Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015387

Physical Location & Seq

Genomic Coordinates Forward (+)

73118668 .. 73120271

Gene Structure 1604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021226

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCTACTACTTCAGCCTCGAAAATCATGTCTCTGTCTCTCAGTGTGATTTTGGGTCTCTCATTGTTCTTGGGTCTGGCCAGCTCGGCCAAGTTCGATGAGCTTTTCCATCCCTACTGGGCCTCCGACCATTTCACATACGAAGGCGAGCTTCTTCATATGAAGCTCGACAATTTTTCCGGAGCTGGGTTTTCATCCAAGAACAAGTACATGTATGGCAAAGTGACCGTACAGATTAAGCTCATAGAGGGTGACTCTGCTGGAACTGTCACTGCTTTCTACATGGCATCGGACGGTCCACTACACAACGAGTTCGATTTCGAGTTCCTGGGCAACACCTCAGGGGAGCCTTACTCTGTTCAGACCAACCTCTATATCAATGGCGTCGGCAATAGAGAGCAAAGGCTCGACCTTTGGTTTGACCCAACTACGGACTTCCACTCCTACTCCATTTTCTGGAACCAGCGCCGAGTAGTGTTTCTAGTGGATGAGACCCCAATTAGGGTACACACAAACATGGAAAGCAAGGGTTTGCCCTTCCCCAAGGACCAGGCTATGGGGGTATACAGCTCAATCTGGAATGCCGATGACTGGGCCACACAGGGCGGGCGCGTCAAGACCGATTGGTCCCATGGACCCTTTGTTGCATCTTATAAGGGCTTTGACATCAATGCCTGTGAGTGCCCGGTCTCCGTGGCCGGAGTCGATAACGCCAAGAAGTGCACCAGCAGCGCAGACAAGAAGTACTGGTGGGATGAGCCTGTGCTGTCCGAGCTGAACGTCCACCAGAACCACCAGCTGGTGTGGGTTAAGAACCACCACATGGTGTATGACTACTGCACTGATACTGCTAGGTTCCCAGTCACTCCAGTTGAGTGTGTGCACCACGGTCACCACCGCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0046527

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

302

Amino Acids

34.07

Weight (kDa)

