FvH4_2g23650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013341
Physical Location & Seq
Forward (+)
19343389 .. 19345607
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23650.t1

Sequence Viewer

Length: 654 bp
ATGTCTCTTTCTCTCTCCTCCATGGCTTCTCCTGAGAAAAGAGGACGAGAGGTTAGTGTTTATTTTGCAGAAGGAATGCCGTGGCTTCCCTCGCAAGTTGTTCATGATCATGAAGCTTTCGACAAAAAGGCACATTTGGGACTGGCAGAGCAGCACCTCCACCACCACAACCGCCACAATTACCATGATCAACTGAGGAGTCCAAAATTTTATGGTTCAAAATCACTGCTTTCGCCACATTATATAAGTAGAACGAAAGGTGTCAAGAATTGGGTATCCGGAGGACATGGAATGCAAGCTGTTTTCCTAGATTCTGCCCAAAAATCACGGGGCGGCACCGGCGTTTTCCTTCCACAAAGAGCCGGTACCGACTTCCACTCGAAGAAGAAACCAGTTTGTGCTCCGGTTCTGTTGCCTAACCGTGTGATTCAAGCTCTCAACCTGAATGTTCATGCACTTGGCCTGCACATTTCGCCTAAAGATCGCCATCGGAAACGGTTTAGATCAGGTCACGAAGATGATGATAGCCAAGATTGTATGTCGCCACGAGATAAAATCAGTGGAAGCAAGGTGGATGAACAATGCTACATTATTTCCGAAAATCAAACCAACTCTTCTCCGGAATTATGTCTTCCAAATGAATGGACTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.48

Weight (kDa)

9.16

Isoelectric Point (pI)

