s)	1247, 1744, 2118
BbvCI	CCTCAGC	1 cut(s)	2123
BbvI	GCAGC	5 cut(s)	724, 1249, 1514, 1714, 1780
BccI	CCATC	8 cut(s)	83, 664, 1067, 1124, 1196, 1807, 1869, 2243
BceAI	ACGGC	1 cut(s)	1226
BcgI	CGANNNNNNTGC	2 cut(s)	840, 874
BciT130I	CCWGG	3 cut(s)	1123, 1679, 1935
BclI	TGATCA	1 cut(s)	762
BcoDI	GTCTC	3 cut(s)	360, 825, 1426
BfaI	CTAG	4 cut(s)	615, 708, 1080, 1218
BfoI	RGCGCY	1 cut(s)	1678
BfrI	CTTAAG	1 cut(s)	2275
BfuAI	ACCTGC	1 cut(s)	1652
BisI	GCNGC	9 cut(s)	582, 713, 1063, 1128, 1263, 1503, 1728, 1759, 1794
BlpI	GCTNAGC	1 cut(s)	55
BlsI	GCNGC	9 cut(s)	583, 714, 1064, 1129, 1264, 1504, 1729, 1760, 1795
Bme1390I	CCNGG	3 cut(s)	1123, 1679, 1935
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmgBI	CACGTC	1 cut(s)	343
BmiI	GGNNCC	2 cut(s)	1676, 1818
BmrFI	CCNGG	3 cut(s)	1123, 1679, 1935
BpiI	GAAGAC	1 cut(s)	2226
Bpu10I	CCTNAGC	1 cut(s)	2123
Bpu1102I	GCTNAGC	1 cut(s)	55
Bpu14I	TTCGAA	2 cut(s)	534, 1314
BpuEI	CTTGAG	2 cut(s)	34, 1261
BsaHI	GRCGYC	1 cut(s)	1675
BsaJI	CCNNGG	3 cut(s)	113, 1103, 1122
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 1122, 2005
Bse1I	ACTGG	2 cut(s)	1051, 1567
Bse3DI	GCAATG	7 cut(s)	229, 267, 858, 951, 1011, 1134, 1342
BseBI	CCWGG	3 cut(s)	1123, 1679, 1935
BseDI	CCNNGG	3 cut(s)	113, 1103, 1122
BseGI	GGATG	7 cut(s)	466, 745, 838, 885, 892, 1373, 1420
BseLI	CCNNNNNNNGG	3 cut(s)	156, 1122, 2005
BseMI	GCAATG	7 cut(s)	229, 267, 858, 951, 1011, 1134, 1342
BseMII	CTCAG	4 cut(s)	69, 351, 1070, 2114
BseNI	ACTGG	2 cut(s)	1051, 1567
BseRI	GAGGAG	3 cut(s)	286, 2117, 2120
BseXI	GCAGC	5 cut(s)	724, 1249, 1514, 1714, 1780
BseYI	CCCAGC	1 cut(s)	1670
BsgI	GTGCAG	2 cut(s)	611, 890
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	3 cut(s)	228, 1143, 2185
BshNI	GGYRCC	1 cut(s)	1674
BsiHKAI	GWGCWC	3 cut(s)	1247, 1744, 2118
BsiSI	CCGG	2 cut(s)	452, 917
BslFI	GGGAC	1 cut(s)	2000
BslI	CCNNNNNNNGG	3 cut(s)	156, 1122, 2005
BsmAI	GTCTC	3 cut(s)	360, 825, 1426
BsmFI	GGGAC	1 cut(s)	2000
BsmI	GAATGC	4 cut(s)	481, 732, 946, 1761
BsnI	GGCC	3 cut(s)	228, 1143, 2185
Bsp119I	TTCGAA	2 cut(s)	534, 1314
Bsp1286I	GDGCHC	4 cut(s)	430, 1247, 1744, 2118
Bsp143I	GATC	4 cut(s)	415, 762, 1437, 1654
