Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015387

Physical Location & Seq

Genomic Coordinates Forward (+)

33899090 .. 33901524

Gene Structure 2435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43860.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTTCTGCCTCTTTGTTTTTGAGTGTCATTTTGGGTCTCTCATTGTTTTTGGGTCCGGTTAGCTCGGCCAAATTCGATGAGCTTTTCCAGCCTTACTGGGCTTCTGACCATTTCACATACGAGGGCGAGCTTCTCCATATGAAGCTCGACAATTATTCTGGAGCTGGATTCTCATCCAAGAACAAGTACATGTTCGGGAAAGTGACCGTACAGATTAAGCTCGTAGAGGGTGACTCTGCCGGAACTGTCACTGCTTTCTATATGTCATCGGACGGTCCACTGCATAATGAGTTTGATTTCGAGTTTCTGGGCAACACTACAGGGGAGCCTTACTCTGTTCAGACCAACCTCTACATCAATGGCGTTGGCAACAGAGAGCAAAGGCTCGACCTTTGGTTCGACCCAACTACGGACTTCCACTCCTACTCCATTTTCTGGAACCAGCGCCAAGTAGTATTTCTAGTAGACGAGACTCCGATTAGGGTACACACCAACATGGAAAGCAAGGGGTTGCCCTTCCCCAAGGACCAGGCTATGGGGGTGTACAGCTCAATCTGGAACGCTGACGACTGGGCCACACAGGGCGGGAGGGTCAAGACCGATTGGTCCCATGGACCCTTTGTTGCATCTTACAAAGGCTTTGACATCAATGCCTGTGAGTGCCCGGCTTCCGTGGCTGGAGCCGAAAACGCCAAGAAGTGCAGCAGCAGCAATGGAGACAAGAAGTACTGGTGGGATGAGCCTGTGCTGTCCGAGCTTAACGTCCACCAGAACCACCAGCTGGTTTGGGTTAAGAACCACCACATGGTCTATGACTACTGCACTGATAGTGCTAGGTTCCCAGTCACTCCAGTCGAGTGTGTGCACCACCGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0046527

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

294

Amino Acids

33.16

Weight (kDa)

