Prupe.8G241700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013341
Physical Location & Seq
Forward (+)
21156056 .. 21158568
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G241700.1

Sequence Viewer

Length: 558 bp
ATGGCTGCTAAGGAAGGAGAGGTTGGTTTTGAAGAAGGAATGCTGTGGCTGCCGTCTCAAGTTCTAGACGAAGCAATACGTGACACAAAGGCATACTCGAGGCTTCAAGTGCAGCACCACCAGCATCATCATTTGAATTCAAAACCTAGCTCAATTAGACCTCATCCTCATAGACCAAAAGCCAATGTCAATTGGTCATCTGGAGGGCCTGGAATGCAAGCTATTTTCCTGGATTCTTCTAGCCAAAGATCATGTGGCACTGGCGTTTTTCTTCCTCAAATAGCAGGCTCCAACTCCCACAAAACTAAAAAACCAGCTTGTGCTCCTGTTCTTCTGCCCTCCCGTGTGGTTCAAGCTCTCAACCTCAATGTTCATGCCCTAGGCCTCCAAATTTCACCCCGTCAAGATGCTAAGGATCATAAACGAAAAGGAGGCGATTGTATTTCAGTTCATAATAAAAATGGAAATAAAGATGTTCCATCGACTCAATGCTACATTATTACTCAAAATCCAAGTTCTTCCCCGGAGCTATTTCTTCCCAAGGAATGGACATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.37

Weight (kDa)

