Rmu_co8450919.1_g000001

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8450919.1
OG0015387
Physical Location & Seq
Reverse (-)
779 .. 1687
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8450919.1_g000001.1.cds

Sequence Viewer

Length: 624 bp
atgtcatcggacggtccactgcacaacgagtttgatttcgagttcctgggcaacaccacaggggagccttactctgttcagaccaacctctatatcaatggcgtcggcaatagagagcaaaggctcgacctttggtttgacccaaccacggacttccattcctactccattttctggaaccagcgccaagtagtgtttctagtggatgagaccccaattagggtacacacaaacatggaaagcaagggtttgcccttccccaaggaccaggctatgggggtatacagctcaatctggaatgccgatgactgggccacacagggcgggcgggtcaagaccgattggtcccatggaccctttgttgcatcttataagggctttgacatcaatgcctgtgagtgcccggtctccgtggccggagccgataacgcgaagaagtgcaccagcagcgcagacaagaagtactggtgggatgagcctgtgctgtccgagctgaacgtccaccagaaccaccagctggtgtgggttaagaaccaccacatggtctatgactactgcactgatactgctaggttcccagtcactccagttgagtgtgtgcaccacggtcaccaccgccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0046527
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

207

Amino Acids

23.78

Weight (kDa)

5.63

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03210 AT4G03210
fragaria_vesca FvH4_6g43860 FvH4_6g43860
malus_domestica MD09G1102600.v1.1 MD17G1089900.v1.1
prunus_persica Prupe.3G223200_v2.0.a1
pyrus_communis pycom09g02590 pycom17g08700
rosa_chinensis RchiOBHm_Chr2g0160611
rosa_laevigata RLG00000021226
rosa_multiflora Rmu_co8450919.1_g000001
rosa_roxburghii Rroxscaffold_2G00089560
rosa_rugosa Rorug02G0484200
rosa_samantha Rh2DG572700
rosa_wichuraiana Rw2G045500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AasI GACNNNNNNGTC 1 cut(s) 343
AccB7I CCANNNNNTGG 4 cut(s) 174, 274, 517, 541
AccI GTMKAC 1 cut(s) 282
AccII CGCG 1 cut(s) 431
AciI CCGC 3 cut(s) 324, 328, 616
AcoI YGGCCR 1 cut(s) 414
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 2 cut(s) 225, 464
AfiI CCNNNNNNNGG 8 cut(s) 148, 174, 219, 220, 274, 309, 517, 541
AjnI CCWGG 2 cut(s) 45, 267
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 3 cut(s) 288, 493, 517
AluI AGCT 3 cut(s) 288, 493, 517
Alw21I GWGCWC 2 cut(s) 443, 603
Alw26I GTCTC 2 cut(s) 203, 412
Alw44I GTGCAC 2 cut(s) 439, 599
AoxI GGCC 2 cut(s) 312, 414
ApaLI GTGCAC 2 cut(s) 439, 599
ApeKI GCWGC 1 cut(s) 447
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspLEI GCGC 2 cut(s) 186, 452
AspS9I GGNCC 5 cut(s) 14, 265, 312, 345, 353
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 1 cut(s) 602
AvaII GGWCC 4 cut(s) 14, 265, 345, 353
BaeGI GKGCMC 3 cut(s) 404, 443, 603
Bbv12I GWGCWC 2 cut(s) 443, 603
BbvI GCAGC 1 cut(s) 459
BciT130I CCWGG 2 cut(s) 47, 269
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 2 cut(s) 203, 412
BfaI CTAG 3 cut(s) 200, 570, 622
BfoI RGCGCY 1 cut(s) 187
BisI GCNGC 1 cut(s) 448
BlsI GCNGC 1 cut(s) 449
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 3 cut(s) 47, 269, 404
Bme18I GGWCC 4 cut(s) 14, 265, 345, 353
BmgT120I GGNCC 5 cut(s) 14, 265, 312, 345, 353
BmiI GGNNCC 6 cut(s) 66, 179, 347, 355, 421, 575
BmrFI CCNGG 3 cut(s) 47, 269, 404
BmrI ACTGGG 2 cut(s) 319, 572
BmsI GCATC 1 cut(s) 374
BmuI ACTGGG 2 cut(s) 319, 572
BplI GAGNNNNNCTC 2 cut(s) 56, 88
BpmI CTGGAG 1 cut(s) 570
