Rh6BG335500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013341
Physical Location & Seq
Forward (+)
56885952 .. 56888015
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG335500.1

Sequence Viewer

Length: 444 bp
ATGGCTTCTCCTGAGAAAGGAGGAGGAGAGGTTGGTTTTGATTTTGAAGAAGGAATGTCGTGGCTTCCCTCGCCAGTTGTTCATGAAGCTTTCGACACAAAGGCATATTTGGGACGGGCAGAGCAGCACCTCCACCACAACCAACATAATTACCAAGATCAACTGAATCCAAAATTTTGTAGCTCAAGGTCATCGTTTTCGCCACATTATGTCACTAGACCGAAAGATATAAAGAATTGGGTCTCTGGAGGACATGGAATGCAAGCTGTTTTCCTAGATTCTTCCCATAAATCACGTGGCGGCACGGGCGTTTTTCTCCCACAAAGAGCCGGCACCAACTTCTACTCGAAGAAGAAACCAGGTGCCAATATTTGTCGAAAATTTGACCATATTCCAGGTGTTCATGCTTTAGACTTGACGGTTCTAAAATTTACATTATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.35

Weight (kDa)

9.15

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02830 AT4G02830 AT4G02830
fragaria_vesca FvH4_2g23650
malus_domestica MD03G1266000.v1.1 MD11G1286400.v1.1
prunus_persica Prupe.8G241700_v2.0.a1
pyrus_communis pycom03g21250 pycom11g25390
rosa_chinensis RchiOBHm_Chr6g0291121
rosa_laevigata RLG00000012142
rosa_roxburghii Rroxscaffold_7G00176360
rosa_rugosa Rorug06G0217800
rosa_samantha Rh6AG328000 Rh6BG335500 Rh6CG341700 Rh6DG328900
rosa_wichuraiana Rw6G028530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 332, 362
AciI CCGC 1 cut(s) 300
AcsI RAATTY 3 cut(s) 173, 380, 428
AcvI CACGTG 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 2 cut(s) 358, 394
AluBI AGCT 3 cut(s) 89, 183, 266
AluI AGCT 3 cut(s) 89, 183, 266
Alw26I GTCTC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 3 cut(s) 173, 380, 428
BanI GGYRCC 2 cut(s) 332, 362
BbrPI CACGTG 1 cut(s) 296
BbvI GCAGC 1 cut(s) 136
BciT130I CCWGG 2 cut(s) 360, 396
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 2 cut(s) 216, 275
BisI GCNGC 2 cut(s) 125, 301
BlsI GCNGC 2 cut(s) 126, 302
Bme1390I CCNGG 2 cut(s) 360, 396
BmiI GGNNCC 2 cut(s) 334, 364
BmrFI CCNGG 2 cut(s) 360, 396
BpmI CTGGAG 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 169
BsaAI YACGTR 1 cut(s) 296
BsaI GGTCTC 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 74
BseBI CCWGG 2 cut(s) 360, 396
BseLI CCNNNNNNNGG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 74
BseRI GAGGAG 2 cut(s) 36, 39
BseXI GCAGC 1 cut(s) 136
BshNI GGYRCC 2 cut(s) 332, 362
BsiSI CCGG 1 cut(s) 330
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 264
Bso31I GGTCTC 1 cut(s) 247
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 300
BspCNI CTCAG 1 cut(s) 4
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 334, 364
BspT107I GGYRCC 2 cut(s) 332, 362
BspTNI GGTCTC 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 329
BssMI GATC 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 360, 396
Bst4CI ACNGT 1 cut(s) 421
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 264, 331
BstDEI CTNAG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 15
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 70, 306
BstNI CCWGG 2 cut(s) 360, 396
BstSCI CCNGG 2 cut(s) 358, 394
BstV1I GCAGC 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 264, 331
CciI TCATGA 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 329
CsiI ACCWGGT 1 cut(s) 358
CviAII CATG 3 cut(s) 83, 254, 404
CviJI RGCY 6 cut(s) 5, 64, 89, 183, 266, 329
CviKI_1 RGCY 6 cut(s) 5, 64, 89, 183, 266, 329
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 247
Eco72I CACGTG 1 cut(s) 296
EcoNI CCTNNNNNAGG 1 cut(s) 15
EcoRII CCWGG 2 cut(s) 358, 394
FaeI CATG 3 cut(s) 86, 257, 407
FaqI GGGAC 1 cut(s) 126
FatI CATG 3 cut(s) 82, 253, 403
Fnu4HI GCNGC 2 cut(s) 125, 301
Fsp4HI GCNGC 2 cut(s) 125, 301
FspBI CTAG 2 cut(s) 216, 275
GluI GCNGC 2 cut(s) 125, 301
GsuI CTGGAG 1 cut(s) 267
HapII CCGG 1 cut(s) 330
Hin1II CATG 3 cut(s) 86, 257, 407
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 2 cut(s) 166, 278
HpaII CCGG 1 cut(s) 330
Hpy188III TCNNGA 3 cut(s) 11, 83, 246
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 306
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 3 cut(s) 86, 257, 407
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 8 cut(s) 24, 87, 231, 343, 345, 372, 381, 408
Lsp1109I GCAGC 1 cut(s) 136
MabI ACCWGGT 1 cut(s) 358
MaeI CTAG 2 cut(s) 216, 275
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 4 cut(s) 59, 273, 361, 364
MluCI AATT 5 cut(s) 148, 173, 235, 380, 428
MnlI CCTC 6 cut(s) 14, 17, 22, 79, 140, 242
MroNI GCCGGC 1 cut(s) 329
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 2 cut(s) 360, 396
Mva1269I GAATGC 1 cut(s) 264
MvaI CCWGG 2 cut(s) 360, 396
MwoI GCNNNNNNNGC 2 cut(s) 70, 306
NaeI GCCGGC 1 cut(s) 331
NdeII GATC 1 cut(s) 157
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 3 cut(s) 86, 257, 407
NlaIV GGNNCC 2 cut(s) 334, 364
NmuCI GTSAC 1 cut(s) 211
PagI TCATGA 1 cut(s) 82
PctI GAATGC 1 cut(s) 264
PdiI GCCGGC 1 cut(s) 331
PfeI GAWTC 2 cut(s) 166, 278
PkrI GCNGC 2 cut(s) 126, 302
PmaCI CACGTG 1 cut(s) 296
PmlI CACGTG 1 cut(s) 296
Ppu21I YACGTR 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 358, 394
PspCI CACGTG 1 cut(s) 296
PspGI CCWGG 2 cut(s) 358, 394
PspN4I GGNNCC 2 cut(s) 334, 364
SatI GCNGC 2 cut(s) 125, 301
Sau3AI GATC 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 360, 396
SetI ASST 9 cut(s) 33, 91, 132, 185, 191, 268, 298, 364, 400
SexAI ACCWGGT 1 cut(s) 358
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 5 cut(s) 148, 173, 235, 380, 428
SsiI CCGC 1 cut(s) 300
SspI AATATT 1 cut(s) 370
SspMI CTAG 2 cut(s) 216, 275
StyD4I CCNGG 2 cut(s) 358, 394
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 1 cut(s) 298
TaqI TCGA 3 cut(s) 93, 347, 376
TaqII GACCGA 1 cut(s) 235
TasI AATT 5 cut(s) 148, 173, 235, 380, 428
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 2 cut(s) 166, 278
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 3 cut(s) 71, 99, 392
XagI CCTNNNNNAGG 1 cut(s) 15
XapI RAATTY 3 cut(s) 173, 380, 428
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XspI CTAG 2 cut(s) 216, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.