AT4G03210

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
1415617 .. 1417444
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03210.1

Sequence Viewer

Length: 873 bp
ATGGTCGGTATGGATTTGTTCAAATGTGTAATGATGATAATGGTGTTGGTTGTCTCTTGTGGTGAAGCTGTTTCTGGAGCTAAGTTCGATGAGCTTTATCGGTCAAGCTGGGCTATGGATCATTGTGTCAACGAAGGCGAAGTCACAAAACTCAAGCTTGACAATTACTCTGGAGCTGGGTTTGAATCAAGAAGCAAATACTTGTTTGGTAAAGTCTCTATCCAGATTAAGCTTGTTGAGGGTGATTCAGCAGGAACAGTCACTGCTTTCTACATGTCTTCAGATGGTCCGAACCACAACGAATTCGATTTTGAGTTCTTAGGGAACACTACCGGCGAGCCTTACATAGTCCAGACCAATATCTACGTGAACGGAGTTGGAAACAGAGAACAAAGACTCAACCTTTGGTTCGATCCCACCACTGAGTTTCACACTTACTCAATCCTCTGGAGTAAACGCAGTGTTGTATTCATGGTAGACGAAACACCGATTCGAGTTCAGAAGAATCTTGAAGAGAAAGGTATCCCATTTGCTAAAGATCAAGCAATGGGTGTTTACAGCTCCATTTGGAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTTAAAACTGATTGGAGTCACGCTCCTTTCGTTGCTTCTTACAAAGAATTCCAAATCGATGCATGTGAGATTCCAACAACTACTGATCTAAGCAAGTGTAATGGAGACCAGAAGTTTTGGTGGGATGAACCAACTGTCTCTGAGCTTAGCCTTCATCAGAATCATCAGCTTATTTGGGTTCGAGCTAATCATATGATTTATGATTATTGTTTTGATGCTACTAGGTTTCCTGTTACTCCTCTTGAGTGCCAACATCATCGTCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

290

Amino Acids

33.14

Weight (kDa)

