Prupe.3G223200_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
22333272 .. 22336213
2942 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G223200.1

Sequence Viewer

Length: 891 bp
ATGGCAATTCCAGCGTTTAAAATTATGTCTCTGTTTCTGAGTGTGTTTGTGGGTTTTGCATTGGTGGGTCTGGTCAGCTCAGCTAAGTTTGATGAGCTTTTCCAGCCAACCTGGGCTTTCGATCATTTCACCCATGAAGGAGAGCTCCTTCACATGAAACTTGACAACTTCTCTGGAGCTGGGTTTCAATCCAAGAACAAGTATTTGTTTGGCAAAGTGAGCCTTCAGATTAAGCTTGTAGAGGGTGACTCTGCTGGAACAGTTACTGCTTTCTATATGTCATCGGACGGCCCATCTCACAACGAGTTTGACTTTGAGTTCCTGGGCAACACCACAGGCGAACCCTACTCAGTGCAGACCAACATTTATGTGAATGGTGTCGGCAACAGGGAGCAAAGATTGAACCTTTGGTTCGACCCCACCACGGAGTTTCACTCCTACTCGATCTTCTGGAACCAGCGCCAAGTAGTGTTTCTAGTGGATGAGACACCAATTAGAGTCCACACCAACATGGAAAACAAAGGGGTGCCCTTCCCCAAGGACCAAGCTATGGGGGTTTACAGTTCAATATGGAATGCAGATGACTGGGCCACACAAGGTGGTAGGGTCAAGACAGATTGGTCCCATGCACCCTTCATTGCAAGCTACAAGGGCTTTGAAATCAATGCCTGTGAGTGCCCAGTTTCTCTTGCAGCAGCAGATAACGCAAAGAAGTGCAGCAGCAGTGGAGATCAGAAGTATTGGTGGGACGAGCCTACATTGTCAGCCCTCAATCTCCACCAGAACCACCAGCTCGTGTGGGTCAAGGCTCACCACATGTTCTATGACTACTGCACTGATTCTGCTAGGTTTCCAGTGACACCTCTTGAGTGTGTTCATCACCGCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

297

Amino Acids

33.61

Weight (kDa)

