Rroxscaffold_7G00176360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013341
Physical Location & Seq
Reverse (-)
15829872 .. 15831889
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176360.1

Sequence Viewer

Length: 618 bp
ATGGCTTCTCCTGAGAAAAGAGGAGGAGAGGTTGGTTTTGATTTTGAAGAAGGAATGTCGTGCCTTCCCTCGCCAGTTGTTCATGAAGCTTTCGACACAAAGGCATATTTGGGACGGGCAGAGCAGCACCTCCACCACAACCAACATAATTACCAAGATCAACTGAATCCAAAATTTTGTAGCTCAAGGTCATTGTTTTCGCCACATTATGTCACTAGATCGAAAGATATAAAGAATTGGGTATCTGGAGGACATGGAATGCAAGCTATTTTCCTAGATTCTTCCCAAAAATCACGTGGCGGCACTGGCGTTTTTCTTCCACAGAGAGCCGGCACCAACTTCTACTCGAAGAAGAAACCAGCTTGTGCTCCGGTTCTGTTGCCCGACCGTGTGATTCAAGCTCTCAATCTGAATGTTCATGCACTTGGCCTGCACATTTCACCCAAAGATCGTCATCGGAAACGATTTAGATCAGGTCACAAAGATGATACTCAAGATTGTATGTCACCTCGAAATAAAATGAGTGGGAGCAAGGTGGATGAACAATGCTTCATTATTTCCGAAAATCAAACCAACTCTTCCCTGGAGTCATGTCTTCCAAAGGAGTGGACCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.09

Weight (kDa)

9.03

Isoelectric Point (pI)