9.39

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02830 AT4G02830 AT4G02830
fragaria_vesca FvH4_2g23650
malus_domestica MD03G1266000.v1.1 MD11G1286400.v1.1
prunus_persica Prupe.8G241700_v2.0.a1
pyrus_communis pycom03g21250 pycom11g25390
rosa_chinensis RchiOBHm_Chr6g0291121
rosa_laevigata RLG00000012142
rosa_roxburghii Rroxscaffold_7G00176360
rosa_rugosa Rorug06G0217800
rosa_samantha Rh6AG328000 Rh6BG335500 Rh6CG341700 Rh6DG328900
rosa_wichuraiana Rw6G028530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 546
AclWI GGATC 1 cut(s) 423
AcsI RAATTY 2 cut(s) 136, 390
AfiI CCNNNNNNNGG 1 cut(s) 546
AgsI TTSAA 5 cut(s) 32, 107, 136, 141, 353
AjnI CCWGG 2 cut(s) 208, 228
AjuI GAANNNNNNNTTGG 1 cut(s) 38
AluBI AGCT 5 cut(s) 150, 221, 317, 356, 529
AluI AGCT 5 cut(s) 150, 221, 317, 356, 529
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 1 cut(s) 60
AlwI GGATC 1 cut(s) 423
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 2 cut(s) 206, 382
ApeKI GCWGC 3 cut(s) 5, 49, 112
ApoI RAATTY 2 cut(s) 136, 390
AspA2I CCTAGG 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 206
AsuC2I CCSGG 1 cut(s) 524
AsuHPI GGTGA 1 cut(s) 387
AvaI CYCGRG 1 cut(s) 97
AvrII CCTAGG 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 2 cut(s) 36, 124
BccI CCATC 1 cut(s) 487
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 2 cut(s) 210, 230
BcnI CCSGG 1 cut(s) 524
BcoDI GTCTC 1 cut(s) 60
BfaI CTAG 5 cut(s) 65, 147, 240, 380, 556
BisI GCNGC 3 cut(s) 6, 50, 113
BlnI CCTAGG 1 cut(s) 379
BlsI GCNGC 3 cut(s) 7, 51, 114
Bme1390I CCNGG 3 cut(s) 210, 230, 524
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 3 cut(s) 210, 230, 524
BmsI GCATC 2 cut(s) 133, 397
BpmI CTGGAG 1 cut(s) 222
Bpu10I CCTNAGC 2 cut(s) 9, 411
BpuEI CTTGAG 1 cut(s) 42
BpuMI CCSGG 1 cut(s) 524
BsaAI YACGTR 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 379, 522, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 546
Bse1I ACTGG 1 cut(s) 265
BseBI CCWGG 2 cut(s) 210, 230
BseDI CCNNGG 3 cut(s) 379, 522, 540
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 546
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 2 cut(s) 36, 124
BsgI GTGCAG 1 cut(s) 131
BshFI GGCC 2 cut(s) 208, 384
BsiHKAI GWGCWC 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 1 cut(s) 524
BslI CCNNNNNNNGG 1 cut(s) 546
BsmAI GTCTC 1 cut(s) 60
BsmBI CGTCTC 1 cut(s) 60
BsmI GAATGC 2 cut(s) 45, 219
BsnI GGCC 2 cut(s) 208, 384
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 2 cut(s) 248, 415
BspANI GGCC 2 cut(s) 208, 384
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 1 cut(s) 423
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 3 cut(s) 379, 522, 540
BssMI GATC 2 cut(s) 248, 415
BssT1I CCWWGG 2 cut(s) 379, 540
Bst2UI CCWGG 2 cut(s) 210, 230
BstBAI YACGTR 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 219, 286
BstDEI CTNAG 2 cut(s) 9, 411
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 2 cut(s) 251, 418
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 2 cut(s) 248, 415
BstMWI GCNNNNNNNGC 4 cut(s) 49, 109, 121, 214
BstNI CCWGG 2 cut(s) 210, 230
BstSCI CCNGG 3 cut(s) 208, 228, 522
BstV1I GCAGC 2 cut(s) 36, 124
BsuRI GGCC 2 cut(s) 208, 384
BtsCI GGATG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 219, 286
Cfr13I GGNCC 1 cut(s) 206
CviAII CATG 2 cut(s) 252, 374
DdeI CTNAG 2 cut(s) 9, 411
DpnI GATC 2 cut(s) 250, 417
DpnII GATC 2 cut(s) 248, 415
Eco130I CCWWGG 2 cut(s) 379, 540
Eco147I AGGCCT 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 208, 228
EcoT14I CCWWGG 2 cut(s) 379, 540
ErhI CCWWGG 2 cut(s) 379, 540
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 2 cut(s) 255, 377
FaiI YATR 7 cut(s) 94, 171, 253, 375, 420, 453, 553
FatI CATG 2 cut(s) 251, 373
Fnu4HI GCNGC 3 cut(s) 6, 50, 113
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 3 cut(s) 6, 50, 113
FspBI CTAG 5 cut(s) 65, 147, 240, 380, 556
GluI GCNGC 3 cut(s) 6, 50, 113
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 2 cut(s) 208, 384
HapII CCGG 1 cut(s) 524
Hin1II CATG 2 cut(s) 255, 377
HinfI GANTC 2 cut(s) 233, 484
HpaII CCGG 1 cut(s) 524
HphI GGTGA 1 cut(s) 387
Hpy188III TCNNGA 3 cut(s) 65, 201, 404
HpyAV CCTTC 2 cut(s) 8, 29
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 112, 217
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 109, 121, 214
HpyF3I CTNAG 2 cut(s) 9, 411
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 2 cut(s) 255, 377
Kzo9I GATC 2 cut(s) 248, 415
LmnI GCTCC 3 cut(s) 293, 328, 526
Lsp1109I GCAGC 2 cut(s) 36, 124
LweI GCATC 2 cut(s) 133, 397
MaeI CTAG 5 cut(s) 65, 147, 240, 380, 556
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 250, 417
MboI GATC 2 cut(s) 248, 415
MboII GAAGA 6 cut(s) 44, 228, 263, 323, 510, 527
MfeI CAATTG 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 4 cut(s) 136, 153, 190, 390
MlyI GAGTC 1 cut(s) 478
MmeI TCCRAC 1 cut(s) 315
MspI CCGG 1 cut(s) 524
MspR9I CCNGG 3 cut(s) 210, 230, 524
MunI CAATTG 1 cut(s) 190
Mva1269I GAATGC 2 cut(s) 45, 219
MvaI CCWGG 2 cut(s) 210, 230
MwoI GCNNNNNNNGC 4 cut(s) 49, 109, 121, 214
NciI CCSGG 1 cut(s) 524
NdeII GATC 2 cut(s) 248, 415
NlaIII CATG 2 cut(s) 255, 377
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 97
PceI AGGCCT 1 cut(s) 384
PctI GAATGC 2 cut(s) 45, 219
PfeI GAWTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 546
PfoI TCCNGGA 1 cut(s) 228
PkrI GCNGC 3 cut(s) 7, 51, 114
PleI GAGTC 1 cut(s) 478
PpsI GAGTC 1 cut(s) 478
Ppu21I YACGTR 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 208, 228
PspGI CCWGG 2 cut(s) 208, 228
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 206
PspXI VCTCGAGB 1 cut(s) 97
SatI GCNGC 3 cut(s) 6, 50, 113
Sau3AI GATC 2 cut(s) 248, 415
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 1 cut(s) 478
ScrFI CCNGG 3 cut(s) 210, 230, 524
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 2 cut(s) 133, 397
Sfr274I CTCGAG 1 cut(s) 97
SlaI CTCGAG 1 cut(s) 97
SmlI CTYRAG 2 cut(s) 57, 97
SmoI CTYRAG 2 cut(s) 57, 97
Sse9I AATT 4 cut(s) 136, 153, 190, 390
SseBI AGGCCT 1 cut(s) 384
SspMI CTAG 5 cut(s) 65, 147, 240, 380, 556
StuI AGGCCT 1 cut(s) 384
StyD4I CCNGG 3 cut(s) 208, 228, 522
StyI CCWWGG 2 cut(s) 379, 540
TaiI ACGT 1 cut(s) 82
TaqI TCGA 2 cut(s) 98, 482
TasI AATT 4 cut(s) 136, 153, 190, 390
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 3 cut(s) 5, 49, 112
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 362, 440
TspRI CASTG 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 546
XapI RAATTY 2 cut(s) 136, 390
XbaI TCTAGA 1 cut(s) 64
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XhoI CTCGAG 1 cut(s) 97
XmaJI CCTAGG 1 cut(s) 379
XspI CTAG 5 cut(s) 65, 147, 240, 380, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.