Bsp1720I	GCTNAGC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	113
BspACI	CCGC	9 cut(s)	6, 37, 581, 986, 1062, 1127, 1759, 2290, 2325
BspANI	GGCC	3 cut(s)	228, 1143, 2185
BspCNI	CTCAG	4 cut(s)	68, 352, 1069, 2115
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	1676, 1818
BspMI	ACCTGC	1 cut(s)	1652
BspPI	GGATC	1 cut(s)	423
BspT104I	TTCGAA	2 cut(s)	534, 1314
BspT107I	GGYRCC	1 cut(s)	1674
BspTI	CTTAAG	1 cut(s)	2275
BsrBI	CCGCTC	1 cut(s)	1062
BsrDI	GCAATG	7 cut(s)	229, 267, 858, 951, 1011, 1134, 1342
BsrI	ACTGG	2 cut(s)	1051, 1567
BssECI	CCNNGG	3 cut(s)	113, 1103, 1122
BssMI	GATC	4 cut(s)	415, 762, 1437, 1654
BssNI	GRCGYC	1 cut(s)	1675
BssSI	CACGAG	2 cut(s)	429, 1423
BssT1I	CCWWGG	1 cut(s)	113
Bst2BI	CACGAG	2 cut(s)	429, 1423
Bst2UI	CCWGG	3 cut(s)	1123, 1679, 1935
Bst4CI	ACNGT	4 cut(s)	17, 27, 33, 2135
Bst6I	CTCTTC	6 cut(s)	137, 231, 1161, 1576, 2025, 2094
BstACI	GRCGYC	1 cut(s)	1675
BstAFI	CTTAAG	1 cut(s)	2275
BstAPI	GCANNNNNTGC	3 cut(s)	45, 950, 1388
BstBI	TTCGAA	2 cut(s)	534, 1314
BstC8I	GCNNGC	6 cut(s)	579, 648, 732, 1100, 1141, 1756
BstDEI	CTNAG	7 cut(s)	55, 360, 392, 633, 1056, 1797, 2123
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	7 cut(s)	466, 745, 838, 885, 892, 1373, 1420
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	1 cut(s)	1678
BstHHI	GCGC	5 cut(s)	6, 222, 1677, 1690, 1754
BstKTI	GATC	4 cut(s)	418, 765, 1440, 1657
BstMAI	GTCTC	3 cut(s)	360, 825, 1426
BstMBI	GATC	4 cut(s)	415, 762, 1437, 1654
BstNI	CCWGG	3 cut(s)	1123, 1679, 1935
BstNSI	RCATGY	3 cut(s)	1102, 1251, 2122
BstSCI	CCNGG	3 cut(s)	1121, 1677, 1933
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	5 cut(s)	724, 1249, 1514, 1714, 1780
BstV2I	GAAGAC	1 cut(s)	2226
BstX2I	RGATCY	1 cut(s)	415
BstXI	CCANNNNNNTGG	2 cut(s)	114, 2257
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	228, 1143, 2185
BtgI	CCRYGG	1 cut(s)	113
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	7 cut(s)	466, 745, 838, 885, 892, 1373, 1420
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	3 cut(s)	657, 2140, 2311
BveI	ACCTGC	1 cut(s)	1652
Cac8I	GCNNGC	6 cut(s)	579, 648, 732, 1100, 1141, 1756
CaiI	CAGNNNCTG	2 cut(s)	45, 1727
CfoI	GCGC	5 cut(s)	6, 222, 1677, 1690, 1754
