Rorug06G0217800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013341
Physical Location & Seq
Forward (+)
34799690 .. 34804142
4453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0217800.1

Sequence Viewer

Length: 717 bp
ATGAAAAGAAAGATAATGGATCAGAGTAAAGGGTCAGAGATTAGATCTGCCATTGAAGAACTCTCGGTCATGGTTAAAGTTATAGGTGTAATAACAGTCCAAGCTGAAAATGGTGATCATGATGCTCATGATGCTGCGTTTATAAATCATGAGGCTGCTCATATTCCCACCGGGCCCTTTCTTTCTCTTTGCTACTCGCTTCTTCGAGTTCTTGATAAAATAGGACCAACGATGGCTGTTTTAAGACAAGATATTCATCAGAATATTCGGAGATTGGAAACGAGGAACGAATCTGATCCTTCAGCATATTCAAATATGGTTGAGATATTGAAAACAGAAGCCACGGACGGCACTGCAAGAAATCTTACAAGTTGTAGTAGAGCCTTCGTTTGGCTCACCAGATCCTTGGATTTTACGGCAGAGTTATTGCAAAATTTAGCAGGAAACCCAGGGCAGAACATGAAGCAGGCAGTGGAAGAATCTTACAACCTCACTTTAAAGCCATGGCATAGATGGATTTCATCAGCTGCTTCTAAAGTAGCTTTAATGTTAGTGCCTGACAATGAGACCTTCATTAGTAGTCTCATGGAAAAAGATGAAAGCTATGACAACTTGAAAGTTGAAATGGAAACCTTGGTTTCATTACTTGTGCCTTATCTTGAGCAGATCCACTCCATTCTGAGGTTTTATCACTTGGACATGTTAAAGGCTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.87

Weight (kDa)