5.85

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	34 - 210	2.1e-60	Glycosyl hydrolases family 16
XET_C	PF06955	246 - 293	1.2e-17	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03210 AT4G03210
fragaria_vesca	FvH4_6g43860 FvH4_6g43860
malus_domestica	MD09G1102600.v1.1 MD17G1089900.v1.1
prunus_persica	Prupe.3G223200_v2.0.a1
pyrus_communis	pycom09g02590 pycom17g08700
rosa_chinensis	RchiOBHm_Chr2g0160611
rosa_laevigata	RLG00000021226
rosa_multiflora	Rmu_co8450919.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089560
rosa_rugosa	Rorug02G0484200
rosa_samantha	Rh2DG572700
rosa_wichuraiana	Rw2G045500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AasI	GACNNNNNNGTC	1 cut(s)	625
AccB7I	CCANNNNNTGG	4 cut(s)	456, 556, 799, 823
AccI	GTMKAC	1 cut(s)	564
AccII	CGCG	1 cut(s)	612
AccIII	TCCGGA	1 cut(s)	179
AciI	CCGC	2 cut(s)	606, 898
AcoI	YGGCCR	3 cut(s)	78, 87, 696
AcyI	GRCGYC	1 cut(s)	384
AdeI	CACNNNGTG	1 cut(s)	826
AfaI	GTAC	4 cut(s)	209, 231, 507, 746
AfiI	CCNNNNNNNGG	9 cut(s)	186, 430, 456, 501, 502, 556, 591, 799, 823
AflIII	ACRYGT	1 cut(s)	210
AjnI	CCWGG	2 cut(s)	327, 549
AluBI	AGCT	9 cut(s)	84, 103, 151, 166, 185, 241, 570, 775, 799
AluI	AGCT	9 cut(s)	84, 103, 151, 166, 185, 241, 570, 775, 799
Alw21I	GWGCWC	2 cut(s)	725, 885
Alw26I	GTCTC	5 cut(s)	36, 42, 62, 485, 694
Alw44I	GTGCAC	2 cut(s)	721, 881
Aor13HI	TCCGGA	1 cut(s)	179
AoxI	GGCC	5 cut(s)	78, 87, 120, 594, 696
ApaLI	GTGCAC	2 cut(s)	721, 881
ApeKI	GCWGC	1 cut(s)	729
ArsI	GACNNNNNNTTYG	4 cut(s)	14, 46, 401, 433
AspLEI	GCGC	3 cut(s)	468, 612, 734
AspS9I	GGNCC	6 cut(s)	120, 296, 547, 594, 627, 635
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	2 cut(s)	263, 884
AvaII	GGWCC	4 cut(s)	296, 547, 627, 635
AxyI	CCTNAGG	1 cut(s)	340
BaeGI	GKGCMC	3 cut(s)	686, 725, 885
BalI	TGGCCA	1 cut(s)	80
Bbv12I	GWGCWC	2 cut(s)	725, 885
BbvI	GCAGC	1 cut(s)	741
BccI	CCATC	1 cut(s)	117
BciT130I	CCWGG	2 cut(s)	329, 551
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	5 cut(s)	36, 42, 62, 485, 694
BfaI	CTAG	3 cut(s)	482, 852, 904
BfoI	RGCGCY	1 cut(s)	469
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	730
BlsI	GCNGC	1 cut(s)	731
BmcAI	AGTACT	1 cut(s)	746
Bme1390I	CCNGG	3 cut(s)	329, 551, 686
Bme18I	GGWCC	4 cut(s)	296, 547, 627, 635
BmgT120I	GGNCC	6 cut(s)	120, 296, 547, 594, 627, 635
BmiI	GGNNCC	5 cut(s)	348, 461, 629, 637, 857
BmrFI	CCNGG	3 cut(s)	329, 551, 686
BmrI	ACTGGG	3 cut(s)	127, 601, 854
BmsI	GCATC	2 cut(s)	296, 656
BmuI	ACTGGG	3 cut(s)	127, 601, 854
BplI	GAGNNNNNCTC	4 cut(s)	239, 271, 338, 370
BpmI	CTGGAG	1 cut(s)	852
BpuMI	CCSGG	1 cut(s)	686
BsaHI	GRCGYC	1 cut(s)	384
BsaI	GGTCTC	3 cut(s)	62, 485, 694
BsaJI	CCNNGG	5 cut(s)	328, 543, 631, 693, 886
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	6 cut(s)	107, 137, 425, 431, 455, 461
Bsc4I	CCNNNNNNNGG	9 cut(s)	186, 430, 456, 501, 502, 556, 591, 799, 823
Bse1I	ACTGG	5 cut(s)	122, 596, 752, 860, 869
Bse21I	CCTNAGG	1 cut(s)	340
BseAI	TCCGGA	1 cut(s)	179
BseBI	CCWGG	2 cut(s)	329, 551
BseDI	CCNNGG	5 cut(s)	328, 543, 631, 693, 886
BseGI	GGATG	4 cut(s)	109, 194, 493, 760
BseLI	CCNNNNNNNGG	9 cut(s)	186, 430, 456, 501, 502, 556, 591, 799, 823
BseMII	CTCAG	2 cut(s)	55, 354
BseNI	ACTGG	5 cut(s)	122, 596, 752, 860, 869
BseSI	GKGCMC	3 cut(s)	686, 725, 885
BseXI	GCAGC	1 cut(s)	741
BseYI	CCCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	823
Bsh1236I	CGCG	1 cut(s)	612
BshFI	GGCC	5 cut(s)	80, 89, 122, 596, 698
BsiHKAI	GWGCWC	2 cut(s)	725, 885
BsiSI	CCGG	3 cut(s)	180, 686, 699
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	9 cut(s)	186, 430, 456, 501, 502, 556, 591, 799, 823