CseI	GACGC	1 cut(s)	1166
Csp6I	GTAC	4 cut(s)	34, 210, 307, 1354
CviQI	GTAC	4 cut(s)	34, 210, 307, 1354
DdeI	CTNAG	7 cut(s)	55, 360, 392, 633, 1056, 1797, 2123
DinI	GGCGCC	1 cut(s)	1676
DpnI	GATC	4 cut(s)	417, 764, 1439, 1656
DpnII	GATC	4 cut(s)	415, 762, 1437, 1654
DriI	GACNNNNNGTC	1 cut(s)	373
EaeI	YGGCCR	2 cut(s)	226, 1141
Eam1104I	CTCTTC	6 cut(s)	137, 231, 1161, 1576, 2025, 2094
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EarI	CTCTTC	6 cut(s)	137, 231, 1161, 1576, 2025, 2094
Ecl136II	GAGCTC	1 cut(s)	1742
Eco130I	CCWWGG	1 cut(s)	113
Eco24I	GRGCYC	2 cut(s)	430, 1744
Eco32I	GATATC	2 cut(s)	300, 561
Eco53kI	GAGCTC	1 cut(s)	1742
Eco57I	CTGAAG	3 cut(s)	1275, 1851, 2287
EcoICRI	GAGCTC	1 cut(s)	1742
EcoRI	GAATTC	1 cut(s)	925
EcoRII	CCWGG	3 cut(s)	1121, 1677, 1933
EcoRV	GATATC	2 cut(s)	300, 561
EcoT14I	CCWWGG	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	1373
EcoT38I	GRGCYC	2 cut(s)	430, 1744
EgeI	GGCGCC	1 cut(s)	1676
EheI	GGCGCC	1 cut(s)	1676
ErhI	CCWWGG	1 cut(s)	113
FaqI	GGGAC	1 cut(s)	2000
FauI	CCCGC	1 cut(s)	2318
FauNDI	CATATG	1 cut(s)	1384
FbaI	TGATCA	1 cut(s)	762
FblI	GTMKAC	1 cut(s)	1223
Fnu4HI	GCNGC	9 cut(s)	582, 713, 1063, 1128, 1263, 1503, 1728, 1759, 1794
FokI	GGATG	7 cut(s)	473, 752, 845, 892, 899, 1380, 1427
FriOI	GRGCYC	2 cut(s)	430, 1744
Fsp4HI	GCNGC	9 cut(s)	582, 713, 1063, 1128, 1263, 1503, 1728, 1759, 1794
FspBI	CTAG	4 cut(s)	615, 708, 1080, 1218
FspI	TGCGCA	1 cut(s)	221
GlaI	GCGC	5 cut(s)	5, 221, 1676, 1689, 1753
GluI	GCNGC	9 cut(s)	582, 713, 1063, 1128, 1263, 1503, 1728, 1759, 1794
GsaI	CCCAGC	1 cut(s)	1674
HaeII	RGCGCY	1 cut(s)	1678
HaeIII	GGCC	3 cut(s)	228, 1143, 2185
HapII	CCGG	2 cut(s)	452, 917
HgaI	GACGC	1 cut(s)	1166
HhaI	GCGC	5 cut(s)	6, 222, 1677, 1690, 1754
Hin1I	GRCGYC	1 cut(s)	1675
Hin6I	GCGC	5 cut(s)	4, 220, 1675, 1688, 1752
HinP1I	GCGC	5 cut(s)	4, 220, 1675, 1688, 1752
HpaII	CCGG	2 cut(s)	452, 917
HphI	GGTGA	2 cut(s)	1000, 1175
Hpy166II	GTNNAC	3 cut(s)	846, 1224, 1573
Hpy188I	TCNGA	6 cut(s)	175, 181, 270, 796, 1059, 1408
Hpy188III	TCNNGA	2 cut(s)	1607, 1924
Hpy8I	GTNNAC	3 cut(s)	846, 1224, 1573
Hpy99I	CGWCG	1 cut(s)	2096
HpyAV	CCTTC	5 cut(s)	520, 1492, 1999, 2032, 2256