5.09

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 31 - 207 4.1e-60 Glycosyl hydrolases family 16
XET_C PF06955 238 - 284 8.6e-17 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03210 AT4G03210
fragaria_vesca FvH4_6g43860 FvH4_6g43860
malus_domestica MD09G1102600.v1.1 MD17G1089900.v1.1
prunus_persica Prupe.3G223200_v2.0.a1
pyrus_communis pycom09g02590 pycom17g08700
rosa_chinensis RchiOBHm_Chr2g0160611
rosa_laevigata RLG00000021226
rosa_multiflora Rmu_co8450919.1_g000001
rosa_roxburghii Rroxscaffold_2G00089560
rosa_rugosa Rorug02G0484200
rosa_samantha Rh2DG572700
rosa_wichuraiana Rw2G045500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 477
AclWI GGATC 2 cut(s) 126, 407
AcsI RAATTY 2 cut(s) 302, 650
AcuI CTGAAG 1 cut(s) 264
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 3 cut(s) 22, 185, 512
Alw26I GTCTC 4 cut(s) 58, 220, 702, 745
AlwI GGATC 2 cut(s) 126, 407
AlwNI CAGNNNCTG 1 cut(s) 263
ApoI RAATTY 2 cut(s) 302, 650
ArsI GACNNNNNNTTYG 4 cut(s) 126, 158, 387, 419
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 74, 254
AvaII GGWCC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 270
BccI CCATC 1 cut(s) 278
BciVI GTATCC 1 cut(s) 533
BcoDI GTCTC 4 cut(s) 58, 220, 702, 745
BfaI CTAG 1 cut(s) 825
BfuI GTATCC 1 cut(s) 533
BlpI GCTNAGC 1 cut(s) 749
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmsI GCATC 2 cut(s) 652, 808
BpiI GAAGAC 1 cut(s) 270
BplI GAGNNNNNCTC 2 cut(s) 610, 642
BpmI CTGGAG 3 cut(s) 96, 192, 469
Bpu1102I GCTNAGC 1 cut(s) 749
BpuEI CTTGAG 2 cut(s) 137, 866
Bsa29I ATCGAT 1 cut(s) 660
BsaAI YACGTR 1 cut(s) 367
BsaI GGTCTC 1 cut(s) 702
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bse118I RCCGGY 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 552
BseCI ATCGAT 1 cut(s) 660
BseGI GGATG 1 cut(s) 733
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 2 cut(s) 414, 735
BseRI GAGGAG 1 cut(s) 831
BseYI CCCAGC 2 cut(s) 108, 176
BshVI ATCGAT 1 cut(s) 660
BsiSI CCGG 1 cut(s) 333
BsmAI GTCTC 4 cut(s) 58, 220, 702, 745
BsmI GAATGC 1 cut(s) 577
Bso31I GGTCTC 1 cut(s) 702
Bsp143I GATC 4 cut(s) 118, 412, 538, 688
Bsp1720I GCTNAGC 1 cut(s) 749
BspCNI CTCAG 2 cut(s) 415, 736
BspDI ATCGAT 1 cut(s) 660
BspPI GGATC 2 cut(s) 126, 407
BspTNI GGTCTC 1 cut(s) 702
BsrDI GCAATG 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 332
BssAI RCCGGY 1 cut(s) 332
BssMI GATC 4 cut(s) 118, 412, 538, 688
Bst4CI ACNGT 2 cut(s) 259, 739
Bst6I CTCTTC 1 cut(s) 507
BstBAI YACGTR 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 6 cut(s) 81, 319, 423, 692, 744, 749
BstF5I GGATG 1 cut(s) 733
BstKTI GATC 4 cut(s) 121, 415, 541, 691
BstMAI GTCTC 4 cut(s) 58, 220, 702, 745
BstMBI GATC 4 cut(s) 118, 412, 538, 688
BstNSI RCATGY 2 cut(s) 277, 669
BstV2I GAAGAC 1 cut(s) 270
Bsu15I ATCGAT 1 cut(s) 660
BsuI GTATCC 1 cut(s) 533
BsuTUI ATCGAT 1 cut(s) 660
BtsCI GGATG 1 cut(s) 733
BtsI GCAGTG 2 cut(s) 261, 466
BtsIMutI CAGTG 3 cut(s) 261, 420, 466
Cac8I GCNNGC 1 cut(s) 338
CaiI CAGNNNCTG 1 cut(s) 263
Cfr10I RCCGGY 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 287
ClaI ATCGAT 1 cut(s) 660
CviAII CATG 3 cut(s) 274, 472, 666
DdeI CTNAG 6 cut(s) 81, 319, 423, 692, 744, 749
DpnI GATC 4 cut(s) 120, 414, 540, 690
DpnII GATC 4 cut(s) 118, 412, 538, 688
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 702