5.46

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	1 - 140	9.4e-52	Glycosyl hydrolases family 16
XET_C	PF06955	178 - 224	1.9e-17	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03210 AT4G03210
fragaria_vesca	FvH4_6g43860 FvH4_6g43860
malus_domestica	MD09G1102600.v1.1 MD17G1089900.v1.1
prunus_persica	Prupe.3G223200_v2.0.a1
pyrus_communis	pycom09g02590 pycom17g08700
rosa_chinensis	RchiOBHm_Chr2g0160611
rosa_laevigata	RLG00000021226
rosa_multiflora	Rmu_co8450919.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089560
rosa_rugosa	Rorug02G0484200
rosa_samantha	Rh2DG572700
rosa_wichuraiana	Rw2G045500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	607
AccB7I	CCANNNNNTGG	4 cut(s)	438, 538, 784, 808
AccI	GTMKAC	1 cut(s)	468
AciI	CCGC	1 cut(s)	588
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	5 cut(s)	191, 213, 489, 548, 731
AfiI	CCNNNNNNNGG	5 cut(s)	412, 438, 538, 784, 808
AflIII	ACRYGT	1 cut(s)	192
AjnI	CCWGG	1 cut(s)	531
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AluBI	AGCT	9 cut(s)	66, 85, 133, 148, 167, 223, 552, 760, 784
AluI	AGCT	9 cut(s)	66, 85, 133, 148, 167, 223, 552, 760, 784
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	3 cut(s)	44, 467, 714
Alw44I	GTGCAC	1 cut(s)	866
AoxI	GGCC	2 cut(s)	69, 576
ApaLI	GTGCAC	1 cut(s)	866
ApeKI	GCWGC	3 cut(s)	705, 708, 711
ApoI	RAATTY	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	6 cut(s)	56, 278, 529, 576, 609, 617
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	5 cut(s)	56, 278, 529, 609, 617
BaeGI	GKGCMC	2 cut(s)	668, 870
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	3 cut(s)	717, 720, 723
BciT130I	CCWGG	1 cut(s)	533
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	3 cut(s)	44, 467, 714
BfaI	CTAG	3 cut(s)	464, 837, 880
BfmI	CTRYAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	451
BisI	GCNGC	3 cut(s)	706, 709, 712
BlsI	GCNGC	3 cut(s)	707, 710, 713
BmcAI	AGTACT	1 cut(s)	731
Bme1390I	CCNGG	2 cut(s)	533, 668
Bme18I	GGWCC	5 cut(s)	56, 278, 529, 609, 617
BmgT120I	GGNCC	6 cut(s)	56, 278, 529, 576, 609, 617
BmiI	GGNNCC	7 cut(s)	57, 330, 443, 611, 619, 685, 842
BmrFI	CCNGG	2 cut(s)	533, 668
BmrI	ACTGGG	3 cut(s)	109, 583, 839
BmsI	GCATC	1 cut(s)	638
BmuI	ACTGGG	3 cut(s)	109, 583, 839
BplI	GAGNNNNNCTC	4 cut(s)	221, 253, 320, 352
BpmI	CTGGAG	3 cut(s)	183, 702, 837
BpuMI	CCSGG	1 cut(s)	668
BsaBI	GATNNNNATC	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	3 cut(s)	525, 613, 675
BsaWI	WCCGGW	1 cut(s)	58
BsaXI	ACNNNNNCTCC	4 cut(s)	407, 413, 437, 443
Bsc4I	CCNNNNNNNGG	5 cut(s)	412, 438, 538, 784, 808
Bse1I	ACTGG	5 cut(s)	104, 578, 737, 845, 854
Bse3DI	GCAATG	1 cut(s)	721
Bse8I	GATNNNNATC	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	533
BseDI	CCNNGG	3 cut(s)	525, 613, 675
BseGI	GGATG	2 cut(s)	176, 745
BseJI	GATNNNNATC	1 cut(s)	175
BseLI	CCNNNNNNNGG	5 cut(s)	412, 438, 538, 784, 808
BseMI	GCAATG	1 cut(s)	721
BseNI	ACTGG	5 cut(s)	104, 578, 737, 845, 854
BseSI	GKGCMC	2 cut(s)	668, 870
BseXI	GCAGC	3 cut(s)	717, 720, 723
BsgI	GTGCAG	2 cut(s)	724, 808
BshFI	GGCC	2 cut(s)	71, 578
BsiHKAI	GWGCWC	1 cut(s)	870
BsiSI	CCGG	3 cut(s)	59, 243, 668
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	5 cut(s)	412, 438, 538, 784, 808
BsmAI	GTCTC	3 cut(s)	44, 467, 714
BsmFI	GGGAC	1 cut(s)	595
BsnI	GGCC	2 cut(s)	71, 578
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	668, 870
Bsp1407I	TGTACA	1 cut(s)	546
Bsp19I	CCATGG	1 cut(s)	613
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	2 cut(s)	71, 578
BspLI	GGNNCC	7 cut(s)	57, 330, 443, 611, 619, 685, 842
BspTNI	GGTCTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	721
BsrGI	TGTACA	1 cut(s)	546
BsrI	ACTGG	5 cut(s)	104, 578, 737, 845, 854
BssECI	CCNNGG	3 cut(s)	525, 613, 675
BssT1I	CCWWGG	2 cut(s)	525, 613
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	4 cut(s)	211, 250, 278, 875
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	131
BstDSI	CCRYGG	2 cut(s)	613, 675
BstF5I	GGATG	2 cut(s)	176, 745
BstH2I	RGCGCY	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	450
BstMAI	GTCTC	3 cut(s)	44, 467, 714
BstMWI	GCNNNNNNNGC	5 cut(s)	91, 677, 692, 711, 757
BstNI	CCWGG	1 cut(s)	533
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	531, 666
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	2 cut(s)	668, 870
BstV1I	GCAGC	3 cut(s)	717, 720, 723
BsuRI	GGCC	2 cut(s)	71, 578
BtgI	CCRYGG	2 cut(s)	613, 675
BtsCI	GGATG	2 cut(s)	176, 745
BtsI	GCAGTG	2 cut(s)	252, 281
BtsIMutI	CAGTG	3 cut(s)	252, 281, 825
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	1 cut(s)	450
Cfr13I	GGNCC	6 cut(s)	56, 278, 529, 576, 609, 617