HpyCH4III	ACNGT	4 cut(s)	17, 27, 33, 2135
HpyCH4IV	ACGT	3 cut(s)	342, 445, 2094
HpyF3I	CTNAG	7 cut(s)	55, 360, 392, 633, 1056, 1797, 2123
HpySE526I	ACGT	3 cut(s)	342, 445, 2094
Hsp92I	GRCGYC	1 cut(s)	1675
HspAI	GCGC	5 cut(s)	4, 220, 1675, 1688, 1752
KasI	GGCGCC	1 cut(s)	1674
Ksp22I	TGATCA	1 cut(s)	762
Kzo9I	GATC	4 cut(s)	415, 762, 1437, 1654
LmnI	GCTCC	1 cut(s)	1739
Lsp1109I	GCAGC	5 cut(s)	724, 1249, 1514, 1714, 1780
MaeI	CTAG	4 cut(s)	615, 708, 1080, 1218
MaeII	ACGT	3 cut(s)	342, 445, 2094
MaeIII	GTNAC	3 cut(s)	11, 27, 1525
MalI	GATC	4 cut(s)	417, 764, 1439, 1656
MbiI	CCGCTC	1 cut(s)	1062
MboI	GATC	4 cut(s)	415, 762, 1437, 1654
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	4 cut(s)	430, 1247, 1744, 2118
MlsI	TGGCCA	2 cut(s)	228, 1143
MluNI	TGGCCA	2 cut(s)	228, 1143
Mly113I	GGCGCC	1 cut(s)	1675
MlyI	GAGTC	3 cut(s)	170, 638, 1982
MmeI	TCCRAC	4 cut(s)	198, 248, 864, 2016
Mox20I	TGGCCA	2 cut(s)	228, 1143
Mph1103I	ATGCAT	1 cut(s)	1373
MroXI	GAANNNNTTC	2 cut(s)	530, 1590
MscI	TGGCCA	2 cut(s)	228, 1143
MseI	TTAA	9 cut(s)	189, 195, 255, 1014, 1043, 1469, 1512, 1697, 2276
MslI	CAYNNNNRTG	4 cut(s)	986, 1231, 2133, 2304
Msp20I	TGGCCA	2 cut(s)	228, 1143
MspA1I	CMGCKG	1 cut(s)	1505
MspCI	CTTAAG	1 cut(s)	2275
MspI	CCGG	2 cut(s)	452, 917
MspR9I	CCNGG	3 cut(s)	1123, 1679, 1935
Mva1269I	GAATGC	4 cut(s)	481, 732, 946, 1761
MvaI	CCWGG	3 cut(s)	1123, 1679, 1935
MvnI	CGCG	1 cut(s)	6
NarI	GGCGCC	1 cut(s)	1675
NcoI	CCATGG	1 cut(s)	113
NdeI	CATATG	1 cut(s)	1384
NdeII	GATC	4 cut(s)	415, 762, 1437, 1654
NlaIV	GGNNCC	2 cut(s)	1676, 1818
NmeAIII	GCCGAG	1 cut(s)	1084
NsbI	TGCGCA	1 cut(s)	221
NsiI	ATGCAT	1 cut(s)	1373
NspI	RCATGY	3 cut(s)	1102, 1251, 2122
NspV	TTCGAA	2 cut(s)	534, 1314
OliI	CACNNNNGTG	1 cut(s)	2304
PaeI	GCATGC	1 cut(s)	1102
PciI	ACATGT	1 cut(s)	1247
PcsI	WCGNNNNNNNCGW	1 cut(s)	1430
PctI	GAATGC	4 cut(s)	481, 732, 946, 1761
PdmI	GAANNNNTTC	2 cut(s)	530, 1590
PfeI	GAWTC	7 cut(s)	1112, 1311, 1490, 1603, 1966, 2161, 2282
PflFI	GACNNNGTC	1 cut(s)	1219
PflMI	CCANNNNNTGG	1 cut(s)	1122
PfoI	TCCNGGA	1 cut(s)	1933
PkrI	GCNGC	9 cut(s)	583, 714, 1064, 1129, 1264, 1504, 1729, 1760, 1795
PleI	GAGTC	3 cut(s)	170, 637, 1982
PluTI	GGCGCC	1 cut(s)	1678