5.62

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 55 - 196 8.9e-40 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02830 AT4G02830 AT4G02830
fragaria_vesca FvH4_2g23650
malus_domestica MD03G1266000.v1.1 MD11G1286400.v1.1
prunus_persica Prupe.8G241700_v2.0.a1
pyrus_communis pycom03g21250 pycom11g25390
rosa_chinensis RchiOBHm_Chr6g0291121
rosa_laevigata RLG00000012142
rosa_roxburghii Rroxscaffold_7G00176360
rosa_rugosa Rorug06G0217800
rosa_samantha Rh6AG328000 Rh6BG335500 Rh6CG341700 Rh6DG328900
rosa_wichuraiana Rw6G028530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 143
AclWI GGATC 4 cut(s) 27, 290, 396, 661
AcsI RAATTY 1 cut(s) 433
AcuI CTGAAG 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 390, 681
AflIII ACRYGT 1 cut(s) 699
AgsI TTSAA 5 cut(s) 56, 312, 331, 616, 623
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 4 cut(s) 104, 527, 542, 603
AluI AGCT 4 cut(s) 104, 527, 542, 603
Alw26I GTCTC 2 cut(s) 560, 587
AlwI GGATC 4 cut(s) 27, 290, 396, 661
AoxI GGCC 1 cut(s) 173
ApaI GGGCCC 1 cut(s) 177
ApeKI GCWGC 3 cut(s) 134, 155, 527
ApoI RAATTY 1 cut(s) 433
AspS9I GGNCC 3 cut(s) 173, 174, 224
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 125, 388
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 177
BanII GRGCYC 1 cut(s) 177
BbvI GCAGC 3 cut(s) 121, 142, 514
BccI CCATC 2 cut(s) 226, 507
BceAI ACGGC 2 cut(s) 364, 432
BciT130I CCWGG 1 cut(s) 450
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 560, 587
BglII AGATCT 1 cut(s) 44
BisI GCNGC 3 cut(s) 135, 156, 528
BlsI GCNGC 3 cut(s) 136, 157, 529
Bme1390I CCNGG 2 cut(s) 172, 450
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 3 cut(s) 173, 174, 224
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 2 cut(s) 172, 450
BmsI GCATC 2 cut(s) 112, 121
BpuEI CTTGAG 1 cut(s) 680
BpuMI CCSGG 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 6 cut(s) 342, 405, 448, 449, 503, 633
Bsc4I CCNNNNNNNGG 2 cut(s) 390, 681
Bse8I GATNNNNATC 1 cut(s) 255
BseBI CCWGG 1 cut(s) 450
BseDI CCNNGG 6 cut(s) 342, 405, 448, 449, 503, 633
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 390, 681
BseMII CTCAG 1 cut(s) 671
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 3 cut(s) 121, 142, 514
BshFI GGCC 1 cut(s) 175
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 2 cut(s) 390, 681
BsmAI GTCTC 2 cut(s) 560, 587
BsnI GGCC 1 cut(s) 175
Bso31I GGTCTC 1 cut(s) 560
Bsp120I GGGCCC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 6 cut(s) 19, 44, 115, 295, 401, 666
Bsp19I CCATGG 1 cut(s) 503
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 672
BspHI TCATGA 3 cut(s) 118, 127, 148
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 4 cut(s) 27, 290, 396, 661
BspTNI GGTCTC 1 cut(s) 560
BssECI CCNNGG 6 cut(s) 342, 405, 448, 449, 503, 633
BssMI GATC 6 cut(s) 19, 44, 115, 295, 401, 666
BssT1I CCWWGG 3 cut(s) 405, 503, 633
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 1 cut(s) 680
BstDSI CCRYGG 2 cut(s) 342, 503
BstKTI GATC 6 cut(s) 22, 47, 118, 298, 404, 669
BstMAI GTCTC 2 cut(s) 560, 587
BstMBI GATC 6 cut(s) 19, 44, 115, 295, 401, 666
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 450
BstNSI RCATGY 1 cut(s) 703
BstSCI CCNGG 2 cut(s) 170, 448
BstSLI GKGCMC 1 cut(s) 177
BstV1I GCAGC 3 cut(s) 121, 142, 514
BstX2I RGATCY 3 cut(s) 44, 401, 666
BstXI CCANNNNNNTGG 1 cut(s) 406
BstYI RGATCY 3 cut(s) 44, 401, 666
BsuRI GGCC 1 cut(s) 175
BtgI CCRYGG 2 cut(s) 342, 503
BtsI GCAGTG 2 cut(s) 351, 477
BtsIMutI CAGTG 2 cut(s) 351, 477
Cac8I GCNNGC 1 cut(s) 468
CciI TCATGA 3 cut(s) 118, 127, 148
Cfr13I GGNCC 3 cut(s) 173, 174, 224
CviAII CATG 8 cut(s) 70, 119, 128, 149, 460, 504, 586, 700
DdeI CTNAG 1 cut(s) 680
DpnI GATC 6 cut(s) 21, 46, 117, 297, 403, 668
DpnII GATC 6 cut(s) 19, 44, 115, 295, 401, 666
DraI TTTAAA 1 cut(s) 498
Eco130I CCWWGG 3 cut(s) 405, 503, 633
Eco24I GRGCYC 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 448
EcoT14I CCWWGG 3 cut(s) 405, 503, 633
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 3 cut(s) 405, 503, 633
FaeI CATG 8 cut(s) 73, 122, 131, 152, 463, 507, 589, 703
FatI CATG 8 cut(s) 69, 118, 127, 148, 459, 503, 585, 699
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 135, 156, 528
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 3 cut(s) 135, 156, 528
GluI GCNGC 3 cut(s) 135, 156, 528
HaeIII GGCC 1 cut(s) 175
HapII CCGG 1 cut(s) 171
Hin1II CATG 8 cut(s) 73, 122, 131, 152, 463, 507, 589, 703
HinfI GANTC 2 cut(s) 290, 479
HpaII CCGG 1 cut(s) 171
HphI GGTGA 2 cut(s) 125, 388
Hpy188I TCNGA 6 cut(s) 24, 37, 261, 270, 295, 681
Hpy188III TCNNGA 5 cut(s) 119, 128, 149, 212, 659
HpyAV CCTTC 3 cut(s) 309, 394, 580
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 356, 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 680
Hsp92II CATG 8 cut(s) 73, 122, 131, 152, 463, 507, 589, 703
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 6 cut(s) 19, 44, 115, 295, 401, 666
LpnPI CCDG 7 cut(s) 184, 412, 426, 435, 452, 462, 570
Lsp1109I GCAGC 3 cut(s) 121, 142, 514
LweI GCATC 2 cut(s) 112, 121
MalI GATC 6 cut(s) 21, 46, 117, 297, 403, 668
MboI GATC 6 cut(s) 19, 44, 115, 295, 401, 666
MboII GAAGA 3 cut(s) 68, 194, 488
MflI RGATCY 3 cut(s) 44, 401, 666
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 1 cut(s) 433
MnlI CCTC 4 cut(s) 145, 276, 500, 675
MseI TTAA 5 cut(s) 75, 242, 497, 545, 704
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 172, 450
MvaI CCWGG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 131
NciI CCSGG 1 cut(s) 172
NcoI CCATGG 1 cut(s) 503
NdeII GATC 6 cut(s) 19, 44, 115, 295, 401, 666
NlaIII CATG 8 cut(s) 73, 122, 131, 152, 463, 507, 589, 703
NlaIV GGNNCC 1 cut(s) 175
NspI RCATGY 1 cut(s) 703
PagI TCATGA 3 cut(s) 118, 127, 148
PasI CCCWGGG 1 cut(s) 449
PciI ACATGT 1 cut(s) 699
PfeI GAWTC 2 cut(s) 290, 479
PkrI GCNGC 3 cut(s) 136, 157, 529
PscI ACATGT 1 cut(s) 699
PsiI TTATAA 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 175
PspOMI GGGCCC 1 cut(s) 173
PspPI GGNCC 3 cut(s) 173, 174, 224
PsuI RGATCY 3 cut(s) 44, 401, 666
PvuII CAGCTG 1 cut(s) 527
SaqAI TTAA 5 cut(s) 75, 242, 497, 545, 704
SatI GCNGC 3 cut(s) 135, 156, 528
Sau3AI GATC 6 cut(s) 19, 44, 115, 295, 401, 666
Sau96I GGNCC 3 cut(s) 173, 174, 224
ScrFI CCNGG 2 cut(s) 172, 450
SduI GDGCHC 1 cut(s) 177
SetI ASST 9 cut(s) 88, 106, 492, 529, 544, 572, 605, 635, 686
SfaNI GCATC 2 cut(s) 112, 121
SinI GGWCC 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
Sse9I AATT 1 cut(s) 433
SspI AATATT 1 cut(s) 265
StyD4I CCNGG 2 cut(s) 170, 448
StyI CCWWGG 3 cut(s) 405, 503, 633
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 205
TaqII GACCGA 1 cut(s) 55
TasI AATT 1 cut(s) 433
TfiI GAWTC 2 cut(s) 290, 479
Tru1I TTAA 5 cut(s) 75, 242, 497, 545, 704
Tru9I TTAA 5 cut(s) 75, 242, 497, 545, 704
TscAI CASTG 2 cut(s) 358, 477
TseI GCWGC 3 cut(s) 134, 155, 527
TspDTI ATGAA 7 cut(s) 17, 245, 476, 510, 562, 612, 630
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 2 cut(s) 358, 477
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 1 cut(s) 433
XceI RCATGY 1 cut(s) 703
XcmI CCANNNNNNNNNTGG 2 cut(s) 107, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.