Eco47I GGWCC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 264
EcoRI GAATTC 2 cut(s) 302, 650
EcoT22I ATGCAT 1 cut(s) 667
FaeI CATG 3 cut(s) 277, 475, 669
FaiI YATR 9 cut(s) 11, 116, 275, 347, 473, 667, 795, 797, 804
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FatI CATG 3 cut(s) 273, 471, 665
FauNDI CATATG 1 cut(s) 795
FblI GTMKAC 1 cut(s) 477
FokI GGATG 1 cut(s) 740
FspBI CTAG 1 cut(s) 825
GsaI CCCAGC 2 cut(s) 112, 180
GsuI CTGGAG 3 cut(s) 96, 192, 469
HapII CCGG 1 cut(s) 333
Hin1II CATG 3 cut(s) 277, 475, 669
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 2 cut(s) 155, 230
HinfI GANTC 8 cut(s) 185, 245, 396, 490, 505, 619, 673, 763
HpaII CCGG 1 cut(s) 333
HphI GGTGA 2 cut(s) 74, 254
Hpy166II GTNNAC 5 cut(s) 130, 370, 455, 478, 556
Hpy188I TCNGA 5 cut(s) 283, 291, 501, 745, 762
Hpy188III TCNNGA 8 cut(s) 75, 171, 189, 223, 352, 448, 509, 845
Hpy8I GTNNAC 5 cut(s) 130, 370, 455, 478, 556
HpyAV CCTTC 2 cut(s) 128, 764
HpyCH4III ACNGT 2 cut(s) 259, 739
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 2 cut(s) 575, 665
HpyF3I CTNAG 6 cut(s) 81, 319, 423, 692, 744, 749
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 3 cut(s) 277, 475, 669
Kzo9I GATC 4 cut(s) 118, 412, 538, 688
LmnI GCTCC 4 cut(s) 77, 173, 566, 631
LweI GCATC 2 cut(s) 652, 808
MaeI CTAG 1 cut(s) 825
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 4 cut(s) 142, 259, 620, 835
MalI GATC 4 cut(s) 120, 414, 540, 690
MboI GATC 4 cut(s) 118, 412, 538, 688
MboII GAAGA 3 cut(s) 270, 514, 524
MluCI AATT 3 cut(s) 163, 302, 650
MlyI GAGTC 2 cut(s) 390, 628
MmeI TCCRAC 2 cut(s) 358, 701
MnlI CCTC 4 cut(s) 232, 455, 590, 852
Mph1103I ATGCAT 1 cut(s) 667
MseI TTAA 2 cut(s) 228, 606
MspI CCGG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 577
NdeI CATATG 1 cut(s) 795
NdeII GATC 4 cut(s) 118, 412, 538, 688
NlaIII CATG 3 cut(s) 277, 475, 669
NmuCI GTSAC 3 cut(s) 142, 259, 620
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 2 cut(s) 277, 669
PciI ACATGT 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 630
PctI GAATGC 1 cut(s) 577
PfeI GAWTC 6 cut(s) 185, 245, 490, 505, 673, 763
PleI GAGTC 2 cut(s) 390, 627
PpsI GAGTC 2 cut(s) 390, 627
Ppu21I YACGTR 1 cut(s) 367
PscI ACATGT 1 cut(s) 273
PspFI CCCAGC 2 cut(s) 108, 176
PspPI GGNCC 1 cut(s) 287
PstNI CAGNNNCTG 1 cut(s) 263
SaqAI TTAA 2 cut(s) 228, 606
Sau3AI GATC 4 cut(s) 118, 412, 538, 688
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 2 cut(s) 390, 628
SfaNI GCATC 2 cut(s) 652, 808
SinI GGWCC 1 cut(s) 287
SmlI CTYRAG 2 cut(s) 152, 845
SmoI CTYRAG 2 cut(s) 152, 845
Sse9I AATT 3 cut(s) 163, 302, 650
SspMI CTAG 1 cut(s) 825
TaaI ACNGT 2 cut(s) 259, 739
TaiI ACGT 1 cut(s) 369
TaqI TCGA 6 cut(s) 87, 306, 411, 493, 660, 784
TaqII GACCGA 1 cut(s) 90
TasI AATT 3 cut(s) 163, 302, 650
TfiI GAWTC 6 cut(s) 185, 245, 490, 505, 673, 763
Tru1I TTAA 2 cut(s) 228, 606
Tru9I TTAA 2 cut(s) 228, 606
TscAI CASTG 3 cut(s) 268, 427, 466
TseFI GTSAC 3 cut(s) 142, 259, 620
Tsp45I GTSAC 3 cut(s) 142, 259, 620
TspDTI ATGAA 3 cut(s) 460, 744, 746
TspGWI ACGGA 1 cut(s) 387
TspRI CASTG 3 cut(s) 268, 427, 466
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 2 cut(s) 302, 650
XceI RCATGY 2 cut(s) 277, 669
XmiI GTMKAC 1 cut(s) 477
XspI CTAG 1 cut(s) 825
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.