71.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02830 AT4G02830 AT4G02830
fragaria_vesca FvH4_2g23650
malus_domestica MD03G1266000.v1.1 MD11G1286400.v1.1
prunus_persica Prupe.8G241700_v2.0.a1
pyrus_communis pycom03g21250 pycom11g25390
rosa_chinensis RchiOBHm_Chr6g0291121
rosa_laevigata RLG00000012142
rosa_roxburghii Rroxscaffold_7G00176360
rosa_rugosa Rorug06G0217800
rosa_samantha Rh6AG328000 Rh6BG335500 Rh6CG341700 Rh6DG328900
rosa_wichuraiana Rw6G028530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AciI CCGC 1 cut(s) 300
AcsI RAATTY 1 cut(s) 173
AcvI CACGTG 1 cut(s) 296
AgsI TTSAA 2 cut(s) 47, 398
AjnI CCWGG 1 cut(s) 582
AluBI AGCT 5 cut(s) 89, 183, 266, 362, 401
AluI AGCT 5 cut(s) 89, 183, 266, 362, 401
Alw21I GWGCWC 1 cut(s) 370
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 609
AsuHPI GGTGA 2 cut(s) 432, 498
AvaII GGWCC 1 cut(s) 609
BanI GGYRCC 1 cut(s) 332
BbrPI CACGTG 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 587
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 584
BfaI CTAG 3 cut(s) 216, 275, 616
BisI GCNGC 2 cut(s) 125, 301
BlsI GCNGC 2 cut(s) 126, 302
Bme1390I CCNGG 1 cut(s) 584
Bme18I GGWCC 1 cut(s) 609
BmgT120I GGNCC 1 cut(s) 609
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 584
BpiI GAAGAC 1 cut(s) 587
BpmI CTGGAG 2 cut(s) 267, 605
BpuEI CTTGAG 2 cut(s) 169, 477
BsaAI YACGTR 1 cut(s) 296
BsaBI GATNNNNATC 2 cut(s) 453, 469
BsaJI CCNNGG 1 cut(s) 582
BsaWI WCCGGW 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 74, 310
Bse8I GATNNNNATC 2 cut(s) 453, 469
BseBI CCWGG 1 cut(s) 584
BseDI CCNNGG 1 cut(s) 582
BseGI GGATG 1 cut(s) 544
BseJI GATNNNNATC 2 cut(s) 453, 469
BseNI ACTGG 2 cut(s) 74, 310
BseRI GAGGAG 2 cut(s) 36, 39
BseXI GCAGC 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 416
Bsh1285I CGRYCG 1 cut(s) 388
BshFI GGCC 1 cut(s) 429
BshNI GGYRCC 1 cut(s) 332
BsiEI CGRYCG 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 370
BsiSI CCGG 2 cut(s) 330, 371
BslFI GGGAC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 4 cut(s) 157, 218, 448, 470
BspACI CCGC 1 cut(s) 300
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 1 cut(s) 4
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 332
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 2 cut(s) 74, 310
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 582
BssMI GATC 4 cut(s) 157, 218, 448, 470
Bst2UI CCWGG 1 cut(s) 584
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 1 cut(s) 583
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 3 cut(s) 264, 331, 431
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 544
BstKTI GATC 4 cut(s) 160, 221, 451, 473
BstMBI GATC 4 cut(s) 157, 218, 448, 470
BstMCI CGRYCG 1 cut(s) 388
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstNI CCWGG 1 cut(s) 584
BstSCI CCNGG 1 cut(s) 582
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 587
BstXI CCANNNNNNTGG 1 cut(s) 606
BsuRI GGCC 1 cut(s) 429
BtsCI GGATG 1 cut(s) 544
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 3 cut(s) 264, 331, 431
CciI TCATGA 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 609
CviAII CATG 4 cut(s) 83, 254, 419, 591
CviJI RGCY 8 cut(s) 5, 89, 183, 266, 329, 362, 401, 429
CviKI_1 RGCY 8 cut(s) 5, 89, 183, 266, 329, 362, 401, 429
DdeI CTNAG 1 cut(s) 12
DpnI GATC 4 cut(s) 159, 220, 450, 472
DpnII GATC 4 cut(s) 157, 218, 448, 470
Eam1104I CTCTTC 1 cut(s) 583
EarI CTCTTC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 609
Eco72I CACGTG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 582
FaeI CATG 4 cut(s) 86, 257, 422, 594
FaiI YATR 9 cut(s) 84, 106, 147, 210, 230, 255, 420, 503, 592
FaqI GGGAC 1 cut(s) 126
FatI CATG 4 cut(s) 82, 253, 418, 590
Fnu4HI GCNGC 2 cut(s) 125, 301
FokI GGATG 1 cut(s) 551
Fsp4HI GCNGC 2 cut(s) 125, 301
FspBI CTAG 3 cut(s) 216, 275, 616
GluI GCNGC 2 cut(s) 125, 301
GsuI CTGGAG 2 cut(s) 267, 605
HaeIII GGCC 1 cut(s) 429
HapII CCGG 2 cut(s) 330, 371
Hin1II CATG 4 cut(s) 86, 257, 422, 594
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 4 cut(s) 166, 278, 394, 587
HpaII CCGG 2 cut(s) 330, 371
HphI GGTGA 2 cut(s) 432, 498
Hpy166II GTNNAC 1 cut(s) 609
Hpy188I TCNGA 3 cut(s) 411, 459, 562
Hpy188III TCNNGA 4 cut(s) 11, 83, 246, 494
Hpy8I GTNNAC 1 cut(s) 609
HpyAV CCTTC 2 cut(s) 44, 74
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 3 cut(s) 262, 422, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 4 cut(s) 86, 257, 422, 594
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Kzo9I GATC 4 cut(s) 157, 218, 448, 470
LmnI GCTCC 2 cut(s) 373, 528
Lsp1109I GCAGC 1 cut(s) 136
MaeI CTAG 3 cut(s) 216, 275, 616
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 3 cut(s) 211, 476, 504
MalI GATC 4 cut(s) 159, 220, 450, 472
MboI GATC 4 cut(s) 157, 218, 448, 470
MboII GAAGA 7 cut(s) 59, 273, 308, 361, 364, 570, 587
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 3 cut(s) 148, 173, 235
MlyI GAGTC 1 cut(s) 596
MnlI CCTC 7 cut(s) 14, 17, 22, 79, 140, 242, 519
MroNI GCCGGC 1 cut(s) 329
MslI CAYNNNNRTG 1 cut(s) 483
MspI CCGG 2 cut(s) 330, 371
MspR9I CCNGG 1 cut(s) 584
Mva1269I GAATGC 1 cut(s) 264
MvaI CCWGG 1 cut(s) 584
MwoI GCNNNNNNNGC 1 cut(s) 306
NaeI GCCGGC 1 cut(s) 331
NdeII GATC 4 cut(s) 157, 218, 448, 470
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 4 cut(s) 86, 257, 422, 594
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 3 cut(s) 211, 476, 504
PagI TCATGA 1 cut(s) 82
PctI GAATGC 1 cut(s) 264
PdiI GCCGGC 1 cut(s) 331
PfeI GAWTC 3 cut(s) 166, 278, 394
PkrI GCNGC 2 cut(s) 126, 302
PleI GAGTC 1 cut(s) 595
PmaCI CACGTG 1 cut(s) 296
PmlI CACGTG 1 cut(s) 296
PpsI GAGTC 1 cut(s) 595
Ppu21I YACGTR 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 582
PspCI CACGTG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 582
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 609
RseI CAYNNNNRTG 1 cut(s) 483
SatI GCNGC 2 cut(s) 125, 301
Sau3AI GATC 4 cut(s) 157, 218, 448, 470
Sau96I GGNCC 1 cut(s) 609
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 1 cut(s) 584
SduI GDGCHC 1 cut(s) 370
SinI GGWCC 1 cut(s) 609
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 2 cut(s) 184, 492
SmoI CTYRAG 2 cut(s) 184, 492
Sse9I AATT 3 cut(s) 148, 173, 235
SsiI CCGC 1 cut(s) 300
SspMI CTAG 3 cut(s) 216, 275, 616
StyD4I CCNGG 1 cut(s) 582
TaaI ACNGT 1 cut(s) 389
TaiI ACGT 1 cut(s) 298
TaqI TCGA 4 cut(s) 93, 221, 347, 511
TasI AATT 3 cut(s) 148, 173, 235
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 3 cut(s) 166, 278, 394
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 3 cut(s) 211, 476, 504
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 3 cut(s) 211, 476, 504
TspDTI ATGAA 5 cut(s) 71, 99, 407, 541, 555
TspRI CASTG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 609
XapI RAATTY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 2 cut(s) 293, 580
XspI CTAG 3 cut(s) 216, 275, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.