5.73

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03210 AT4G03210
fragaria_vesca FvH4_6g43860 FvH4_6g43860
malus_domestica MD09G1102600.v1.1 MD17G1089900.v1.1
prunus_persica Prupe.3G223200_v2.0.a1
pyrus_communis pycom09g02590 pycom17g08700
rosa_chinensis RchiOBHm_Chr2g0160611
rosa_laevigata RLG00000021226
rosa_multiflora Rmu_co8450919.1_g000001
rosa_roxburghii Rroxscaffold_2G00089560
rosa_rugosa Rorug02G0484200
rosa_samantha Rh2DG572700
rosa_wichuraiana Rw2G045500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 619
AccB1I GGYRCC 1 cut(s) 526
AccB7I CCANNNNNTGG 1 cut(s) 550
AciI CCGC 1 cut(s) 883
AcuI CTGAAG 1 cut(s) 209
AdeI CACNNNGTG 1 cut(s) 599
AfiI CCNNNNNNNGG 2 cut(s) 424, 550
AflIII ACRYGT 1 cut(s) 816
AgsI TTSAA 4 cut(s) 188, 403, 567, 659
AjnI CCWGG 2 cut(s) 110, 321
AjuI GAANNNNNNNTTGG 2 cut(s) 456, 488
AluBI AGCT 9 cut(s) 78, 83, 97, 145, 179, 235, 548, 645, 793
AluI AGCT 9 cut(s) 78, 83, 97, 145, 179, 235, 548, 645, 793
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 2 cut(s) 33, 479
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 2 cut(s) 289, 588
ApeKI GCWGC 4 cut(s) 692, 695, 717, 720
AspLEI GCGC 1 cut(s) 462
AspS9I GGNCC 4 cut(s) 290, 541, 588, 621
AsuHPI GGTGA 4 cut(s) 121, 257, 803, 872
AvaII GGWCC 2 cut(s) 541, 621
BaeGI GKGCMC 2 cut(s) 531, 680
BanI GGYRCC 1 cut(s) 526
BanII GRGCYC 1 cut(s) 147
BauI CACGAG 1 cut(s) 794
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 4 cut(s) 704, 707, 729, 732
BccI CCATC 1 cut(s) 301
BceAI ACGGC 1 cut(s) 304
BciT130I CCWGG 2 cut(s) 112, 323
BcoDI GTCTC 2 cut(s) 33, 479
BfaI CTAG 3 cut(s) 476, 846, 889
BfoI RGCGCY 1 cut(s) 463
BisI GCNGC 4 cut(s) 693, 696, 718, 721
BlpI GCTNAGC 1 cut(s) 79
BlsI GCNGC 4 cut(s) 694, 697, 719, 722
Bme1390I CCNGG 2 cut(s) 112, 323
Bme18I GGWCC 2 cut(s) 541, 621
BmgT120I GGNCC 4 cut(s) 290, 541, 588, 621
BmiI GGNNCC 3 cut(s) 455, 528, 623
BmrFI CCNGG 2 cut(s) 112, 323
BmrI ACTGGG 2 cut(s) 595, 674
BmuI ACTGGG 2 cut(s) 595, 674
BplI GAGNNNNNCTC 4 cut(s) 233, 265, 419, 451
BpmI CTGGAG 1 cut(s) 195
Bpu1102I GCTNAGC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 887
BsaJI CCNNGG 4 cut(s) 111, 322, 423, 537
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 550
Bse1I ACTGG 3 cut(s) 590, 680, 854
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 2 cut(s) 112, 323
BseDI CCNNGG 4 cut(s) 111, 322, 423, 537
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 2 cut(s) 424, 550
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 3 cut(s) 29, 93, 363
BseNI ACTGG 3 cut(s) 590, 680, 854
BseSI GKGCMC 2 cut(s) 531, 680
BseXI GCAGC 4 cut(s) 704, 707, 729, 732
BseYI CCCAGC 1 cut(s) 179
BsgI GTGCAG 3 cut(s) 374, 736, 817
BshFI GGCC 2 cut(s) 291, 590
BshNI GGYRCC 1 cut(s) 526
BsiHKAI GWGCWC 1 cut(s) 147
BslFI GGGAC 2 cut(s) 607, 761