Csp6I	GTAC	5 cut(s)	190, 212, 488, 547, 730
CviAII	CATG	4 cut(s)	193, 499, 614, 808
CviQI	GTAC	5 cut(s)	190, 212, 488, 547, 730
DrdI	GACNNNNNNGTC	1 cut(s)	607
DseDI	GACNNNNNNGTC	1 cut(s)	607
EaeI	YGGCCR	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	525, 613
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	5 cut(s)	56, 278, 529, 609, 617
EcoRII	CCWGG	1 cut(s)	531
EcoT14I	CCWWGG	2 cut(s)	525, 613
ErhI	CCWWGG	2 cut(s)	525, 613
FaeI	CATG	4 cut(s)	196, 502, 617, 811
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	4 cut(s)	192, 498, 613, 807
FauI	CCCGC	1 cut(s)	581
FauNDI	CATATG	1 cut(s)	141
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	3 cut(s)	706, 709, 712
FokI	GGATG	2 cut(s)	163, 752
Fsp4HI	GCNGC	3 cut(s)	706, 709, 712
FspBI	CTAG	3 cut(s)	464, 837, 880
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	3 cut(s)	706, 709, 712
GsuI	CTGGAG	3 cut(s)	183, 702, 837
HaeII	RGCGCY	1 cut(s)	451
HaeIII	GGCC	2 cut(s)	71, 578
HapII	CCGG	3 cut(s)	59, 243, 668
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	4 cut(s)	196, 502, 617, 811
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HinfI	GANTC	3 cut(s)	171, 236, 475
HpaII	CCGG	3 cut(s)	59, 243, 668
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	6 cut(s)	281, 469, 490, 547, 769, 868
Hpy188I	TCNGA	5 cut(s)	109, 274, 345, 480, 757
Hpy188III	TCNNGA	5 cut(s)	162, 199, 439, 559, 598
Hpy8I	GTNNAC	6 cut(s)	281, 469, 490, 547, 769, 868
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	4 cut(s)	211, 250, 278, 875
HpyCH4IV	ACGT	1 cut(s)	765
HpyCH4V	TGCA	5 cut(s)	286, 629, 705, 825, 868
HpyF10VI	GCNNNNNNNGC	5 cut(s)	91, 677, 692, 711, 757
HpySE526I	ACGT	1 cut(s)	765
Hsp92II	CATG	4 cut(s)	196, 502, 617, 811
HspAI	GCGC	1 cut(s)	448
LmnI	GCTCC	3 cut(s)	164, 328, 683
Lsp1109I	GCAGC	3 cut(s)	717, 720, 723
LweI	GCATC	1 cut(s)	638
MaeI	CTAG	3 cut(s)	464, 837, 880
MaeII	ACGT	1 cut(s)	765
MaeIII	GTNAC	5 cut(s)	205, 233, 250, 847, 875
MhlI	GDGCHC	2 cut(s)	668, 870
MluCI	AATT	2 cut(s)	74, 154
MlyI	GAGTC	2 cut(s)	230, 469
MnlI	CCTC	5 cut(s)	22, 118, 223, 362, 585
MseI	TTAA	3 cut(s)	219, 762, 795
MslI	CAYNNNNRTG	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	784
MspI	CCGG	3 cut(s)	59, 243, 668
MspR9I	CCNGG	2 cut(s)	533, 668
MvaI	CCWGG	1 cut(s)	533
MwoI	GCNNNNNNNGC	5 cut(s)	91, 677, 692, 711, 757
NciI	CCSGG	1 cut(s)	668
NcoI	CCATGG	1 cut(s)	613
NdeI	CATATG	1 cut(s)	141
NlaIII	CATG	4 cut(s)	196, 502, 617, 811
NlaIV	GGNNCC	7 cut(s)	57, 330, 443, 611, 619, 685, 842
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	5 cut(s)	205, 233, 250, 847, 875
NspI	RCATGY	1 cut(s)	196
PciI	ACATGT	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	171
PflMI	CCANNNNNTGG	4 cut(s)	438, 538, 784, 808
PkrI	GCNGC	3 cut(s)	707, 710, 713
PleI	GAGTC	2 cut(s)	230, 469
PpsI	GAGTC	2 cut(s)	230, 469
PscI	ACATGT	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	531
PspGI	CCWGG	1 cut(s)	531
PspN4I	GGNNCC	7 cut(s)	57, 330, 443, 611, 619, 685, 842
PspPI	GGNCC	6 cut(s)	56, 278, 529, 576, 609, 617
PvuII	CAGCTG	1 cut(s)	784
RsaI	GTAC	5 cut(s)	191, 213, 489, 548, 731
RsaNI	GTAC	5 cut(s)	190, 212, 488, 547, 730
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	3 cut(s)	219, 762, 795
SatI	GCNGC	3 cut(s)	706, 709, 712
Sau96I	GGNCC	6 cut(s)	56, 278, 529, 576, 609, 617
ScaI	AGTACT	1 cut(s)	731
SchI	GAGTC	2 cut(s)	230, 469
ScrFI	CCNGG	2 cut(s)	533, 668
SduI	GDGCHC	2 cut(s)	668, 870
SfaNI	GCATC	1 cut(s)	638
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	5 cut(s)	56, 278, 529, 609, 617
SmiMI	CAYNNNNRTG	1 cut(s)	497
Sse9I	AATT	2 cut(s)	74, 154
SsiI	CCGC	1 cut(s)	588
SspMI	CTAG	3 cut(s)	464, 837, 880
StyD4I	CCNGG	2 cut(s)	531, 666
StyI	CCWWGG	2 cut(s)	525, 613
TaaI	ACNGT	4 cut(s)	211, 250, 278, 875
TaiI	ACGT	1 cut(s)	768
TaqI	TCGA	6 cut(s)	78, 150, 303, 390, 402, 858
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	2 cut(s)	74, 154
TatI	WGTACW	3 cut(s)	189, 546, 729
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	3 cut(s)	219, 762, 795
Tru9I	TTAA	3 cut(s)	219, 762, 795
TscAI	CASTG	3 cut(s)	259, 288, 832
TseFI	GTSAC	5 cut(s)	205, 233, 250, 847, 875
TseI	GCWGC	3 cut(s)	705, 708, 711
Tsp45I	GTSAC	5 cut(s)	205, 233, 250, 847, 875
TspDTI	ATGAA	1 cut(s)	158
TspGWI	ACGGA	2 cut(s)	428, 664
TspRI	CASTG	3 cut(s)	259, 288, 832
Van91I	CCANNNNNTGG	4 cut(s)	438, 538, 784, 808
VneI	GTGCAC	1 cut(s)	866
VpaK11BI	GGWCC	5 cut(s)	56, 278, 529, 609, 617
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	468
XspI	CTAG	3 cut(s)	464, 837, 880
ZrmI	AGTACT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.