PpsI	GAGTC	3 cut(s)	170, 637, 1982
PscI	ACATGT	1 cut(s)	1247
Psp124BI	GAGCTC	1 cut(s)	1744
Psp6I	CCWGG	3 cut(s)	1121, 1677, 1933
PspFI	CCCAGC	1 cut(s)	1670
PspGI	CCWGG	3 cut(s)	1121, 1677, 1933
PspN4I	GGNNCC	2 cut(s)	1676, 1818
PstNI	CAGNNNCTG	2 cut(s)	45, 1727
PsuI	RGATCY	1 cut(s)	415
PsyI	GACNNNGTC	1 cut(s)	1219
PvuII	CAGCTG	1 cut(s)	1505
RsaI	GTAC	4 cut(s)	35, 211, 308, 1355
RsaNI	GTAC	4 cut(s)	34, 210, 307, 1354
RseI	CAYNNNNRTG	4 cut(s)	986, 1231, 2133, 2304
SacI	GAGCTC	1 cut(s)	1744
SaqAI	TTAA	9 cut(s)	189, 195, 255, 1014, 1043, 1469, 1512, 1697, 2276
SatI	GCNGC	9 cut(s)	582, 713, 1063, 1128, 1263, 1503, 1728, 1759, 1794
Sau3AI	GATC	4 cut(s)	415, 762, 1437, 1654
SchI	GAGTC	3 cut(s)	170, 638, 1982
ScrFI	CCNGG	3 cut(s)	1123, 1679, 1935
SduI	GDGCHC	4 cut(s)	430, 1247, 1744, 2118
SfoI	GGCGCC	1 cut(s)	1676
SfuI	TTCGAA	2 cut(s)	534, 1314
SmiMI	CAYNNNNRTG	4 cut(s)	986, 1231, 2133, 2304
SmlI	CTYRAG	3 cut(s)	49, 1240, 2275
SmoI	CTYRAG	3 cut(s)	49, 1240, 2275
SphI	GCATGC	1 cut(s)	1102
SsiI	CCGC	9 cut(s)	6, 37, 581, 986, 1062, 1127, 1759, 2290, 2325
SspDI	GGCGCC	1 cut(s)	1674
SspMI	CTAG	4 cut(s)	615, 708, 1080, 1218
SstI	GAGCTC	1 cut(s)	1744
StyD4I	CCNGG	3 cut(s)	1121, 1677, 1933
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	4 cut(s)	17, 27, 33, 2135
TaiI	ACGT	3 cut(s)	345, 448, 2097
TaqI	TCGA	4 cut(s)	348, 534, 1314, 1488
TatI	WGTACW	1 cut(s)	1353
TauI	GCSGC	4 cut(s)	584, 1065, 1130, 1761
TfiI	GAWTC	7 cut(s)	1112, 1311, 1490, 1603, 1966, 2161, 2282
Tru1I	TTAA	9 cut(s)	189, 195, 255, 1014, 1043, 1469, 1512, 1697, 2276
Tru9I	TTAA	9 cut(s)	189, 195, 255, 1014, 1043, 1469, 1512, 1697, 2276
TscAI	CASTG	3 cut(s)	657, 2140, 2311
TseI	GCWGC	5 cut(s)	712, 1262, 1502, 1727, 1793
TspGWI	ACGGA	1 cut(s)	2180
TspRI	CASTG	3 cut(s)	657, 2140, 2311
Tth111I	GACNNNGTC	1 cut(s)	1219
Van91I	CCANNNNNTGG	1 cut(s)	1122
Vha464I	CTTAAG	1 cut(s)	2275
XapI	RAATTY	5 cut(s)	191, 900, 925, 1693, 1852
XceI	RCATGY	3 cut(s)	1102, 1251, 2122
XcmI	CCANNNNNNNNNTGG	2 cut(s)	221, 1151
XmiI	GTMKAC	1 cut(s)	1223
XmnI	GAANNNNTTC	2 cut(s)	530, 1590
XspI	CTAG	4 cut(s)	615, 708, 1080, 1218
Zsp2I	ATGCAT	1 cut(s)	1373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.