BslI CCNNNNNNNGG 2 cut(s) 424, 550
BsmAI GTCTC 2 cut(s) 33, 479
BsmFI GGGAC 2 cut(s) 607, 761
BsmI GAATGC 1 cut(s) 580
BsnI GGCC 2 cut(s) 291, 590
Bsp1286I GDGCHC 3 cut(s) 147, 531, 680
Bsp143I GATC 3 cut(s) 121, 444, 730
Bsp1720I GCTNAGC 1 cut(s) 79
BspACI CCGC 1 cut(s) 883
BspANI GGCC 2 cut(s) 291, 590
BspCNI CTCAG 3 cut(s) 30, 92, 362
BspLI GGNNCC 3 cut(s) 455, 528, 623
BspT107I GGYRCC 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 636
BsrI ACTGG 3 cut(s) 590, 680, 854
BssECI CCNNGG 4 cut(s) 111, 322, 423, 537
BssMI GATC 3 cut(s) 121, 444, 730
BssSI CACGAG 1 cut(s) 794
BssT1I CCWWGG 1 cut(s) 537
Bst2BI CACGAG 1 cut(s) 794
Bst2UI CCWGG 2 cut(s) 112, 323
Bst4CI ACNGT 2 cut(s) 262, 563
BstC8I GCNNGC 1 cut(s) 643
BstDEI CTNAG 4 cut(s) 38, 79, 84, 349
BstDSI CCRYGG 1 cut(s) 423
BstF5I GGATG 1 cut(s) 487
BstH2I RGCGCY 1 cut(s) 463
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 3 cut(s) 124, 447, 733
BstMAI GTCTC 2 cut(s) 33, 479
BstMBI GATC 3 cut(s) 121, 444, 730
BstMWI GCNNNNNNNGC 5 cut(s) 11, 103, 219, 651, 704
BstNI CCWGG 2 cut(s) 112, 323
BstNSI RCATGY 1 cut(s) 820
BstSCI CCNGG 2 cut(s) 110, 321
BstSLI GKGCMC 2 cut(s) 531, 680
BstV1I GCAGC 4 cut(s) 704, 707, 729, 732
BsuRI GGCC 2 cut(s) 291, 590
BtgI CCRYGG 1 cut(s) 423
BtsCI GGATG 1 cut(s) 487
BtsI GCAGTG 1 cut(s) 730
BtsIMutI CAGTG 4 cut(s) 357, 730, 834, 861
Cac8I GCNNGC 1 cut(s) 643
CaiI CAGNNNCTG 1 cut(s) 266
CfoI GCGC 1 cut(s) 462
Cfr13I GGNCC 4 cut(s) 290, 541, 588, 621
CviAII CATG 5 cut(s) 134, 154, 511, 626, 817
DdeI CTNAG 4 cut(s) 38, 79, 84, 349
DpnI GATC 3 cut(s) 123, 446, 732
DpnII GATC 3 cut(s) 121, 444, 730
DraI TTTAAA 1 cut(s) 19
DraIII CACNNNGTG 1 cut(s) 599
DrdI GACNNNNNNGTC 1 cut(s) 619
DseDI GACNNNNNNGTC 1 cut(s) 619
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 537
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 541, 621
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 110, 321
EcoT14I CCWWGG 1 cut(s) 537
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 5 cut(s) 137, 157, 514, 629, 820
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 2 cut(s) 607, 761
FatI CATG 5 cut(s) 133, 153, 510, 625, 816
Fnu4HI GCNGC 4 cut(s) 693, 696, 718, 721
FokI GGATG 1 cut(s) 494
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 4 cut(s) 693, 696, 718, 721
FspBI CTAG 3 cut(s) 476, 846, 889
GlaI GCGC 1 cut(s) 461
GluI GCNGC 4 cut(s) 693, 696, 718, 721
GsaI CCCAGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 463
HaeIII GGCC 2 cut(s) 291, 590
HhaI GCGC 1 cut(s) 462
Hin1II CATG 5 cut(s) 137, 157, 514, 629, 820
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 3 cut(s) 248, 498, 839
HphI GGTGA 4 cut(s) 121, 257, 803, 872
Hpy166II GTNNAC 2 cut(s) 502, 559
Hpy188I TCNGA 4 cut(s) 39, 228, 286, 735
Hpy188III TCNNGA 4 cut(s) 174, 451, 610, 866