BpuMI CCSGG 1 cut(s) 404
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 2 cut(s) 203, 412
BsaJI CCNNGG 6 cut(s) 46, 147, 261, 349, 411, 604
Bsc4I CCNNNNNNNGG 8 cut(s) 148, 174, 219, 220, 274, 309, 517, 541
Bse1I ACTGG 4 cut(s) 314, 470, 578, 587
BseBI CCWGG 2 cut(s) 47, 269
BseDI CCNNGG 6 cut(s) 46, 147, 261, 349, 411, 604
BseGI GGATG 2 cut(s) 211, 478
BseLI CCNNNNNNNGG 8 cut(s) 148, 174, 219, 220, 274, 309, 517, 541
BseNI ACTGG 4 cut(s) 314, 470, 578, 587
BseSI GKGCMC 3 cut(s) 404, 443, 603
BseXI GCAGC 1 cut(s) 459
BsgI GTGCAG 2 cut(s) 5, 541
Bsh1236I CGCG 1 cut(s) 431
BshFI GGCC 2 cut(s) 314, 416
BsiHKAI GWGCWC 2 cut(s) 443, 603
BsiSI CCGG 2 cut(s) 404, 417
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 8 cut(s) 148, 174, 219, 220, 274, 309, 517, 541
BsmAI GTCTC 2 cut(s) 203, 412
BsmFI GGGAC 1 cut(s) 331
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 2 cut(s) 314, 416
Bso31I GGTCTC 2 cut(s) 203, 412
Bsp1286I GDGCHC 3 cut(s) 404, 443, 603
Bsp19I CCATGG 1 cut(s) 349
BspACI CCGC 3 cut(s) 324, 328, 616
BspANI GGCC 2 cut(s) 314, 416
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 6 cut(s) 66, 179, 347, 355, 421, 575
BspTNI GGTCTC 2 cut(s) 203, 412
BsrI ACTGG 4 cut(s) 314, 470, 578, 587
BssECI CCNNGG 6 cut(s) 46, 147, 261, 349, 411, 604
BssNAI GTATAC 1 cut(s) 283
BssNI GRCGYC 1 cut(s) 102
BssT1I CCWWGG 2 cut(s) 261, 349
Bst1107I GTATAC 1 cut(s) 283
Bst2UI CCWGG 2 cut(s) 47, 269
Bst4CI ACNGT 2 cut(s) 14, 608
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 326
BstDSI CCRYGG 4 cut(s) 147, 349, 411, 604
BstEII GGTNACC 1 cut(s) 608
BstF5I GGATG 2 cut(s) 211, 478
BstFNI CGCG 1 cut(s) 431
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 2 cut(s) 186, 452
BstMAI GTCTC 2 cut(s) 203, 412
BstMWI GCNNNNNNNGC 3 cut(s) 428, 447, 490
BstNI CCWGG 2 cut(s) 47, 269
BstPI GGTNACC 1 cut(s) 608
BstSCI CCNGG 3 cut(s) 45, 267, 402
BstSLI GKGCMC 3 cut(s) 404, 443, 603
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 1 cut(s) 459
BstZ17I GTATAC 1 cut(s) 283
BsuRI GGCC 2 cut(s) 314, 416
BtgI CCRYGG 4 cut(s) 147, 349, 411, 604
BtsCI GGATG 2 cut(s) 211, 478
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 2 cut(s) 17, 558
Cac8I GCNNGC 1 cut(s) 326
CfoI GCGC 2 cut(s) 186, 452
Cfr13I GGNCC 5 cut(s) 14, 265, 312, 345, 353
CseI GACGC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 224, 463
CviAII CATG 3 cut(s) 235, 350, 541
CviQI GTAC 2 cut(s) 224, 463
DrdI GACNNNNNNGTC 1 cut(s) 343
DseDI GACNNNNNNGTC 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 414
Eco130I CCWWGG 2 cut(s) 261, 349
Eco31I GGTCTC 2 cut(s) 203, 412
Eco47I GGWCC 4 cut(s) 14, 265, 345, 353
Eco91I GGTNACC 1 cut(s) 608
EcoO65I GGTNACC 1 cut(s) 608
EcoRII CCWGG 2 cut(s) 45, 267
EcoT14I CCWWGG 2 cut(s) 261, 349
ErhI CCWWGG 2 cut(s) 261, 349
FaeI CATG 3 cut(s) 238, 353, 544
FaiI YATR 8 cut(s) 93, 236, 275, 283, 351, 372, 542, 549
FaqI GGGAC 1 cut(s) 331
FatI CATG 3 cut(s) 234, 349, 540
FauI CCCGC 2 cut(s) 317, 321
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 448
FokI GGATG 2 cut(s) 218, 485
Fsp4HI GCNGC 1 cut(s) 448
FspBI CTAG 3 cut(s) 200, 570, 622
GlaI GCGC 2 cut(s) 185, 451
