AT4G02830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013341
Physical Location & Seq
Forward (+)
1262245 .. 1264101
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02830.1

Sequence Viewer

Length: 555 bp
ATGGGTGACATCATCGGTCACAAGGATAGGCAAATATGGCCACCCTCTCATCATGTTCTTCAAGATCCATTGTTTGATCATTCCAACAAACATCAGTTGCAGAAATATGTCAAGAACCACCATCACCACGGCAACGGTGAATTTCGTCGGCCCGGGGCACCTCCTCTTAGACAAACATTTCCTTTGAACTATAATACAAGACAAAAGCACCAAAGCAATTGGCAAAGGAGTAAAGGAGAGGATCGTATGCAAGCATTTTTCTTGGTTACACCGGGCCGTACAACTTCTGGCACCGGAGTTTTTCTTCCAGCCACGGCTTCTCATCCACCCACCAAAAAAACAGCTTGCTCACCGGTGCTTCTCCCGACTCGTGTAGTTCAAGCACTCAATCTTAACATTCACAACAACGGTATCCATATTTCTCCTCGTCCAGAAATTAGAGAAAATGATTCGAAGAAGAAGAGCGAAATGTTGGCAACAACACCTATCAAGATTGAAGCAGAAAATCCTATTGATTCGCCGGAGAAACTTCTCCCCGAGGAATGGATTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

21.04

Weight (kDa)

9.67

Isoelectric Point (pI)