BsmAI	GTCTC	5 cut(s)	36, 42, 62, 485, 694
BsmFI	GGGAC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	5 cut(s)	80, 89, 122, 596, 698
Bso31I	GGTCTC	3 cut(s)	62, 485, 694
Bsp1286I	GDGCHC	3 cut(s)	686, 725, 885
Bsp13I	TCCGGA	1 cut(s)	179
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	2 cut(s)	606, 898
BspANI	GGCC	5 cut(s)	80, 89, 122, 596, 698
BspCNI	CTCAG	2 cut(s)	54, 353
BspEI	TCCGGA	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	612
BspLI	GGNNCC	5 cut(s)	348, 461, 629, 637, 857
BspTNI	GGTCTC	3 cut(s)	62, 485, 694
BsrI	ACTGG	5 cut(s)	122, 596, 752, 860, 869
BssECI	CCNNGG	5 cut(s)	328, 543, 631, 693, 886
BssNAI	GTATAC	1 cut(s)	565
BssNI	GRCGYC	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	543, 631
Bst1107I	GTATAC	1 cut(s)	565
Bst2UI	CCWGG	2 cut(s)	329, 551
Bst4CI	ACNGT	4 cut(s)	229, 268, 296, 890
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	3 cut(s)	82, 149, 608
BstDEI	CTNAG	2 cut(s)	41, 340
BstDSI	CCRYGG	3 cut(s)	631, 693, 886
BstEII	GGTNACC	1 cut(s)	890
BstF5I	GGATG	4 cut(s)	109, 194, 493, 760
BstFNI	CGCG	1 cut(s)	612
BstH2I	RGCGCY	1 cut(s)	469
BstHHI	GCGC	3 cut(s)	468, 612, 734
BstMAI	GTCTC	5 cut(s)	36, 42, 62, 485, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 729, 772
BstNI	CCWGG	2 cut(s)	329, 551
BstNSI	RCATGY	1 cut(s)	214
BstPI	GGTNACC	1 cut(s)	890
BstSCI	CCNGG	3 cut(s)	327, 549, 684
BstSLI	GKGCMC	3 cut(s)	686, 725, 885
BstUI	CGCG	1 cut(s)	612
BstV1I	GCAGC	1 cut(s)	741
BstZ17I	GTATAC	1 cut(s)	565
Bsu36I	CCTNAGG	1 cut(s)	340
BsuRI	GGCC	5 cut(s)	80, 89, 122, 596, 698
BtgI	CCRYGG	3 cut(s)	631, 693, 886
BtsCI	GGATG	4 cut(s)	109, 194, 493, 760
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	3 cut(s)	49, 270, 840
Cac8I	GCNNGC	3 cut(s)	82, 149, 608
CfoI	GCGC	3 cut(s)	468, 612, 734
Cfr13I	GGNCC	6 cut(s)	120, 296, 547, 594, 627, 635
CseI	GACGC	2 cut(s)	373, 601
Csp6I	GTAC	4 cut(s)	208, 230, 506, 745
CviAII	CATG	6 cut(s)	28, 211, 283, 517, 632, 823
CviQI	GTAC	4 cut(s)	208, 230, 506, 745
DdeI	CTNAG	2 cut(s)	41, 340
DraIII	CACNNNGTG	1 cut(s)	826
DrdI	GACNNNNNNGTC	1 cut(s)	625
DseDI	GACNNNNNNGTC	1 cut(s)	625
EaeI	YGGCCR	3 cut(s)	78, 87, 696
Eco130I	CCWWGG	2 cut(s)	543, 631
Eco31I	GGTCTC	3 cut(s)	62, 485, 694
Eco47I	GGWCC	4 cut(s)	296, 547, 627, 635
Eco81I	CCTNAGG	1 cut(s)	340
Eco91I	GGTNACC	1 cut(s)	890
EcoO65I	GGTNACC	1 cut(s)	890
EcoRII	CCWGG	2 cut(s)	327, 549
EcoT14I	CCWWGG	2 cut(s)	543, 631
ErhI	CCWWGG	2 cut(s)	543, 631
FaeI	CATG	6 cut(s)	31, 214, 286, 520, 635, 826
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	6 cut(s)	27, 210, 282, 516, 631, 822
FauI	CCCGC	1 cut(s)	599
FauNDI	CATATG	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	1 cut(s)	730
FokI	GGATG	4 cut(s)	96, 181, 500, 767
Fsp4HI	GCNGC	1 cut(s)	730
FspBI	CTAG	3 cut(s)	482, 852, 904
GlaI	GCGC	3 cut(s)	467, 611, 733
GluI	GCNGC	1 cut(s)	730
GsaI	CCCAGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	852
HaeII	RGCGCY	1 cut(s)	469
HaeIII	GGCC	5 cut(s)	80, 89, 122, 596, 698
HapII	CCGG	3 cut(s)	180, 686, 699
HgaI	GACGC	2 cut(s)	373, 601
HhaI	GCGC	3 cut(s)	468, 612, 734
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	6 cut(s)	31, 214, 286, 520, 635, 826
Hin6I	GCGC	3 cut(s)	466, 610, 732
HinP1I	GCGC	3 cut(s)	466, 610, 732
HinfI	GANTC	2 cut(s)	254, 702
HpaII	CCGG	3 cut(s)	180, 686, 699
HphI	GGTGA	2 cut(s)	263, 884
Hpy166II	GTNNAC	6 cut(s)	299, 508, 565, 723, 784, 883
Hpy188I	TCNGA	4 cut(s)	127, 292, 363, 772
Hpy188III	TCNNGA	4 cut(s)	180, 457, 577, 616
Hpy8I	GTNNAC	6 cut(s)	299, 508, 565, 723, 784, 883
