Rh6AG328000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013341
Physical Location & Seq
Forward (+)
53017964 .. 53020319
2356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG328000.1

Sequence Viewer

Length: 639 bp
ATGTCTCTTTCTGTCTCCTCCATGGCTTCTCCTGAGAAAGGAGGAGGAGAGGTTGGTTTTGATTTTGAAGAAGGAATGTCGTGGCTTCCCTCGCCAGTTGTTCATGAAGCTTTCGACACAAAGGCATATTTGGGACGGGCAGAGCAACACCTCCACCACAACCAACATAATTACCAAGATCAACTGAATCCAAAATTTTGTAGCTCAAGGTCATCGTTTTCGCCACATTATGTTACTAGACCGAAAGATATAAAGAACTGGGTATCTGGAGGACATGGAATGCAAGCTGTTTTCCTAGATTCTTCCCATAAATCACGTGGCGGCACTGGCGTTTTTCTTCCACAGAGAGCCGGCACCAACTTCTACTCGAAGAAGAAACCAGCTTGTGCTCCAGTTCTGTTGCCCGACCGTGTGATTCAAGCTCTCAATCTGAATGTTCATGCACTTGGCCTGCACATTTCACCCAAAAATCGTCATCGGAAACGATTTAAATCAGGTCACGAAGATGATACTCAAGATTGTATGTCACCTCGAAATAAAATGAGTGGGAGCAAGGAGGATGAAAAATGCTACATTATTTCCGAAAATCAAACCAACTCTTCTCCGGAGTCATGTCTTCCAAAAGAGTGGACCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.75

Weight (kDa)

8.76

Isoelectric Point (pI)