GluI GCNGC 1 cut(s) 448
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 2 cut(s) 314, 416
HapII CCGG 2 cut(s) 404, 417
HgaI GACGC 1 cut(s) 91
HhaI GCGC 2 cut(s) 186, 452
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 3 cut(s) 238, 353, 544
Hin6I GCGC 2 cut(s) 184, 450
HinP1I GCGC 2 cut(s) 184, 450
HpaII CCGG 2 cut(s) 404, 417
HphI GGTGA 1 cut(s) 602
Hpy166II GTNNAC 6 cut(s) 17, 226, 283, 441, 502, 601
Hpy188I TCNGA 3 cut(s) 10, 81, 490
Hpy188III TCNNGA 3 cut(s) 175, 295, 334
Hpy8I GTNNAC 6 cut(s) 17, 226, 283, 441, 502, 601
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 2 cut(s) 14, 608
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 5 cut(s) 22, 365, 441, 558, 601
HpyF10VI GCNNNNNNNGC 3 cut(s) 428, 447, 490
HpySE526I ACGT 1 cut(s) 498
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 3 cut(s) 238, 353, 544
HspAI GCGC 2 cut(s) 184, 450
LmnI GCTCC 2 cut(s) 64, 419
Lsp1109I GCAGC 1 cut(s) 459
LweI GCATC 1 cut(s) 374
MaeI CTAG 3 cut(s) 200, 570, 622
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 2 cut(s) 580, 608
MboII GAAGA 1 cut(s) 445
MhlI GDGCHC 3 cut(s) 404, 443, 603
MluCI AATT 1 cut(s) 216
MnlI CCTC 1 cut(s) 98
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 517
MspI CCGG 2 cut(s) 404, 417
MspR9I CCNGG 3 cut(s) 47, 269, 404
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 2 cut(s) 47, 269
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 3 cut(s) 428, 447, 490
NciI CCSGG 1 cut(s) 404
NcoI CCATGG 1 cut(s) 349
NlaIII CATG 3 cut(s) 238, 353, 544
NlaIV GGNNCC 6 cut(s) 66, 179, 347, 355, 421, 575
NmuCI GTSAC 2 cut(s) 580, 608
PctI GAATGC 1 cut(s) 304
PflMI CCANNNNNTGG 4 cut(s) 174, 274, 517, 541
PkrI GCNGC 1 cut(s) 449
PsiI TTATAA 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 45, 267
PspEI GGTNACC 1 cut(s) 608
PspGI CCWGG 2 cut(s) 45, 267
PspN4I GGNNCC 6 cut(s) 66, 179, 347, 355, 421, 575
PspPI GGNCC 5 cut(s) 14, 265, 312, 345, 353
PvuII CAGCTG 1 cut(s) 517
RsaI GTAC 2 cut(s) 225, 464
RsaNI GTAC 2 cut(s) 224, 463
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 1 cut(s) 448
Sau96I GGNCC 5 cut(s) 14, 265, 312, 345, 353
ScaI AGTACT 1 cut(s) 464
ScrFI CCNGG 3 cut(s) 47, 269, 404
SduI GDGCHC 3 cut(s) 404, 443, 603
SetI ASST 7 cut(s) 90, 132, 290, 495, 501, 519, 575
SfaNI GCATC 1 cut(s) 374
SinI GGWCC 4 cut(s) 14, 265, 345, 353
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 1 cut(s) 216
SsiI CCGC 3 cut(s) 324, 328, 616
SspMI CTAG 3 cut(s) 200, 570, 622
StyD4I CCNGG 3 cut(s) 45, 267, 402
StyI CCWWGG 2 cut(s) 261, 349
TaaI ACNGT 2 cut(s) 14, 608
TaiI ACGT 1 cut(s) 501
TaqI TCGA 2 cut(s) 39, 126
TaqII GACCGA 1 cut(s) 353
TasI AATT 1 cut(s) 216
TatI WGTACW 1 cut(s) 462
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 2 cut(s) 24, 565
TseFI GTSAC 2 cut(s) 580, 608
TseI GCWGC 1 cut(s) 447
Tsp45I GTSAC 2 cut(s) 580, 608
TspGWI ACGGA 2 cut(s) 164, 400
TspRI CASTG 2 cut(s) 24, 565
Van91I CCANNNNNTGG 4 cut(s) 174, 274, 517, 541
VneI GTGCAC 2 cut(s) 439, 599
VpaK11BI GGWCC 4 cut(s) 14, 265, 345, 353
XmiI GTMKAC 1 cut(s) 282
XspI CTAG 3 cut(s) 200, 570, 622
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.