Rh6CG341700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013341
Physical Location & Seq
Forward (+)
53287076 .. 53289188
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG341700.1

Sequence Viewer

Length: 654 bp
ATGGCTTCTCCTGAGAAAGGAGGAGGAGAGGTTGGTTTTGATTTTGAAGAAGGAATGTCGTGGCTTCCCTCGCCAGTTGTTCATGAAGCTTTCGACACAAAGGCATATTTGGGACGGGCAGAGCAACACCTCCACCACAACCAACATAATTACCAAGATCAACTGTATCCAAAATTTTGTAGCTCAAGGTCATCATTTTCGCCACATTATGTCACTAGACCGAAAGATATAAAGAATTGGGTATCTGGAGGACATGGAATGCAAGCTGTTTTCCTAGATTCTTCCCATAAATCACGTGGCGGCACTGGCGTTTTTCTTCCACAGAGAGCCGGCACCAACTTCTACTCGAAGAAGAAACCAGGTGCCAATATTTGTCGAAAATTTGACCATATTCCAGCTTGTGCTCCGGTTCTGTTGCCCGACCGTGTGATTCAAGCTCTCAATCTGAATGTTCATGCACTTGGCCTGCACATTTCACCCAAAGATCGTCATCGGAAACGATTTAAATCAGGTCACGAAGATGATACTCAAGATTGTATGTCACCTCGAAATAAAATGAGTGGGAGCAATGAGGATGAACAATGCTACATTATTTCCGAAAATCAAACCAACTCTTCTCCGGAGTCATGTCTTCCAAAAGAGTGGACCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.44

Weight (kDa)

8.19

Isoelectric Point (pI)