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	2 cut(s)	137, 547
HpyCH4III	ACNGT	4 cut(s)	229, 268, 296, 890
HpyCH4IV	ACGT	1 cut(s)	780
HpyCH4V	TGCA	4 cut(s)	647, 723, 840, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 729, 772
HpyF3I	CTNAG	2 cut(s)	41, 340
HpySE526I	ACGT	1 cut(s)	780
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	6 cut(s)	31, 214, 286, 520, 635, 826
HspAI	GCGC	3 cut(s)	466, 610, 732
Kpn2I	TCCGGA	1 cut(s)	179
LmnI	GCTCC	2 cut(s)	182, 346
Lsp1109I	GCAGC	1 cut(s)	741
LweI	GCATC	2 cut(s)	296, 656
MaeI	CTAG	3 cut(s)	482, 852, 904
MaeII	ACGT	1 cut(s)	780
MaeIII	GTNAC	5 cut(s)	223, 251, 268, 862, 890
MboII	GAAGA	1 cut(s)	146
MhlI	GDGCHC	3 cut(s)	686, 725, 885
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	2 cut(s)	172, 498
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	248, 711
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	28, 133, 241, 349, 380
Mox20I	TGGCCA	1 cut(s)	80
MroI	TCCGGA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	2 cut(s)	237, 810
MslI	CAYNNNNRTG	1 cut(s)	515
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	799
MspI	CCGG	3 cut(s)	180, 686, 699
MspR9I	CCNGG	3 cut(s)	329, 551, 686
Mva1269I	GAATGC	1 cut(s)	586
MvaI	CCWGG	2 cut(s)	329, 551
MvnI	CGCG	1 cut(s)	612
MwoI	GCNNNNNNNGC	3 cut(s)	86, 729, 772
NciI	CCSGG	1 cut(s)	686
NcoI	CCATGG	1 cut(s)	631
NdeI	CATATG	1 cut(s)	159
NlaIII	CATG	6 cut(s)	31, 214, 286, 520, 635, 826
NlaIV	GGNNCC	5 cut(s)	348, 461, 629, 637, 857
NmeAIII	GCCGAG	2 cut(s)	65, 494
NmuCI	GTSAC	5 cut(s)	223, 251, 268, 862, 890
NspI	RCATGY	1 cut(s)	214
PciI	ACATGT	1 cut(s)	210
PctI	GAATGC	1 cut(s)	586
PflMI	CCANNNNNTGG	4 cut(s)	456, 556, 799, 823
PkrI	GCNGC	1 cut(s)	731
PleI	GAGTC	2 cut(s)	248, 710
PpsI	GAGTC	2 cut(s)	248, 710
PscI	ACATGT	1 cut(s)	210
PsiI	TTATAA	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	327, 549
PspEI	GGTNACC	1 cut(s)	890
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	2 cut(s)	327, 549
PspN4I	GGNNCC	5 cut(s)	348, 461, 629, 637, 857
PspPI	GGNCC	6 cut(s)	120, 296, 547, 594, 627, 635
PvuII	CAGCTG	1 cut(s)	799
RsaI	GTAC	4 cut(s)	209, 231, 507, 746
RsaNI	GTAC	4 cut(s)	208, 230, 506, 745
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	237, 810
SatI	GCNGC	1 cut(s)	730
Sau96I	GGNCC	6 cut(s)	120, 296, 547, 594, 627, 635
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	2 cut(s)	248, 711
ScrFI	CCNGG	3 cut(s)	329, 551, 686
SduI	GDGCHC	3 cut(s)	686, 725, 885
SfaNI	GCATC	2 cut(s)	296, 656
SfiI	GGCCNNNNNGGCC	1 cut(s)	86
SinI	GGWCC	4 cut(s)	296, 547, 627, 635
SmiMI	CAYNNNNRTG	1 cut(s)	515
Sse9I	AATT	2 cut(s)	172, 498
SsiI	CCGC	2 cut(s)	606, 898
SspMI	CTAG	3 cut(s)	482, 852, 904
StyD4I	CCNGG	3 cut(s)	327, 549, 684
StyI	CCWWGG	2 cut(s)	543, 631
TaaI	ACNGT	4 cut(s)	229, 268, 296, 890
TaiI	ACGT	1 cut(s)	783
TaqI	TCGA	7 cut(s)	20, 96, 168, 315, 321, 408, 705
TaqII	GACCGA	1 cut(s)	635
TasI	AATT	2 cut(s)	172, 498
TatI	WGTACW	2 cut(s)	207, 744
Tru1I	TTAA	2 cut(s)	237, 810
Tru9I	TTAA	2 cut(s)	237, 810
TscAI	CASTG	3 cut(s)	49, 277, 847
TseFI	GTSAC	5 cut(s)	223, 251, 268, 862, 890
TseI	GCWGC	1 cut(s)	729
Tsp45I	GTSAC	5 cut(s)	223, 251, 268, 862, 890
TspDTI	ATGAA	3 cut(s)	146, 176, 183
TspGWI	ACGGA	2 cut(s)	446, 682
TspRI	CASTG	3 cut(s)	49, 277, 847
Van91I	CCANNNNNTGG	4 cut(s)	456, 556, 799, 823
VneI	GTGCAC	2 cut(s)	721, 881
VpaK11BI	GGWCC	4 cut(s)	296, 547, 627, 635
XceI	RCATGY	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	564
XspI	CTAG	3 cut(s)	482, 852, 904
ZrmI	AGTACT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.