60.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02830 AT4G02830 AT4G02830
fragaria_vesca FvH4_2g23650
malus_domestica MD03G1266000.v1.1 MD11G1286400.v1.1
prunus_persica Prupe.8G241700_v2.0.a1
pyrus_communis pycom03g21250 pycom11g25390
rosa_chinensis RchiOBHm_Chr6g0291121
rosa_laevigata RLG00000012142
rosa_roxburghii Rroxscaffold_7G00176360
rosa_rugosa Rorug06G0217800
rosa_samantha Rh6AG328000 Rh6BG335500 Rh6CG341700 Rh6DG328900
rosa_wichuraiana Rw6G028530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 2 cut(s) 335, 365
AccIII TCCGGA 2 cut(s) 278, 619
AciI CCGC 2 cut(s) 172, 333
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 1 cut(s) 367
AgsI TTSAA 2 cut(s) 219, 431
AluBI AGCT 3 cut(s) 116, 299, 434
AluI AGCT 3 cut(s) 116, 299, 434
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 1 cut(s) 9
Aor13HI TCCGGA 2 cut(s) 278, 619
AoxI GGCC 1 cut(s) 460
ApeKI GCWGC 1 cut(s) 151
ApoI RAATTY 1 cut(s) 206
Asp718I GGTACC 1 cut(s) 365
BanI GGYRCC 2 cut(s) 335, 365
BauI CACGAG 1 cut(s) 546
BbsI GAAGAC 1 cut(s) 623
Bbv12I GWGCWC 1 cut(s) 403
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 495
BceAI ACGGC 1 cut(s) 64
BciVI GTATCC 1 cut(s) 286
BclI TGATCA 2 cut(s) 106, 187
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 308, 652
BfuI GTATCC 1 cut(s) 286
BisI GCNGC 2 cut(s) 152, 334
BlsI GCNGC 2 cut(s) 153, 335
BmiI GGNNCC 2 cut(s) 337, 367
BpiI GAAGAC 1 cut(s) 623
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 21, 80
BsaWI WCCGGW 3 cut(s) 278, 403, 619
Bse118I RCCGGY 2 cut(s) 338, 362
Bse1I ACTGG 2 cut(s) 147, 392
Bse8I GATNNNNATC 1 cut(s) 486
BseAI TCCGGA 2 cut(s) 278, 619
BseDI CCNNGG 2 cut(s) 21, 80
BseGI GGATG 1 cut(s) 580
BseJI GATNNNNATC 1 cut(s) 486
BseMII CTCAG 2 cut(s) 24, 185
BseNI ACTGG 2 cut(s) 147, 392
BseRI GAGGAG 2 cut(s) 7, 211
BseXI GCAGC 1 cut(s) 163
BsgI GTGCAG 1 cut(s) 449
BshFI GGCC 1 cut(s) 462
BshNI GGYRCC 2 cut(s) 335, 365
BsiHKAI GWGCWC 1 cut(s) 403
BsiSI CCGG 5 cut(s) 279, 339, 363, 404, 620
BslFI GGGAC 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 153
BsmI GAATGC 2 cut(s) 81, 297
BsnI GGCC 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 403
Bsp13I TCCGGA 2 cut(s) 278, 619
Bsp143I GATC 4 cut(s) 106, 187, 481, 503
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 2 cut(s) 172, 333
BspANI GGCC 1 cut(s) 462
BspCNI CTCAG 2 cut(s) 25, 186
BspEI TCCGGA 2 cut(s) 278, 619
BspHI TCATGA 2 cut(s) 103, 109
BspLI GGNNCC 2 cut(s) 337, 367
BspT107I GGYRCC 2 cut(s) 335, 365
BsrFI RCCGGY 2 cut(s) 338, 362
BsrI ACTGG 2 cut(s) 147, 392
BssAI RCCGGY 2 cut(s) 338, 362
BssECI CCNNGG 2 cut(s) 21, 80
BssMI GATC 4 cut(s) 106, 187, 481, 503
BssSI CACGAG 1 cut(s) 546
BssT1I CCWWGG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 546
Bst4CI ACNGT 2 cut(s) 422, 498
Bst6I CTCTTC 1 cut(s) 619
BstC8I GCNNGC 2 cut(s) 297, 464
BstDEI CTNAG 2 cut(s) 33, 194
BstDSI CCRYGG 2 cut(s) 21, 80
BstF5I GGATG 1 cut(s) 580
BstKTI GATC 4 cut(s) 109, 190, 484, 506
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 106, 187, 481, 503
BstMWI GCNNNNNNNGC 3 cut(s) 91, 339, 472
BstV1I GCAGC 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 623
BstXI CCANNNNNNTGG 1 cut(s) 642
BsuI GTATCC 1 cut(s) 286
BsuRI GGCC 1 cut(s) 462
BtgI CCRYGG 2 cut(s) 21, 80
BtsCI GGATG 1 cut(s) 580
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 2 cut(s) 224, 565
Cac8I GCNNGC 2 cut(s) 297, 464
CciI TCATGA 2 cut(s) 103, 109
Cfr10I RCCGGY 2 cut(s) 338, 362
Csp6I GTAC 1 cut(s) 366
CviAII CATG 6 cut(s) 22, 104, 110, 185, 287, 452
CviJI RGCY 8 cut(s) 26, 85, 116, 299, 362, 434, 462, 528
CviKI_1 RGCY 8 cut(s) 26, 85, 116, 299, 362, 434, 462, 528
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 2 cut(s) 33, 194
DpnI GATC 4 cut(s) 108, 189, 483, 505
DpnII GATC 4 cut(s) 106, 187, 481, 503
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
Eco130I CCWWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 6 cut(s) 25, 107, 113, 188, 290, 455
FaqI GGGAC 1 cut(s) 153
FatI CATG 6 cut(s) 21, 103, 109, 184, 286, 451
FbaI TGATCA 2 cut(s) 106, 187
Fnu4HI GCNGC 2 cut(s) 152, 334
FokI GGATG 1 cut(s) 587
Fsp4HI GCNGC 2 cut(s) 152, 334
FspBI CTAG 2 cut(s) 308, 652
GluI GCNGC 2 cut(s) 152, 334
HaeIII GGCC 1 cut(s) 462
HapII CCGG 5 cut(s) 279, 339, 363, 404, 620
Hin1II CATG 6 cut(s) 25, 107, 113, 188, 290, 455
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 3 cut(s) 199, 311, 427
HpaII CCGG 5 cut(s) 279, 339, 363, 404, 620
Hpy188I TCNGA 2 cut(s) 492, 598
Hpy188III TCNNGA 7 cut(s) 32, 104, 110, 265, 279, 512, 620
HpyAV CCTTC 2 cut(s) 65, 359
HpyCH4III ACNGT 2 cut(s) 422, 498
HpyCH4V TGCA 4 cut(s) 68, 295, 455, 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 339, 472
HpyF3I CTNAG 2 cut(s) 33, 194
Hsp92II CATG 6 cut(s) 25, 107, 113, 188, 290, 455
Kpn2I TCCGGA 2 cut(s) 278, 619
KpnI GGTACC 1 cut(s) 369
Ksp22I TGATCA 2 cut(s) 106, 187
Kzo9I GATC 4 cut(s) 106, 187, 481, 503
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 1 cut(s) 163
MaeI CTAG 2 cut(s) 308, 652
MaeIII GTNAC 1 cut(s) 509
MalI GATC 4 cut(s) 108, 189, 483, 505
MboI GATC 4 cut(s) 106, 187, 481, 503
MboII GAAGA 5 cut(s) 394, 397, 527, 606, 623
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 4 cut(s) 178, 206, 268, 623
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 7 cut(s) 28, 35, 43, 100, 167, 189, 275
MroI TCCGGA 2 cut(s) 278, 619
MslI CAYNNNNRTG 2 cut(s) 108, 516
MspI CCGG 5 cut(s) 279, 339, 363, 404, 620
Mva1269I GAATGC 2 cut(s) 81, 297
MwoI GCNNNNNNNGC 3 cut(s) 91, 339, 472
NcoI CCATGG 1 cut(s) 21
NdeII GATC 4 cut(s) 106, 187, 481, 503
NlaIII CATG 6 cut(s) 25, 107, 113, 188, 290, 455
NlaIV GGNNCC 2 cut(s) 337, 367
NmuCI GTSAC 1 cut(s) 509
PagI TCATGA 2 cut(s) 103, 109
PctI GAATGC 2 cut(s) 81, 297
PfeI GAWTC 2 cut(s) 311, 427
PkrI GCNGC 2 cut(s) 153, 335
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 337, 367
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 2 cut(s) 108, 516
SatI GCNGC 2 cut(s) 152, 334
Sau3AI GATC 4 cut(s) 106, 187, 481, 503
SchI GAGTC 1 cut(s) 208
SduI GDGCHC 1 cut(s) 403
SetI ASST 9 cut(s) 54, 118, 159, 262, 301, 436, 444, 511, 573
SgrAI CRCCGGYG 1 cut(s) 338
SmiMI CAYNNNNRTG 2 cut(s) 108, 516
Sse9I AATT 4 cut(s) 178, 206, 268, 623
SsiI CCGC 2 cut(s) 172, 333
SspMI CTAG 2 cut(s) 308, 652
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 422, 498
TaqI TCGA 2 cut(s) 120, 380
TasI AATT 4 cut(s) 178, 206, 268, 623
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 2 cut(s) 311, 427
TscAI CASTG 2 cut(s) 231, 565
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 5 cut(s) 92, 126, 440, 591, 654
TspRI CASTG 2 cut(s) 231, 565
XapI RAATTY 1 cut(s) 206
XspI CTAG 2 cut(s) 308, 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.