71.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02830 AT4G02830 AT4G02830
fragaria_vesca FvH4_2g23650
malus_domestica MD03G1266000.v1.1 MD11G1286400.v1.1
prunus_persica Prupe.8G241700_v2.0.a1
pyrus_communis pycom03g21250 pycom11g25390
rosa_chinensis RchiOBHm_Chr6g0291121
rosa_laevigata RLG00000012142
rosa_roxburghii Rroxscaffold_7G00176360
rosa_rugosa Rorug06G0217800
rosa_samantha Rh6AG328000 Rh6BG335500 Rh6CG341700 Rh6DG328900
rosa_wichuraiana Rw6G028530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 332, 362
AccIII TCCGGA 1 cut(s) 619
AciI CCGC 1 cut(s) 300
AcsI RAATTY 2 cut(s) 173, 380
AcvI CACGTG 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 47, 434
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 5 cut(s) 89, 183, 266, 398, 437
AluI AGCT 5 cut(s) 89, 183, 266, 398, 437
Alw21I GWGCWC 1 cut(s) 406
Aor13HI TCCGGA 1 cut(s) 619
AoxI GGCC 1 cut(s) 463
ApoI RAATTY 2 cut(s) 173, 380
AspS9I GGNCC 1 cut(s) 645
AsuHPI GGTGA 2 cut(s) 468, 534
AvaII GGWCC 1 cut(s) 645
BanI GGYRCC 2 cut(s) 332, 362
BbrPI CACGTG 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 623
Bbv12I GWGCWC 1 cut(s) 406
BciT130I CCWGG 1 cut(s) 360
BciVI GTATCC 1 cut(s) 177
BfaI CTAG 3 cut(s) 216, 275, 652
BfuI GTATCC 1 cut(s) 177
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 1 cut(s) 645
BmgT120I GGNCC 1 cut(s) 645
BmiI GGNNCC 2 cut(s) 334, 364
BmrFI CCNGG 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 623
BpmI CTGGAG 1 cut(s) 267
BpuEI CTTGAG 2 cut(s) 169, 513
BsaAI YACGTR 1 cut(s) 296
BsaBI GATNNNNATC 2 cut(s) 489, 505
BsaWI WCCGGW 2 cut(s) 406, 619
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 74, 310
Bse3DI GCAATG 1 cut(s) 574
Bse8I GATNNNNATC 2 cut(s) 489, 505
BseAI TCCGGA 1 cut(s) 619
BseBI CCWGG 1 cut(s) 360
BseGI GGATG 1 cut(s) 580
BseJI GATNNNNATC 2 cut(s) 489, 505
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 574
BseNI ACTGG 2 cut(s) 74, 310
BseRI GAGGAG 2 cut(s) 36, 39
BsgI GTGCAG 1 cut(s) 452
Bsh1285I CGRYCG 1 cut(s) 424
BshFI GGCC 1 cut(s) 465
BshNI GGYRCC 2 cut(s) 332, 362
BsiEI CGRYCG 1 cut(s) 424
BsiHKAI GWGCWC 1 cut(s) 406
BsiSI CCGG 3 cut(s) 330, 407, 620
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 17
BsmFI GGGAC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 406
Bsp13I TCCGGA 1 cut(s) 619
Bsp143I GATC 2 cut(s) 157, 484
BspACI CCGC 1 cut(s) 300
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 1 cut(s) 4
BspEI TCCGGA 1 cut(s) 619
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 334, 364
BspT107I GGYRCC 2 cut(s) 332, 362
BsrDI GCAATG 1 cut(s) 574
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 2 cut(s) 74, 310
BssAI RCCGGY 1 cut(s) 329
BssMI GATC 2 cut(s) 157, 484
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 2 cut(s) 165, 425
Bst6I CTCTTC 1 cut(s) 619
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 3 cut(s) 264, 331, 467
BstDEI CTNAG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 580
BstKTI GATC 2 cut(s) 160, 487
BstMBI GATC 2 cut(s) 157, 484
BstMCI CGRYCG 1 cut(s) 424
BstMWI GCNNNNNNNGC 2 cut(s) 70, 306
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 623
BstXI CCANNNNNNTGG 1 cut(s) 642
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 465
BtsCI GGATG 1 cut(s) 580
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 3 cut(s) 264, 331, 467
CciI TCATGA 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 645
CsiI ACCWGGT 1 cut(s) 358
CviAII CATG 4 cut(s) 83, 254, 455, 627
CviJI RGCY 9 cut(s) 5, 64, 89, 183, 266, 329, 398, 437, 465
CviKI_1 RGCY 9 cut(s) 5, 64, 89, 183, 266, 329, 398, 437, 465
DdeI CTNAG 1 cut(s) 12
DpnI GATC 2 cut(s) 159, 486
DpnII GATC 2 cut(s) 157, 484
DraI TTTAAA 1 cut(s) 505
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
Eco47I GGWCC 1 cut(s) 645
Eco72I CACGTG 1 cut(s) 296
EcoNI CCTNNNNNAGG 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 358
FaeI CATG 4 cut(s) 86, 257, 458, 630
FaqI GGGAC 1 cut(s) 126
FatI CATG 4 cut(s) 82, 253, 454, 626
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 1 cut(s) 587
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 3 cut(s) 216, 275, 652
GluI GCNGC 1 cut(s) 301
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 1 cut(s) 465
HapII CCGG 3 cut(s) 330, 407, 620
Hin1II CATG 4 cut(s) 86, 257, 458, 630
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 3 cut(s) 278, 430, 623
HpaII CCGG 3 cut(s) 330, 407, 620
HphI GGTGA 2 cut(s) 468, 534
Hpy166II GTNNAC 1 cut(s) 645
Hpy188I TCNGA 3 cut(s) 447, 495, 598
Hpy188III TCNNGA 6 cut(s) 11, 83, 246, 515, 530, 620
Hpy8I GTNNAC 1 cut(s) 645
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 2 cut(s) 165, 425
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 3 cut(s) 262, 458, 469
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 306
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 4 cut(s) 86, 257, 458, 630
Kpn2I TCCGGA 1 cut(s) 619
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Kzo9I GATC 2 cut(s) 157, 484
LmnI GCTCC 2 cut(s) 409, 564
MabI ACCWGGT 1 cut(s) 358
MaeI CTAG 3 cut(s) 216, 275, 652
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 3 cut(s) 211, 512, 540
MalI GATC 2 cut(s) 159, 486
MboI GATC 2 cut(s) 157, 484
MboII GAAGA 8 cut(s) 59, 273, 308, 361, 364, 530, 606, 623
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 4 cut(s) 148, 173, 235, 380
MlyI GAGTC 1 cut(s) 632
MnlI CCTC 8 cut(s) 14, 17, 22, 79, 140, 242, 555, 565
MroI TCCGGA 1 cut(s) 619
MroNI GCCGGC 1 cut(s) 329
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 519
MspI CCGG 3 cut(s) 330, 407, 620
MspR9I CCNGG 1 cut(s) 360
Mva1269I GAATGC 1 cut(s) 264
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 70, 306
NaeI GCCGGC 1 cut(s) 331
NdeII GATC 2 cut(s) 157, 484
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 4 cut(s) 86, 257, 458, 630
NlaIV GGNNCC 2 cut(s) 334, 364
NmuCI GTSAC 3 cut(s) 211, 512, 540
PagI TCATGA 1 cut(s) 82
PctI GAATGC 1 cut(s) 264
PdiI GCCGGC 1 cut(s) 331
PfeI GAWTC 2 cut(s) 278, 430
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 1 cut(s) 631
PmaCI CACGTG 1 cut(s) 296
PmlI CACGTG 1 cut(s) 296
PpsI GAGTC 1 cut(s) 631
Ppu21I YACGTR 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 358
PspCI CACGTG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 2 cut(s) 334, 364
PspPI GGNCC 1 cut(s) 645
RseI CAYNNNNRTG 1 cut(s) 519
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 2 cut(s) 157, 484
Sau96I GGNCC 1 cut(s) 645
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 406
SexAI ACCWGGT 1 cut(s) 358
SinI GGWCC 1 cut(s) 645
SmiI ATTTAAAT 1 cut(s) 505
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 2 cut(s) 184, 528
SmoI CTYRAG 2 cut(s) 184, 528
Sse9I AATT 4 cut(s) 148, 173, 235, 380
SsiI CCGC 1 cut(s) 300
SspI AATATT 1 cut(s) 370
SspMI CTAG 3 cut(s) 216, 275, 652
StyD4I CCNGG 1 cut(s) 358
SwaI ATTTAAAT 1 cut(s) 505
TaaI ACNGT 2 cut(s) 165, 425
TaiI ACGT 1 cut(s) 298
TaqI TCGA 4 cut(s) 93, 347, 376, 547
TaqII GACCGA 1 cut(s) 235
TasI AATT 4 cut(s) 148, 173, 235, 380
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 2 cut(s) 278, 430
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 3 cut(s) 211, 512, 540
Tsp45I GTSAC 3 cut(s) 211, 512, 540
TspDTI ATGAA 4 cut(s) 71, 99, 443, 591
TspRI CASTG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 645
XagI CCTNNNNNAGG 1 cut(s) 15
XapI RAATTY 2 cut(s) 173, 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XspI CTAG 3 cut(s) 216, 275, 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.