71.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02830 AT4G02830 AT4G02830
fragaria_vesca FvH4_2g23650
malus_domestica MD03G1266000.v1.1 MD11G1286400.v1.1
prunus_persica Prupe.8G241700_v2.0.a1
pyrus_communis pycom03g21250 pycom11g25390
rosa_chinensis RchiOBHm_Chr6g0291121
rosa_laevigata RLG00000012142
rosa_roxburghii Rroxscaffold_7G00176360
rosa_rugosa Rorug06G0217800
rosa_samantha Rh6AG328000 Rh6BG335500 Rh6CG341700 Rh6DG328900
rosa_wichuraiana Rw6G028530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AccIII TCCGGA 1 cut(s) 604
AciI CCGC 1 cut(s) 321
AcsI RAATTY 1 cut(s) 194
AcvI CACGTG 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 2 cut(s) 68, 419
AluBI AGCT 5 cut(s) 110, 204, 287, 383, 422
AluI AGCT 5 cut(s) 110, 204, 287, 383, 422
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 2 cut(s) 9, 19
Aor13HI TCCGGA 1 cut(s) 604
AoxI GGCC 1 cut(s) 448
ApoI RAATTY 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 630
AsuHPI GGTGA 2 cut(s) 453, 519
AvaII GGWCC 1 cut(s) 630
BanI GGYRCC 1 cut(s) 353
BbrPI CACGTG 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 608
Bbv12I GWGCWC 1 cut(s) 391
BcoDI GTCTC 2 cut(s) 9, 19
BfaI CTAG 3 cut(s) 237, 296, 637
BisI GCNGC 1 cut(s) 322
BlsI GCNGC 1 cut(s) 323
Bme18I GGWCC 1 cut(s) 630
BmgT120I GGNCC 1 cut(s) 630
BmiI GGNNCC 1 cut(s) 355
BmrI ACTGGG 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 608
BpmI CTGGAG 2 cut(s) 288, 375
BpuEI CTTGAG 2 cut(s) 190, 498
BsaAI YACGTR 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 490
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 604
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 4 cut(s) 95, 263, 331, 392
Bse8I GATNNNNATC 1 cut(s) 490
BseAI TCCGGA 1 cut(s) 604
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 565
BseJI GATNNNNATC 1 cut(s) 490
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 4 cut(s) 95, 263, 331, 392
BseRI GAGGAG 3 cut(s) 7, 57, 60
BsgI GTGCAG 1 cut(s) 437
Bsh1285I CGRYCG 1 cut(s) 409
BshFI GGCC 1 cut(s) 450
BshNI GGYRCC 1 cut(s) 353
BsiEI CGRYCG 1 cut(s) 409
BsiHKAI GWGCWC 1 cut(s) 391
BsiSI CCGG 2 cut(s) 351, 605
BslFI GGGAC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 2 cut(s) 9, 19
BsmFI GGGAC 1 cut(s) 147
BsmI GAATGC 1 cut(s) 285
BsnI GGCC 1 cut(s) 450
Bsp1286I GDGCHC 1 cut(s) 391
Bsp13I TCCGGA 1 cut(s) 604
Bsp143I GATC 1 cut(s) 178
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 1 cut(s) 321
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 1 cut(s) 25
BspEI TCCGGA 1 cut(s) 604
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 353
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 4 cut(s) 95, 263, 331, 392
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 410
Bst6I CTCTTC 1 cut(s) 604
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 3 cut(s) 285, 352, 452
BstDEI CTNAG 1 cut(s) 33
BstDSI CCRYGG 1 cut(s) 21
BstENI CCTNNNNNAGG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 565
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 9, 19
BstMBI GATC 1 cut(s) 178
BstMCI CGRYCG 1 cut(s) 409
BstMWI GCNNNNNNNGC 2 cut(s) 91, 327
BstV2I GAAGAC 1 cut(s) 608
BstXI CCANNNNNNTGG 1 cut(s) 627
BsuRI GGCC 1 cut(s) 450
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 565
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 3 cut(s) 285, 352, 452
CciI TCATGA 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 630
CviAII CATG 5 cut(s) 22, 104, 275, 440, 612
CviJI RGCY 9 cut(s) 26, 85, 110, 204, 287, 350, 383, 422, 450
CviKI_1 RGCY 9 cut(s) 26, 85, 110, 204, 287, 350, 383, 422, 450
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
DraI TTTAAA 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 604
EarI CTCTTC 1 cut(s) 604
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 630
Eco72I CACGTG 1 cut(s) 317
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 5 cut(s) 25, 107, 278, 443, 615
FaqI GGGAC 1 cut(s) 147
FatI CATG 5 cut(s) 21, 103, 274, 439, 611
Fnu4HI GCNGC 1 cut(s) 322
FokI GGATG 1 cut(s) 572
Fsp4HI GCNGC 1 cut(s) 322
FspBI CTAG 3 cut(s) 237, 296, 637
GluI GCNGC 1 cut(s) 322
GsuI CTGGAG 2 cut(s) 288, 375
HaeIII GGCC 1 cut(s) 450
HapII CCGG 2 cut(s) 351, 605
Hin1II CATG 5 cut(s) 25, 107, 278, 443, 615
HindIII AAGCTT 1 cut(s) 108
HinfI GANTC 4 cut(s) 187, 299, 415, 608
HpaII CCGG 2 cut(s) 351, 605
HphI GGTGA 2 cut(s) 453, 519
Hpy166II GTNNAC 1 cut(s) 630
Hpy188I TCNGA 3 cut(s) 432, 480, 583
Hpy188III TCNNGA 6 cut(s) 32, 104, 267, 500, 515, 605
Hpy8I GTNNAC 1 cut(s) 630
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 3 cut(s) 283, 443, 454
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 327
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 5 cut(s) 25, 107, 278, 443, 615
Kpn2I TCCGGA 1 cut(s) 604
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 2 cut(s) 394, 549
MaeI CTAG 3 cut(s) 237, 296, 637
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 3 cut(s) 232, 497, 525
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 8 cut(s) 80, 294, 329, 382, 385, 515, 591, 608
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 2 cut(s) 169, 194
MlyI GAGTC 1 cut(s) 617
MnlI CCTC 9 cut(s) 28, 35, 38, 43, 100, 161, 263, 540, 550
MroI TCCGGA 1 cut(s) 604
MroNI GCCGGC 1 cut(s) 350
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 1 cut(s) 504
MspI CCGG 2 cut(s) 351, 605
Mva1269I GAATGC 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 91, 327
NaeI GCCGGC 1 cut(s) 352
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 178
NgoMIV GCCGGC 1 cut(s) 350
NlaIII CATG 5 cut(s) 25, 107, 278, 443, 615
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 2 cut(s) 497, 525
PagI TCATGA 1 cut(s) 103
PctI GAATGC 1 cut(s) 285
PdiI GCCGGC 1 cut(s) 352
PfeI GAWTC 3 cut(s) 187, 299, 415
PkrI GCNGC 1 cut(s) 323
PleI GAGTC 1 cut(s) 616
PmaCI CACGTG 1 cut(s) 317
PmlI CACGTG 1 cut(s) 317
PpsI GAGTC 1 cut(s) 616
Ppu21I YACGTR 1 cut(s) 317
PspCI CACGTG 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 630
RseI CAYNNNNRTG 1 cut(s) 504
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 1 cut(s) 322
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 1 cut(s) 630
SchI GAGTC 1 cut(s) 617
SduI GDGCHC 1 cut(s) 391
SinI GGWCC 1 cut(s) 630
SmiI ATTTAAAT 1 cut(s) 490
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 2 cut(s) 205, 513
SmoI CTYRAG 2 cut(s) 205, 513
Sse9I AATT 2 cut(s) 169, 194
SsiI CCGC 1 cut(s) 321
SspMI CTAG 3 cut(s) 237, 296, 637
StyI CCWWGG 1 cut(s) 21
SwaI ATTTAAAT 1 cut(s) 490
TaaI ACNGT 1 cut(s) 410
TaiI ACGT 1 cut(s) 319
TaqI TCGA 3 cut(s) 114, 368, 532
TaqII GACCGA 1 cut(s) 256
TasI AATT 2 cut(s) 169, 194
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 3 cut(s) 187, 299, 415
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 2 cut(s) 497, 525
Tsp45I GTSAC 2 cut(s) 497, 525
TspDTI ATGAA 4 cut(s) 92, 120, 428, 576
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 630
XagI CCTNNNNNAGG 1 cut(s) 36
XapI RAATTY 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XspI CTAG 3 cut(s) 237, 296, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.