61.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02830 AT4G02830 AT4G02830
fragaria_vesca FvH4_2g23650
malus_domestica MD03G1266000.v1.1 MD11G1286400.v1.1
prunus_persica Prupe.8G241700_v2.0.a1
pyrus_communis pycom03g21250 pycom11g25390
rosa_chinensis RchiOBHm_Chr6g0291121
rosa_laevigata RLG00000012142
rosa_roxburghii Rroxscaffold_7G00176360
rosa_rugosa Rorug06G0217800
rosa_samantha Rh6AG328000 Rh6BG335500 Rh6CG341700 Rh6DG328900
rosa_wichuraiana Rw6G028530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 157, 290
AclWI GGATC 2 cut(s) 59, 249
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 543
AgeI ACCGGT 1 cut(s) 352
AgsI TTSAA 4 cut(s) 62, 187, 380, 497
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
AlwI GGATC 2 cut(s) 59, 249
Ama87I CYCGRG 2 cut(s) 152, 536
AoxI GGCC 3 cut(s) 38, 149, 274
ApoI RAATTY 1 cut(s) 140
AsiGI ACCGGT 1 cut(s) 352
AspS9I GGNCC 2 cut(s) 150, 274
AsuC2I CCSGG 3 cut(s) 153, 154, 273
AsuHPI GGTGA 4 cut(s) 17, 116, 149, 342
AsuII TTCGAA 1 cut(s) 452
AvaI CYCGRG 2 cut(s) 152, 536
BaeGI GKGCMC 1 cut(s) 160
BaeI ACNNNNGTAYC 2 cut(s) 394, 427
BalI TGGCCA 1 cut(s) 40
BanI GGYRCC 2 cut(s) 157, 290
BauI CACGAG 1 cut(s) 369
BccI CCATC 1 cut(s) 129
BceAI ACGGC 3 cut(s) 145, 261, 330
BciVI GTATCC 1 cut(s) 422
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 3 cut(s) 153, 154, 273
BfuI GTATCC 1 cut(s) 422
Bme1390I CCNGG 3 cut(s) 153, 154, 273
BmeT110I CYCGRG 2 cut(s) 152, 536
BmgT120I GGNCC 2 cut(s) 150, 274
BmiI GGNNCC 2 cut(s) 159, 292
BmrFI CCNGG 3 cut(s) 153, 154, 273
Bpu14I TTCGAA 1 cut(s) 452
BpuMI CCSGG 3 cut(s) 153, 154, 273
BsaJI CCNNGG 5 cut(s) 127, 152, 153, 312, 537
BsaWI WCCGGW 2 cut(s) 293, 352
Bsc4I CCNNNNNNNGG 1 cut(s) 543
Bse118I RCCGGY 1 cut(s) 352
BseDI CCNNGG 5 cut(s) 127, 152, 153, 312, 537
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 543
BseRI GAGGAG 2 cut(s) 153, 414
BseSI GKGCMC 1 cut(s) 160
BshFI GGCC 3 cut(s) 40, 151, 276
BshNI GGYRCC 2 cut(s) 157, 290
BshTI ACCGGT 1 cut(s) 352
BsiHKCI CYCGRG 2 cut(s) 152, 536
BsiSI CCGG 5 cut(s) 153, 272, 294, 353, 521
BslI CCNNNNNNNGG 1 cut(s) 543
BsnI GGCC 3 cut(s) 40, 151, 276
BsoBI CYCGRG 2 cut(s) 152, 536
Bsp119I TTCGAA 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 3 cut(s) 64, 76, 241
BspANI GGCC 3 cut(s) 40, 151, 276
BspLI GGNNCC 2 cut(s) 159, 292
BspPI GGATC 2 cut(s) 59, 249
BspQI GCTCTTC 1 cut(s) 455
BspT104I TTCGAA 1 cut(s) 452
BspT107I GGYRCC 2 cut(s) 157, 290
BsrFI RCCGGY 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 352
BssECI CCNNGG 5 cut(s) 127, 152, 153, 312, 537
BssMI GATC 3 cut(s) 64, 76, 241
BssSI CACGAG 1 cut(s) 369
Bst2BI CACGAG 1 cut(s) 369
Bst4CI ACNGT 2 cut(s) 137, 410
Bst6I CTCTTC 1 cut(s) 455
BstBI TTCGAA 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 252, 346
BstDEI CTNAG 1 cut(s) 167
BstDSI CCRYGG 2 cut(s) 127, 312
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 3 cut(s) 67, 79, 244
BstMBI GATC 3 cut(s) 64, 76, 241
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstSCI CCNGG 3 cut(s) 151, 152, 271
BstSLI GKGCMC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 3 cut(s) 40, 151, 276
BtgI CCRYGG 2 cut(s) 127, 312
BtsCI GGATG 1 cut(s) 322
Cac8I GCNNGC 2 cut(s) 252, 346
Cfr10I RCCGGY 1 cut(s) 352
Cfr13I GGNCC 2 cut(s) 150, 274
Cfr9I CCCGGG 1 cut(s) 152
Csp6I GTAC 1 cut(s) 279
CspAI ACCGGT 1 cut(s) 352
CviAII CATG 1 cut(s) 53
CviJI RGCY 6 cut(s) 40, 151, 276, 311, 317, 344
CviKI_1 RGCY 6 cut(s) 40, 151, 276, 311, 317, 344
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 1 cut(s) 167
DpnI GATC 3 cut(s) 66, 78, 243
DpnII GATC 3 cut(s) 64, 76, 241
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Eco88I CYCGRG 2 cut(s) 152, 536
FaeI CATG 1 cut(s) 56
FaiI YATR 6 cut(s) 37, 54, 108, 192, 248, 417
FatI CATG 1 cut(s) 52
FbaI TGATCA 1 cut(s) 76
FokI GGATG 1 cut(s) 309
HaeIII GGCC 3 cut(s) 40, 151, 276
HapII CCGG 5 cut(s) 153, 272, 294, 353, 521
Hin1II CATG 1 cut(s) 56
HinfI GANTC 3 cut(s) 367, 449, 515
HpaII CCGG 5 cut(s) 153, 272, 294, 353, 521
HphI GGTGA 4 cut(s) 17, 116, 149, 342
Hpy188III TCNNGA 5 cut(s) 62, 112, 364, 431, 490
Hpy99I CGWCG 1 cut(s) 150
HpyCH4III ACNGT 2 cut(s) 137, 410
HpyCH4V TGCA 2 cut(s) 100, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 3 cut(s) 64, 76, 241
LguI GCTCTTC 1 cut(s) 455
LpnPI CCDG 8 cut(s) 166, 273, 285, 307, 321, 366, 444, 534
MaeIII GTNAC 3 cut(s) 5, 17, 265
MalI GATC 3 cut(s) 66, 78, 243
MboI GATC 3 cut(s) 64, 76, 241
MboII GAAGA 5 cut(s) 50, 296, 466, 469, 472
MfeI CAATTG 1 cut(s) 217
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 160
MlsI TGGCCA 1 cut(s) 40
MluCI AATT 3 cut(s) 140, 217, 435
MluNI TGGCCA 1 cut(s) 40
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 6 cut(s) 55, 171, 174, 232, 435, 532
Mox20I TGGCCA 1 cut(s) 40
MscI TGGCCA 1 cut(s) 40
MseI TTAA 1 cut(s) 393
Msp20I TGGCCA 1 cut(s) 40
MspI CCGG 5 cut(s) 153, 272, 294, 353, 521
MspR9I CCNGG 3 cut(s) 153, 154, 273
MunI CAATTG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 3 cut(s) 153, 154, 273
NdeII GATC 3 cut(s) 64, 76, 241
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 2 cut(s) 159, 292
NmuCI GTSAC 2 cut(s) 5, 17
NspV TTCGAA 1 cut(s) 452
PciSI GCTCTTC 1 cut(s) 455
PfeI GAWTC 2 cut(s) 449, 515
PinAI ACCGGT 1 cut(s) 352
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 159, 292
PspPI GGNCC 2 cut(s) 150, 274
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 455
SaqAI TTAA 1 cut(s) 393
Sau3AI GATC 3 cut(s) 64, 76, 241
Sau96I GGNCC 2 cut(s) 150, 274
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 3 cut(s) 153, 154, 273
SduI GDGCHC 1 cut(s) 160
SetI ASST 3 cut(s) 163, 346, 487
SfuI TTCGAA 1 cut(s) 452
SgrAI CRCCGGYG 1 cut(s) 352
SmaI CCCGGG 1 cut(s) 154
Sse9I AATT 3 cut(s) 140, 217, 435
StyD4I CCNGG 3 cut(s) 151, 152, 271
TaaI ACNGT 2 cut(s) 137, 410
TaqI TCGA 1 cut(s) 452
TaqII GACCGA 1 cut(s) 5
TasI AATT 3 cut(s) 140, 217, 435
TfiI GAWTC 2 cut(s) 449, 515
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TseFI GTSAC 2 cut(s) 5, 17
Tsp45I GTSAC 2 cut(s) 5, 17
TspMI CCCGGG 1 cut(s) 152
XapI RAATTY 1 cut(s) 140
XmaI CCCGGG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.