Hpy8I GTNNAC 2 cut(s) 502, 559
HpyAV CCTTC 5 cut(s) 131, 158, 233, 541, 643
HpyCH4III ACNGT 2 cut(s) 262, 563
HpyCH4V TGCA 8 cut(s) 59, 355, 578, 629, 641, 692, 717, 834
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 103, 219, 651, 704
HpyF3I CTNAG 4 cut(s) 38, 79, 84, 349
Hsp92II CATG 5 cut(s) 137, 157, 514, 629, 820
HspAI GCGC 1 cut(s) 460
Kzo9I GATC 3 cut(s) 121, 444, 730
LmnI GCTCC 3 cut(s) 150, 176, 391
Lsp1109I GCAGC 4 cut(s) 704, 707, 729, 732
MaeI CTAG 3 cut(s) 476, 846, 889
MaeIII GTNAC 3 cut(s) 245, 262, 856
MalI GATC 3 cut(s) 123, 446, 732
MboI GATC 3 cut(s) 121, 444, 730
MboII GAAGA 1 cut(s) 439
MhlI GDGCHC 3 cut(s) 147, 531, 680
MluCI AATT 3 cut(s) 6, 21, 492
MlyI GAGTC 2 cut(s) 242, 507
MnlI CCTC 3 cut(s) 235, 779, 873
MseI TTAA 2 cut(s) 18, 231
MslI CAYNNNNRTG 2 cut(s) 368, 509
MspR9I CCNGG 2 cut(s) 112, 323
Mva1269I GAATGC 1 cut(s) 580
MvaI CCWGG 2 cut(s) 112, 323
MwoI GCNNNNNNNGC 5 cut(s) 11, 103, 219, 651, 704
NdeII GATC 3 cut(s) 121, 444, 730
NlaIII CATG 5 cut(s) 137, 157, 514, 629, 820
NlaIV GGNNCC 3 cut(s) 455, 528, 623
NmuCI GTSAC 2 cut(s) 245, 856
NspI RCATGY 1 cut(s) 820
PciI ACATGT 1 cut(s) 816
PctI GAATGC 1 cut(s) 580
PfeI GAWTC 1 cut(s) 839
PflMI CCANNNNNTGG 1 cut(s) 550
PkrI GCNGC 4 cut(s) 694, 697, 719, 722
PleI GAGTC 2 cut(s) 242, 506
PpsI GAGTC 2 cut(s) 242, 506
PscI ACATGT 1 cut(s) 816
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 2 cut(s) 110, 321
PspFI CCCAGC 1 cut(s) 179
PspGI CCWGG 2 cut(s) 110, 321
PspN4I GGNNCC 3 cut(s) 455, 528, 623
PspPI GGNCC 4 cut(s) 290, 541, 588, 621
PstNI CAGNNNCTG 1 cut(s) 266
RseI CAYNNNNRTG 2 cut(s) 368, 509
SacI GAGCTC 1 cut(s) 147
SaqAI TTAA 2 cut(s) 18, 231
SatI GCNGC 4 cut(s) 693, 696, 718, 721
Sau3AI GATC 3 cut(s) 121, 444, 730
Sau96I GGNCC 4 cut(s) 290, 541, 588, 621
SchI GAGTC 2 cut(s) 242, 507
ScrFI CCNGG 2 cut(s) 112, 323
SduI GDGCHC 3 cut(s) 147, 531, 680
SinI GGWCC 2 cut(s) 541, 621
SmiMI CAYNNNNRTG 2 cut(s) 368, 509
SmlI CTYRAG 1 cut(s) 866
SmoI CTYRAG 1 cut(s) 866
Sse9I AATT 3 cut(s) 6, 21, 492
SsiI CCGC 1 cut(s) 883
SspMI CTAG 3 cut(s) 476, 846, 889
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 110, 321
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 2 cut(s) 262, 563
TaqI TCGA 3 cut(s) 120, 414, 443
TasI AATT 3 cut(s) 6, 21, 492
TfiI GAWTC 1 cut(s) 839
Tru1I TTAA 2 cut(s) 18, 231
Tru9I TTAA 2 cut(s) 18, 231
TscAI CASTG 4 cut(s) 357, 730, 841, 861
TseFI GTSAC 2 cut(s) 245, 856
TseI GCWGC 4 cut(s) 692, 695, 717, 720
Tsp45I GTSAC 2 cut(s) 245, 856
TspDTI ATGAA 4 cut(s) 150, 170, 625, 866
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 4 cut(s) 357, 730, 841, 861
Van91I CCANNNNNTGG 1 cut(s) 550
VpaK11BI GGWCC 2 cut(s) 541, 621
XceI RCATGY 1 cut(s) 820
XspI CTAG 3 cut(s) 476, 846, 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.